BAC Information

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BAC

Clone NameB6Ng01-263O12
Chromosome9 (Build37)
Map Location 122,425,683 - 122,561,977
singlet/doubletdoublet
Overlap gene9530059O14Rik
Upstream geneLyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204
Downstream geneLOC666218, LOC671232, D9Ertd402e, Zfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15, Tmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263O12.bB6Ng01-263O12.g
ACCGA067954GA067955
length1,2011,195
definitionB6Ng01-263O12.b B6Ng01-263O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,425,683 - 122,426,873)(122,560,776 - 122,561,977)
sequence
gaattctcaagttatttcaatacaggaccaaagtcatcggtagaaagtaa
gagaagggaaagcctgagaagaggaggctgggatttctgggcagattcac
tgtgagctggaaatgtgtgctcttgggttccagtaaatctgtgtcaccca
cacagcaatctctgggggagaactggagagccaccctgcagacatcacct
tgaccatgaaacgggcagtttttatatttgtccagttctgtgtgttcttg
cagctgcactaaccctcaggtcagagaaacccaagaggaatggtataatc
aaaaaatgttttattttcctcatgtgactaagagtccagatccgtggcct
cgagctgcctaacaaccaccaggaaccaagcctgcaatgccctgagcttc
tgtagatgatgcggatgcaatctgtgccgtgttgtcttttaagacagggt
ttcactctgcaaccctgtcttggaacttgctatgtaaatcaggctggact
tgaattcacagagatcctcctgcctctgcctttcaagtgctggggttaaa
gttgtgtcccaccatggtctagcttttacctttttttaaagaaaaaaaaa
atcataaagtaaccttttgaacttgcttatcagtggcagagcagttgcag
atgtgtgatgagccaaagagagaggaacccttggagatgtaaatgaaccc
caggaaaagctaagaagtgaaaagccaagttgacagagagcactacctgc
tttaaaaggctcgcccaggaattatgcacccttctggggatagtgagtag
agaggtagacctcctagagaatgggctgagaaatatcttggcttctttgg
tgttcatagcatgaatactatgggttggccaggacaagcacagagacaga
ctctctaagtcagtcctctcatctcttataattctccctgaatacttgac
ctataggtatcgagagagtcacagaaccacagctgaggtcttcagttgat
ctgtagccataggtgctgcctccactgtgactcaaccatccccactgtgt
gccttgttcctggagtgtctgggccattccaggacttgccaggggagaag
gtgcctgctagatcaccttgtttaatattacgttcctccagctggagaac
ctttccccacccttaagcttcacttaggagtgccgtgaatcatctaaagt
c
gaattcaataaagaaaaagatgatgaaagagaaacaagttggtttgatcg
ttagaccctaaagatgtcacaattaataaagaagaactccaaatcaaaat
aaccctcctccaaaaggaaaaccagacagcaaacaaaaccttaaaaaggt
tgaacaatgcaaatcaagagtaagcagaacaatacaggcatggatttgat
tttcaaaataacaacacgcatgtctgtgcaagtcctaatgcatatgaaag
ggtaggtaagaaagtggaagcaatattatatgaacatataaatggactag
cccagagagctaggaagcaaagctgcaggcagaaagtcccacatgcaggt
gaaagttttaggacttagcactttctttttcctttggcaatatccaaagc
acacgtttgcctctgtgctggcttgaagagacttgaggttacgaaaagct
ttttctgttggctatacaaagctcaagagacatgtattccccaagcatct
agcaaacagcagagcatagaccacatgacaactcaaaatacctaccaagg
cattagtaggaaggaaaaaaaaaaagctattaattctatagtgcgctgta
gaagacggcccatttgaaaagagtcagcagtttagcaacaacaagggaca
taagcaaaaaaccccagtacagtttcctcaacccaaatgaagactgtctt
accagaacaacacagtcagacctagaaggaacagggtgatcagcactgga
catgtgtccatcccttgggcccatgtcacacctggtcctggtcagagaat
gaaccgtggtgtaagtattaggaaggaagaggaaacagctgtttgcaaag
tcatcgtgtgtcatttaactaggaaggcatgctgggaagtgcctcatgag
gctggtccatagatgaacattataaagtatgtgtgcacaaaggacctgga
tgtgacatcacaaggtggtatgatgtcatgggagcaccaatgcccatagt
cacacacagtctgaacagtggctacaccagtgtaggaggtataaatgggg
agtgggtggaggacccctttaactcatgtgacatgcagggacttgttcag
taactaaccttccagcagctccatgctgcaagtggatctactacctaaag
tgaccgctcttgcacacacccatgttgcctgaagtgttcttgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122425683_122426873
seq2: B6Ng01-263O12.b_45_1245

