BAC Information

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BAC

Clone NameB6Ng01-262O05
Chromosome9 (Build37)
Map Location 54,647,779 - 54,648,959
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1
Downstream geneRab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262O05.bB6Ng01-262O05.g
ACCGA067190GA067191
length1,2161,171
definitionB6Ng01-262O05.b B6Ng01-262O05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattggtcttaccatgtttcctatcaccctgaagcagctggtctg
attgaaagatggaatggccactcaggtggcagcagcatggagggctgggg
caggattcttcagaaggcagtatatgctttgaatcagtgtctgatctatg
gtacattttcccccatagccaggatccacgggtccaggaatcaagaggtg
gaaaagggaatcgttctactcacgatcactcctagtgacccacttggaaa
gtttttgctttctgtttttgaaacccaaagttctgctggcctggaagttt
tggttccagagggggtgtgctcctgctaggagccacaatgaatgttccat
taactgtaagctcagatgtctccctggttattgtgggtttctactgccct
taaatcaacagactaagaaaggaataatagtgttaggtggagtgataaat
ccagattatcatggggaaattggattacctctccacaatggaggtaagaa
gaattatatctggagtgcaggagatcctgtagggctcctcttattattac
catgtcctgtgattaaagtcaatgggaaactacaacagcctaatccaagt
agaatgacaaaggacgcagacccatcaggaatgaaggtatgtgtcaatcc
tccaggaaaagagtcaagacctgctgaggtgcttgcagaaggtgaaggaa
atatagaatggatagtagaggaaggtagttataaataccatctaaggcca
tgtgatcagttgcagaactgaggattataagttacatgaatgcttctttt
tcattttgttaatatatttgtacagatattcgtgctttctttcaatttct
ttaacataaattcaaagactaccaatggttatcatatttaagttagagat
ataaaaggatgtttcccaagggacattgatgtattctaaatttacaatgt
gtttgccagttgtacaggatagtatatcacgtagcatatttatgacctgg
ttattgtttcatttgacacaagatatggctgtctcagttgacaaggggtg
gatgtgaagctattccagtggtcactgactcctatcttgatgactacatt
cagaattgaagtccactgtgaactagaatctggatcagaaaaccaggcat
ttgaatccgaactaggactagaaaccacctaactcgagcttaccctttaa
cctggatcaatacgtc
gaattcactcaccacctgccaatcccgcactgcaggaggggcatgccaca
ctaacttatctccctacagggagacataaaatttgcctgtccataaagca
ttttattattcagtctgaacactgtgtttcatcgccgtgtagcatgtgtc
tcgttataccagacactaacatgtatctgaaaatgaaattctggaaggtt
accctggcttgtggaatgcctgcagtgtggtcttggaatggtggatatcc
gagccctagctctgcattcatggagcccttagtgggaagagggggcttgt
gcactgtggtagaggtggtgtcgatggtcctcactgtgctagctgtttct
ctgtgttgtaggctggagaggaaaaccctgaagtcaaggtcaagggcaga
gttgaaaaccctcagtgagcagaaagagaattctgtgctaaatgagtaga
gacctcgagtgttcttctccccgcccactggcctctcttctcttctcttt
ttaaaattccccacagctttgttcctggcttttctccgggaactgcttct
catatgtgagcatgcctgaagatcacctggggatcttgttaaaatgaatc
tgattccatgggcctggactgaagcaccatcctagcaagcagctggctga
tgctggcgctggctgctggtggaccacactcaaatggctgctggtggacc
acactcaaatggctgctggtggatcacactcagaataccatgaggctaga
aacacatcatcaagtatggtagccaccaagtgtatgtaactgaagtccag
ggaaattgcaaatgcaattcatttctcactggcactagccacatgttgag
tgctccacagccctacgtggctatggagaggctaatgctgctccctccac
agaacggcgagggttgttggaactacagccctaagtgatgtgttactatc
cctgtcatggggctgtgtctcagaataggcaaaactcaaagtgagaatgt
gctcagttggtagagtgctgctagcatgcaaaagttctgggttgattccc
aggaccaaataaacaagcatgctgcacacagtgaccccagcacttgcaag
tgggaagccagaagatcgctctcacctacatagttaaggtcagcttgggt
tcagaagactctgttctcaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_54647779_54648959
seq2: B6Ng01-262O05.g_66_1236

seq1  GAATTCACTCACCACCTGCCAATCCCGCACTGCAGGAGGGGCATGCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCACCACCTGCCAATCCCGCACTGCAGGAGGGGCATGCCACA  50

seq1  CTAACTTATCTCCCTACAGGGAGACATAAAATTTGCCTGTCCATAAAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTATCTCCCTACAGGGAGACATAAAATTTGCCTGTCCATAAAGCA  100

seq1  TTTTATTATTCAGTCTGAACACTGTGTTTCATCGCCGTGTAGCATGTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTATTCAGTCTGAACACTGTGTTTCATCGCCGTGTAGCATGTGTC  150

