BAC Information

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BAC

Clone NameB6Ng01-264F07
Chromosome9 (Build37)
Map Location 89,800,098 - 89,951,405
singlet/doubletdoublet
Overlap geneRasgrf1, Ctsh
Upstream geneLOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
Downstream geneMorf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264F07.bB6Ng01-264F07.g
ACCGA068262GA068263
length6331,057
definitionB6Ng01-264F07.b B6Ng01-264F07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,950,773 - 89,951,405)(89,800,098 - 89,801,229)
sequence
gaattcttcagtgttggtggatgaaagcacagaggacctcagacccatcc
caagtttactctgatttaaatgaaattcatttcatcaatttattttttta
catgtgtgtgcacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gcgcgcgcacagtgtatggtgcactgtatactcacagagatgtcccaagt
tttcctttcttgcactccactttactgaggaaggggtctttaattgaacc
cagagctcaccgattctaggtagtctaggtagcttgtttaccccaaaacc
cttccattgttgcctcctgaatacagtgattacaggtagctgctatgtct
gaccagcttttacacagtttgggggatgactctggctctcagacctttat
actaagggctttacagactgagctatctctttaaaatgaatgtttttaca
tagggcttgacacatgcctggaatctcagtagttggaggatagacaagaa
gatcaggagttcaaggtcatccttggctagtaaatgaattaaaaacagaa
acccaaaaaggctggaggggctctcagggtcccatctctgcctgaggatt
tataggttagttaatagttgtgggggtggggga
gaattctaatggtaggaagaaatatttccacgtactacaaaggagataaa
gaaactgagcctataaaatgtcagatgccttagaaaaccattttgaggag
tatgtttctatctgaaaaatgcaaaagggttttatataataaaaggtttc
aagaagaatctttgatggtgtccctgggtgatcttatttatttatttatt
atttatttcttttacaaagaaatccatcagttttaggaacaggcagaaca
acatggctaatacaaactaaaagtataggctccctgttccccactaggtt
cctggtcaagatgatcagtggaacaacctaaaattagagttggaatttcc
acaagcaaatcccacatgacaaaagttctctggttccataaacttaatgt
ttttatttcaaagctcttcctttttaatatgttgtcaaaggggcaaaagt
tctctaagtgcacattcacacacacacacacacacacacacacacacaca
cacacacacacacagagtgaggccttagtttttccacctggaaaaccggg
ttgttaacctctatttgaggctagtcagcctctgccctttcctggagaat
aggctaatttctttcccctgtggacagtgtgcttaatctctgagtgtgcc
cctttcgagcaactatgacaacatactgtgttctctgattttggcaggca
gaggagcgatacgaattaacatgtatttattacagatagggcagccatga
taaaccaaagaatttcatcccactctctagtttgggggaccaaggtgatt
cctggggttatttgcatggcatgggtaactcaaaggcagctatatcacta
acccacaccttctcccaataatgggtgcatctctggagctccttgcccga
cttgctggcagttctccaaaggtcttctcttacagttacacccgctcgag
caactgctcatctgatcctgcagaactctgatgagtctccttaggtacaa
gcttaccaaagctgatggtagttttgtactgaagaaatgacggaatggaa
ggaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89950773_89951405
seq2: B6Ng01-264F07.b_45_677 (reverse)

seq1  TCCCCCACCCCCACAACTATTAACTAACCTATAAATCCTCAGGCAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCCCACAACTATTAACTAACCTATAAATCCTCAGGCAGAGAT  50

seq1  GGGACCCTGAGAGCCCCTCCAGCCTTTTTGGGTTTCTGTTTTTAATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCTGAGAGCCCCTCCAGCCTTTTTGGGTTTCTGTTTTTAATTCAT  100

seq1  TTACTAGCCAAGGATGACCTTGAACTCCTGATCTTCTTGTCTATCCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGCCAAGGATGACCTTGAACTCCTGATCTTCTTGTCTATCCTCCA  150

seq1  ACTACTGAGATTCCAGGCATGTGTCAAGCCCTATGTAAAAACATTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGAGATTCCAGGCATGTGTCAAGCCCTATGTAAAAACATTCATTT  200

seq1  TAAAGAGATAGCTCAGTCTGTAAAGCCCTTAGTATAAAGGTCTGAGAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGATAGCTCAGTCTGTAAAGCCCTTAGTATAAAGGTCTGAGAGCC  250

seq1  AGAGTCATCCCCCAAACTGTGTAAAAGCTGGTCAGACATAGCAGCTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCATCCCCCAAACTGTGTAAAAGCTGGTCAGACATAGCAGCTACCT  300

seq1  GTAATCACTGTATTCAGGAGGCAACAATGGAAGGGTTTTGGGGTAAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCACTGTATTCAGGAGGCAACAATGGAAGGGTTTTGGGGTAAACAA  350