seq1  GAATTCTCAAGTTATTTCAATACAGGACCAAAGTCATCGGTAGAAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGTTATTTCAATACAGGACCAAAGTCATCGGTAGAAAGTAA  50

seq1  GAGAAGGGAAAGCCTGAGAAGAGGAGGCTGGGATTTCTGGGCAGATTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGAAAGCCTGAGAAGAGGAGGCTGGGATTTCTGGGCAGATTCAC  100

seq1  TGTGAGCTGGAAATGTGTGCTCTTGGGTTCCAGTAAATCTGTGTCACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCTGGAAATGTGTGCTCTTGGGTTCCAGTAAATCTGTGTCACCCA  150

seq1  CACAGCAATCTCTGGGGGAGAACTGGAGAGCCACCCTGCAGACATCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATCTCTGGGGGAGAACTGGAGAGCCACCCTGCAGACATCACCT  200

seq1  TGACCATGAAACGGGCAGTTTTTATATTTGTCCAGTTCTGTGTGTTCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGAAACGGGCAGTTTTTATATTTGTCCAGTTCTGTGTGTTCTTG  250

seq1  CAGCTGCACTAACCCTCAGGTCAGAGAAACCCAAGAGGAATGGTATAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCACTAACCCTCAGGTCAGAGAAACCCAAGAGGAATGGTATAATC  300

seq1  AAAAAATGTTTTATTTTCCTCATGTGACTAAGAGTCCAGATCCGTGGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTTTTATTTTCCTCATGTGACTAAGAGTCCAGATCCGTGGCCT  350

seq1  CGAGCTGCCTAACAACCACCAGGAACCAAGCCTGCAATGCCCTGAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTGCCTAACAACCACCAGGAACCAAGCCTGCAATGCCCTGAGCTTC  400

seq1  TGTAGATGATGCGGATGCAATCTGTGCCGTGTTGTCTTTTAAGACAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGATGCGGATGCAATCTGTGCCGTGTTGTCTTTTAAGACAGGGT  450

seq1  TTCACTCTGCAACCCTGTCTTGGAACTTGCTATGTAAATCAGGCTGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGCAACCCTGTCTTGGAACTTGCTATGTAAATCAGGCTGGACT  500

seq1  TGAATTCACAGAGATCCTCCTGCCTCTGCCTTTCAAGTGCTGGGGTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCACAGAGATCCTCCTGCCTCTGCCTTTCAAGTGCTGGGGTTAAA  550

seq1  GTTGTGTCCCACCATGGTCTAGCTTTTACCTTTTTTTAAAGAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTCCCACCATGGTCTAGCTTTTACCTTTTTTTAAAGAAAAAAAAA  600

seq1  ATCATAAAGTAACCTTTTGAACTTGCTTATCAGTGGCAGAGCAGTTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAGTAACCTTTTGAACTTGCTTATCAGTGGCAGAGCAGTTGCAG  650

seq1  ATGTGTGATGAGCCAAAGAGAGAGGAACCCTTGGAGATGTAAATGAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGATGAGCCAAAGAGAGAGGAACCCTTGGAGATGTAAATGAACCC  700

seq1  CAGGAAAAGCTAAGAAGTGAAAAGCCAAGTTGACAGAGAGCACTACCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGCTAAGAAGTGAAAAGCCAAGTTGACAGAGAGCACTACCTGC  750

seq1  TTTAAAAGGCTCGCCCAGGAATTATGCACCCTTCTGGGGATAGTGAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGGCTCGCCCAGGAATTATGCACCCTTCTGGGGATAGTGAGTAG  800