seq1  TCGTTATACCAGACACTAACATGTATCTGAAAATGAAATTCTGGAAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTATACCAGACACTAACATGTATCTGAAAATGAAATTCTGGAAGGTT  200

seq1  ACCCTGGCTTGTGGAATGCCTGCAGTGTGGTCTTGGAATGGTGGATATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCTTGTGGAATGCCTGCAGTGTGGTCTTGGAATGGTGGATATCC  250

seq1  GAGCCCTAGCTCTGCATTCATGGAGCCCTTAGTGGGAAGAGGGGGCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAGCTCTGCATTCATGGAGCCCTTAGTGGGAAGAGGGGGCTTGT  300

seq1  GCACTGTGGTAGAGGTGGTGTCGATGGTCCTCACTGTGCTAGCTGTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTGGTAGAGGTGGTGTCGATGGTCCTCACTGTGCTAGCTGTTTCT  350

seq1  CTGTGTTGTAGGCTGGAGAGGAAAACCCTGAAGTCAAGGTCAAGGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGTAGGCTGGAGAGGAAAACCCTGAAGTCAAGGTCAAGGGCAGA  400

seq1  GTTGAAAACCCTCAGTGAGCAGAAAGAGAATTCTGTGCTAAATGAGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAACCCTCAGTGAGCAGAAAGAGAATTCTGTGCTAAATGAGTAGA  450

seq1  GACCTCGAGTGTTCTTCTCCCCGCCCACTGGCCTCTCTTCTCTTCTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCGAGTGTTCTTCTCCCCGCCCACTGGCCTCTCTTCTCTTCTCTTT  500

seq1  TTAAAATTCCCCACAGCTTTGTTCCTGGCTTTTCTCCGGGAACTGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTCCCCACAGCTTTGTTCCTGGCTTTTCTCCGGGAACTGCTTCT  550

seq1  CATATGTGAGCATGCCTGAAGATCACCTGGGGATCTTGTTAAAATGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTGAGCATGCCTGAAGATCACCTGGGGATCTTGTTAAAATGAATC  600

seq1  TGATTCCATGGGCCTGGACTGAAGCACCATCCTAGCAAGCAGCTGGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCATGGGCCTGGACTGAAGCACCATCCTAGCAAGCAGCTGGCTGA  650

seq1  TGCTGGCGCTGGCTGCTGGTGGACCACACTCAAATGGCTGCTGGTGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCGCTGGCTGCTGGTGGACCACACTCAAATGGCTGCTGGTGGACC  700

seq1  ACACTCAAATGGCTGCTGGTGGATCACACTCAGAATACCATGAGGCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAAATGGCTGCTGGTGGATCACACTCAGAATACCATGAGGCTAGA  750

seq1  AACACATCATCAAGTATGGTAGCCACCAAGTGTATGTAACTGAAGTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCATCAAGTATGGTAGCCACCAAGTGTATGTAACTGAAGTCCAG  800

seq1  GGAAATTGCAAATGCAATTCATTTCTCACTGGCACTAGCCACATGTTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTGCAAATGCAATTCATTTCTCACTGGCACTAGCCACATGTTGAG  850

seq1  TGCTCCACAGCCCTACGTGGCTATGGAGAGGCTAATGCTGCTCCCTCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCACAGCCCTACGTGGCTATGGAGAGGCTAATGCTGCTCCCTCCAC  900

seq1  AGAACGGCGA-GGTTGTTGGAACTACAGCCCTAAGGTGATGTGTTAACTA  949
      |||||||||| ||||||||||||||||||||||| |||||||||| ||||
seq2  AGAACGGCGAGGGTTGTTGGAACTACAGCCCTAA-GTGATGTGTT-ACTA  948

seq1  TCCCTGTCATGGGGCTGTGTCTCAGAATAGGCAAAACTCAAAAGTGAGAA  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCCTGTCATGGGGCTGTGTCTCAGAATAGGCAAAACTC-AAAGTGAGAA  997

seq1  TGTGGCTCAGTTGGTAGAGTGCTTGCCTAGCATGCAAAAAGTCCTGGGTT  1049
      ||| |||||||||||||||||||   ||||||||| |||||| ||||| |
seq2  TGT-GCTCAGTTGGTAGAGTGCT--GCTAGCATGC-AAAAGTTCTGGG-T  1042

seq1  TGATTCCCAGGACCAAATAAACAAAGCATGCTGCCACACAGTGACCCCAG  1099
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  TGATTCCCAGGACCAAATAAAC-AAGCATGCTG-CACACAGTGACCCCAG  1090

seq1  CACTTGGAAAGTGGAGGCAAGAGGATCGTCTTCAACTACATAGTTTAAGG  1149
      |||||| ||   ||| || ||| |||||   ||| |||||||| ||||||
seq2  CACTTGCAAGTGGGAAGCCAGAAGATCGCTCTCACCTACATAG-TTAAGG  1139

seq1  CCAGCTTGGGTTTCAGAAGACTCTG-TCTCAAT  1181
       ||||||||| |||||||||||||| |||||||
seq2  TCAGCTTGGG-TTCAGAAGACTCTGTTCTCAAT  1171