BAC Information

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BAC

Clone NameB6Ng01-263H03
Chromosome9 (Build37)
Map Location 80,024,199 - 80,127,457
singlet/doubletdoublet
Overlap geneMyo6
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249
Downstream geneImpg1, EG666534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263H03.bB6Ng01-263H03.g
ACCGA067612GA067613
length1,218252
definitionB6Ng01-263H03.b B6Ng01-263H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,126,241 - 80,127,457)(80,024,199 - 80,024,465)
sequence
gaattccagttagtcaaattaaaatttataaaagagaatataatttttaa
tacatgaattcttaattttaaaacaatcttaggaaactaatgctctatac
agactgaaaactagtctatttgattgaacaaaagaatgaagctcagtggg
ctctgtgagaggcagcacttctagatggcaacttgaaaagactcaccttt
cgtatcatctctacttttatgaatctaaattaaagttttctcacttatgg
acaaagacatgtgtcagatatccactaagtcactgcttaaaacagaaaaa
acagtaacagaagtaacttaaaagcctattcattaaattgtattacaccc
ataaaatagaatgtaatacattgattagagagctggaatttaatctatcc
ggcataaaaatatatctatcccataatgtatgctgattaaaggaacatac
agagaccatcgctgttttctttgcagtaccaaggactgaacccagggcct
tgcacgtgcttaaacaagtattctaccactggactaagctacagccctcc
ctagcccgtggctatatagttcaggctggctttggatttagttctcaggt
ctgctcatagggaaaaaaaaaggtaaggtttggttggcactgtcacaatt
tttgacaatgaaatggtgtcacctgttaagctacaacttagctgaccgtg
ctaacatacactcttcgtgaagcaggactcctgtaacacaccagtaagcc
catgctctgccaatctaaacacacacaactgcagctgcacacgcttgaca
aataaacactaggtgctcattggggagatcagtatattacagtaaaaaaa
tcctaaaagggaaaagtcgcactcaaagtaacaaaactcatcttaaagac
agcatacgatgcaactactgtgtctttcacactatatctctgttattaag
taacacctgactaagaacatgctagaaattgaaccctctgtaatgtatta
tgcaaggattttcaaataaatgtagctactgtgcaaaaagattccctcat
tatttcttatgcagaaatactcgagcatgcacctattgtgacttgcagta
cttgttttaatcatcaaaaataaattttttgtattctggatggactatgc
cattccttttccatcatgatattgaattcacacacttagaaaaaaaactg
gatttgagggaaccaaaa

agagatgttaagtgaatgagtttgaccttatgactagacaccacacaagt
attttaaaacagagagaaaatgtttatttcaaccagaatttgatattcca
tttggtaatacattctaatctccctttccctttcccttcccttcccttcc
cttcccttcccttcccttcccttcccttcccttcccttcccttcccttcc
cttcccttcccttcccttcccttcccttcccttctcctccccctcctccc
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_80126241_80127457
seq2: B6Ng01-263H03.b_44_1261 (reverse)

seq1  TTTTGGTTCCCTCAAAATCCTGTTTTTTTTTCTAGTGTGT--ATTAGATT  48
      ||||||||||||| |||||| |||||||||   |||||||  |||  || 
seq2  TTTTGGTTCCCTC-AAATCCAGTTTTTTTTCTAAGTGTGTGAATTCAAT-  48

seq1  AATTCATGATTGAAAA-GAAT-GCATAGTCTAT-CAG-ATAC-AAAAATT  93
         ||||||| ||||| |||| |||||||| || ||| |||| |||||||
seq2  --ATCATGATGGAAAAGGAATGGCATAGTCCATCCAGAATACAAAAAATT  96

seq1  TATTTTTGATTGATTTAAAACAAGTACTGCAAAGTCAC-ATA-GTGCATG  141
      ||||||||| ||| |||||||||||||||| ||||||| ||| |||||||
seq2  TATTTTTGA-TGA-TTAAAACAAGTACTGC-AAGTCACAATAGGTGCATG  143

seq1  CTCGAGGTATTTCTGCATA--GAATAATGAGGGAATCTTTTTGCACAGTT  189
      ||||| |||||||||||||   |||||||||||||||||||||||||| |
seq2  CTCGA-GTATTTCTGCATAAGAAATAATGAGGGAATCTTTTTGCACAG-T  191

seq1  AGCTACATTTATTTGAAAATCCCTTGCAT-ATACATTACAGAGGGGTTCA  238
      |||||||||||||||||||| |||||||| |||||||||||| |||||||
seq2  AGCTACATTTATTTGAAAAT-CCTTGCATAATACATTACAGA-GGGTTCA  239

seq1  ATTTCTAGCATGTTCTTAGTCAGGTGTTACTTAATAACAGAGATATAGTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAGCATGTTCTTAGTCAGGTGTTACTTAATAACAGAGATATAGTG  289

seq1  TGAAAGACACAGTAGTTGCATCGTATGCTGTCTTTAAGATGAGTTTTGTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGACACAGTAGTTGCATCGTATGCTGTCTTTAAGATGAGTTTTGTT  339