seq1  AGAGGTAGACCTCCTAGAGAATGGGCTGAGAAATATCTTGGCTTCTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGACCTCCTAGAGAATGGGCTGAGAAATATCTTGGCTTCTTTGG  850

seq1  TGTTCATAGCATGAATACTAT-GGTTGGCCAGGACAAGCACAGAGACAGA  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTCATAGCATGAATACTATGGGTTGGCCAGGACAAGCACAGAGACAGA  900

seq1  CTCTCTAAGTCAGTCCTCTCATCTCTTATAATTCTCCCTGAATACTTGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTAAGTCAGTCCTCTCATCTCTTATAATTCTCCCTGAATACTTGAC  950

seq1  CTATA-GTATCGAGAGAGTCACAGAACCACAGCTGAGGTCTTCAGTTGAA  998
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  CTATAGGTATCGAGAGAGTCACAGAACCACAGCTGAGGTCTTCAGTTG-A  999

seq1  TCTGTAGCCATAGGTGCTGCCT-CACTGTGACTCAACCATCCCCACTGTG  1047
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGTAGCCATAGGTGCTGCCTCCACTGTGACTCAACCATCCCCACTGTG  1049

seq1  TGCCTTGTTCCT-GAGTGTCTGGCCAATTCCAGGACTTTGCCA-GGGAG-  1094
      |||||||||||| |||||||||| | |||||||||| |||||| ||||| 
seq2  TGCCTTGTTCCTGGAGTGTCTGGGCCATTCCAGGAC-TTGCCAGGGGAGA  1098

seq1  AGGTG-CTGCTAGATCACC-TGTTTAATATAACGTT-CTCCAGCT-GAG-  1139
      ||||| ||||||||||||| |||||||||| ||||| |||||||| ||| 
seq2  AGGTGCCTGCTAGATCACCTTGTTTAATATTACGTTCCTCCAGCTGGAGA  1148

seq1  ACCTTT-CCCACCCTTAGGCTTCACTTTAGAGTGCC-TGATTCCATCTAA  1187
      |||||| |||||||||| |||||||||  ||||||| ||| | |||||||
seq2  ACCTTTCCCCACCCTTAAGCTTCACTTAGGAGTGCCGTGAAT-CATCTAA  1197

seq1  AGTC  1191
      ||||
seq2  AGTC  1201

seq1: chr9_122560776_122561977
seq2: B6Ng01-263O12.g_69_1263 (reverse)

seq1  TTTC-AGAACAC-TCAGGC-ACATGGGTGTGTGCAAGAGGCTGTTCACTT  47
      |||| ||||||| |||||| |||||||||||||||||||   | |||| |
seq2  TTTCAAGAACACTTCAGGCAACATGGGTGTGTGCAAGAG--CGGTCAC-T  47

seq1  TTAGTTAGGTAGATCCCACTGGCAGCATGGGGAAGCTGCTGGAAGTTTTA  97
      |||| || |||||| ||||| |||||||||   ||||||||||||  |||
seq2  TTAGGTA-GTAGAT-CCACTTGCAGCATGG---AGCTGCTGGAAG-GTTA  91

seq1  GTTACCTGAC-AGTCCCTGGCATGTCACATGAGTTAAAGGGTGTCCT-CA  145
      |||||   || ||||||| |||||||||||||||||||||| ||||| ||
seq2  GTTACTGAACAAGTCCCT-GCATGTCACATGAGTTAAAGGG-GTCCTCCA  139

seq1  CCCACTCCCAATTTTATACCTCCTACACT-GTGTAGCCACTGTTCAGACT  194
      ||||||||| | ||||||||||||||||| ||||||||||||||||||||
seq2  CCCACTCCCCA-TTTATACCTCCTACACTGGTGTAGCCACTGTTCAGACT  188

seq1  GTGTGTGACTATGGGCATTTGTGCTTCCCATGACATCATACCACCTTGTG  244
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  GTGTGTGACTATGGGCATTGGTGC-TCCCATGACATCATACCACCTTGTG  237

seq1  ATGTCACATCCAGGTCCTTTGTGCACACATACTTTATAATGTTCATCTAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACATCCAGGTCCTTTGTGCACACATACTTTATAATGTTCATCTAT  287

seq1  GGACCAGCCTCATGAGGCACTTCCCAGCATGCCTTCCTAGTTAAATGACA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCCTCATGAGGCACTTCCCAGCATGCCTTCCTAGTTAAATGACA  337

seq1  CACGATGACTTTGCAAACAGCTGTTTCCTCTTCCTTCCTAATACTTACAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATGACTTTGCAAACAGCTGTTTCCTCTTCCTTCCTAATACTTACAC  387

seq1  CACGGTTCATTCTCTGACCAGGACCAGGTGTGACATGGGCCCAAGGGATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTTCATTCTCTGACCAGGACCAGGTGTGACATGGGCCCAAGGGATG  437

seq1  GACACATGTCCAGTGCTGATCACCCTGTTCCTTCTAGGTCTGACTGTGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGTCCAGTGCTGATCACCCTGTTCCTTCTAGGTCTGACTGTGTT  487

seq1  GTTCTGGTAAGACAGTCTTCATTTGGGTTGAGGAAACTGTACTGGGGTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGTAAGACAGTCTTCATTTGGGTTGAGGAAACTGTACTGGGGTTT  537

seq1  TTTGCTTATGTCCCTTGTTGTTGCTAAACTGCTGACTCTTTTCAAATGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTATGTCCCTTGTTGTTGCTAAACTGCTGACTCTTTTCAAATGGG  587

seq1  CCGTCTTCTACAGCGCACTATAGAATTAATAGCTTTTTTTTTTTCCTTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCTTCTACAGCGCACTATAGAATTAATAGCTTTTTTTTTTTCCTTCC  637

seq1  TACTAATGCCTTGGTAGGTATTTTGAGTTGTCATGTGGTCTATGCTCTGC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATGCCTTGGTAGGTATTTTGAGTTGTCATGTGGTCTATGCTCTGC  687

seq1  TGTTTGCTAGATGCTTGGGGAATACATGTCTCTTGAGCTTTGTATAGCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTAGATGCTTGGGGAATACATGTCTCTTGAGCTTTGTATAGCCA  737

seq1  ACAGAAAAAGCTTTTCGTAACCTCAAGTCTCTTCAAGCCAGCACAGAGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAAAGCTTTTCGTAACCTCAAGTCTCTTCAAGCCAGCACAGAGGC  787

seq1  AAACGTGTGCTTTGGATATTGCCAAAGGAAAAAGAAAGTGCTAAGTCCTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGTGCTTTGGATATTGCCAAAGGAAAAAGAAAGTGCTAAGTCCTA  837

seq1  AAACTTTCACCTGCATGTGGGACTTTCTGCCTGCAGCTTTGCTTCCTAGC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCACCTGCATGTGGGACTTTCTGCCTGCAGCTTTGCTTCCTAGC  887

seq1  TCTCTGGGCTAGTCCATTTATATGTTCATATAATATTGCTTCCACTTTCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCTAGTCCATTTATATGTTCATATAATATTGCTTCCACTTTCT  937

seq1  TACCTACCCTTTCATATGCATTAGGACTTGCACAGACATGCGTGTTGTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCCTTTCATATGCATTAGGACTTGCACAGACATGCGTGTTGTTA  987

seq1  TTTTGAAAATCAAATCCATGCCTGTATTGTTCTGCTTACTCTTGATTTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATCAAATCCATGCCTGTATTGTTCTGCTTACTCTTGATTTGC  1037

seq1  ATTGTTCAACCTTTTTAAGGTTTTGTTTGCTGTCTGGTTTTCCTTTTGGA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCAACCTTTTTAAGGTTTTGTTTGCTGTCTGGTTTTCCTTTTGGA  1087

seq1  GGAGGGTTATTTTGATTTGGAGTTCTTCTTTATTAATTGTGACATCTTTA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTTATTTTGATTTGGAGTTCTTCTTTATTAATTGTGACATCTTTA  1137

seq1  GGGTCTAACGATCAAACCAACTTGTTTCTCTTTCATCATCTTTTTCTTTA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTAACGATCAAACCAACTTGTTTCTCTTTCATCATCTTTTTCTTTA  1187

seq1  TTGAATTC  1202
      ||||||||
seq2  TTGAATTC  1195