seq1  ACTTTGAGTGCGACTTTTCCCTTTTAGGATTTTTTTACTGTAATATACTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGTGCGACTTTTCCCTTTTAGGATTTTTTTACTGTAATATACTG  389

seq1  ATCTCCCCAATGAGCACCTAGTGTTTATTTGTCAAGCGTGTGCAGCTGCA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCCAATGAGCACCTAGTGTTTATTTGTCAAGCGTGTGCAGCTGCA  439

seq1  GTTGTGTGTGTTTAGATTGGCAGAGCATGGGCTTACTGGTGTGTTACAGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGTGTTTAGATTGGCAGAGCATGGGCTTACTGGTGTGTTACAGG  489

seq1  AGTCCTGCTTCACGAAGAGTGTATGTTAGCACGGTCAGCTAAGTTGTAGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGCTTCACGAAGAGTGTATGTTAGCACGGTCAGCTAAGTTGTAGC  539

seq1  TTAACAGGTGACACCATTTCATTGTCAAAAATTGTGACAGTGCCAACCAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGTGACACCATTTCATTGTCAAAAATTGTGACAGTGCCAACCAA  589

seq1  ACCTTACCTTTTTTTTTCCCTATGAGCAGACCTGAGAACTAAATCCAAAG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACCTTTTTTTTTCCCTATGAGCAGACCTGAGAACTAAATCCAAAG  639

seq1  CCAGCCTGAACTATATAGCCACGGGCTAGGGAGGGCTGTAGCTTAGTCCA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGAACTATATAGCCACGGGCTAGGGAGGGCTGTAGCTTAGTCCA  689

seq1  GTGGTAGAATACTTGTTTAAGCACGTGCAAGGCCCTGGGTTCAGTCCTTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGAATACTTGTTTAAGCACGTGCAAGGCCCTGGGTTCAGTCCTTG  739

seq1  GTACTGCAAAGAAAACAGCGATGGTCTCTGTATGTTCCTTTAATCAGCAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCAAAGAAAACAGCGATGGTCTCTGTATGTTCCTTTAATCAGCAT  789

seq1  ACATTATGGGATAGATATATTTTTATGCCGGATAGATTAAATTCCAGCTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGGGATAGATATATTTTTATGCCGGATAGATTAAATTCCAGCTC  839

seq1  TCTAATCAATGTATTACATTCTATTTTATGGGTGTAATACAATTTAATGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATCAATGTATTACATTCTATTTTATGGGTGTAATACAATTTAATGA  889

seq1  ATAGGCTTTTAAGTTACTTCTGTTACTGTTTTTTCTGTTTTAAGCAGTGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTTTAAGTTACTTCTGTTACTGTTTTTTCTGTTTTAAGCAGTGA  939

seq1  CTTAGTGGATATCTGACACATGTCTTTGTCCATAAGTGAGAAAACTTTAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGGATATCTGACACATGTCTTTGTCCATAAGTGAGAAAACTTTAA  989

seq1  TTTAGATTCATAAAAGTAGAGATGATACGAAAGGTGAGTCTTTTCAAGTT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTCATAAAAGTAGAGATGATACGAAAGGTGAGTCTTTTCAAGTT  1039

seq1  GCCATCTAGAAGTGCTGCCTCTCACAGAGCCCACTGAGCTTCATTCTTTT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTAGAAGTGCTGCCTCTCACAGAGCCCACTGAGCTTCATTCTTTT  1089

seq1  GTTCAATCAAATAGACTAGTTTTCAGTCTGTATAGAGCATTAGTTTCCTA  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATCAAATAGACTAGTTTTCAGTCTGTATAGAGCATTAGTTTCCTA  1139

seq1  AGATTGTTTTAAAATTAAGAATTCATGTATTAAAAATTATATTCTCTTTT  1188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTTTAAAATTAAGAATTCATGTATTAAAAATTATATTCTCTTTT  1189

seq1  ATAAATTTTAATTTGACTAACTGGAATTC  1217
      |||||||||||||||||||||||||||||
seq2  ATAAATTTTAATTTGACTAACTGGAATTC  1218


seq1: chr9_80024199_80024465
seq2: B6Ng01-263H03.g_71_322

seq1  AGAGATGTTAAGTGAATGAGTTTGACCTTATGACTAGACACCACACAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTTAAGTGAATGAGTTTGACCTTATGACTAGACACCACACAAGT  50

seq1  ATTTTAAAACAGAGAGAAAATGTTTATTTCAACCAGAATTTGATATTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAACAGAGAGAAAATGTTTATTTCAACCAGAATTTGATATTCCA  100

seq1  TTTGGTAATACATTCTAATCTCCCTTTCCCTTTCCCTTCCCTTCCCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAATACATTCTAATCTCCCTTTCCCTTTCCCTTCCCTTCCCTTCC  150

seq1  CTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCC  200

seq1  CTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCCTTCCCTTCCTTCC  250
      |||||||||||||||||||||||||||||||||| |              
seq2  CTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCTC--------------  236

seq1  TCTCCCCCTCCTCCCTC  267
       ||||||||||||||||
seq2  -CTCCCCCTCCTCCCTC  252


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