seq1  GCTACCTAGACTACCTAGAATCGGTGAGCTCTGGGTTCAATTAAAGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTAGACTACCTAGAATCGGTGAGCTCTGGGTTCAATTAAAGACCC  400

seq1  CTTCCTCAGTAAAGTGGAGTGCAAGAAAGGAAAACTTGGGACATCTCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCAGTAAAGTGGAGTGCAAGAAAGGAAAACTTGGGACATCTCTGT  450

seq1  GAGTATACAGTGCACCATACACTGTGCGCGCGCACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATACAGTGCACCATACACTGTGCGCGCGCACACACACACACACACA  500

seq1  CACACACACACACACACACTGTGCACACACATGTAAAAAAATAAATTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACTGTGCACACACATGTAAAAAAATAAATTGAT  550

seq1  GAAATGAATTTCATTTAAATCAGAGTAAACTTGGGATGGGTCTGAGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAATTTCATTTAAATCAGAGTAAACTTGGGATGGGTCTGAGGTCC  600

seq1  TCTGTGCTTTCATCCACCAACACTGAAGAATTC  633
      |||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTTCATCCACCAACACTGAAGAATTC  633

seq1: chr9_89800098_89801229
seq2: B6Ng01-264F07.g_65_1121

seq1  GAATTCTAATGGTAGGAAGAAATATTTCCACGTACTACAAAGGAGATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGGTAGGAAGAAATATTTCCACGTACTACAAAGGAGATAAA  50

seq1  GAAACTGAGCCTATAAAATGTCAGATGCCTTAGAAAACCATTTTGAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGAGCCTATAAAATGTCAGATGCCTTAGAAAACCATTTTGAGGAG  100

seq1  TATGTTTCTATCTGAAAAATGCAAAAGGGTTTTATATAATAAAAGGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTATCTGAAAAATGCAAAAGGGTTTTATATAATAAAAGGTTTC  150

seq1  AAGAAGAATCTTTGATGGTGTCCCTGGGTGATCTTATTTATTTATTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAATCTTTGATGGTGTCCCTGGGTGATCTTATTTATTTATTTATT  200

seq1  ATTTATTTCTTTTACAAAGAAATCCATCAGTTTTAGGAACAGGCAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTCTTTTACAAAGAAATCCATCAGTTTTAGGAACAGGCAGAACA  250

seq1  ACATGGCTAATACAAACTAAAAGTATAGGCTCCCTGTTCCCCACTAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCTAATACAAACTAAAAGTATAGGCTCCCTGTTCCCCACTAGGTT  300

seq1  CCTGGTCAAGATGATCAGTGGAACAACCTAAAATTAGAGTTGGAATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCAAGATGATCAGTGGAACAACCTAAAATTAGAGTTGGAATTTCC  350

seq1  ACAAGCAAATCCCACATGACAAAAGTTCTCTGGTTCCATAAACTTAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAATCCCACATGACAAAAGTTCTCTGGTTCCATAAACTTAATGT  400

seq1  TTTTATTTCAAAGCTCTTCCTTTTTAATATGTTGTCAAAGGGGCAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCAAAGCTCTTCCTTTTTAATATGTTGTCAAAGGGGCAAAAGT  450

seq1  TCTCTAAGTGCACATTCACACACACACACACACACACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGTGCACATTCACACACACACACACACACACACACACACACACA  500

seq1  CACACACACACACAGAGTGAGGCCTTAGTTTTTCCACCTGGAAAACCGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACAGAGTGAGGCCTTAGTTTTTCCACCTGGAAAACCGGG  550

seq1  TTGTTAACCTCTATTTGAGGCTAGTCAGCCTCTGCCCTTTCCTGGAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAACCTCTATTTGAGGCTAGTCAGCCTCTGCCCTTTCCTGGAGAAT  600

seq1  AGGCTAATTTCTTTCCCCTGTGGACAGTGTGCTTAATCTCTGAGTGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATTTCTTTCCCCTGTGGACAGTGTGCTTAATCTCTGAGTGTGCC  650

seq1  CCTTTCGAGCAACTATGACAACATACTGTGTTCTCTGATTTTGGCAGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCGAGCAACTATGACAACATACTGTGTTCTCTGATTTTGGCAGGCA  700

seq1  GAGGAGCGATACGAATTAACATGTATTTATTACAGATAGGGCAGCCATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCGATACGAATTAACATGTATTTATTACAGATAGGGCAGCCATGA  750

seq1  TAAACCAAAGAATTTCATCCCACTCTCTAGTTTGGGGGACCAAGGTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCAAAGAATTTCATCCCACTCTCTAGTTTGGGGGACCAAGGTGATT  800

seq1  CCTGGGGTTATTTGCAGGGCATGGGTAACTCAAAGGCAGCTATATCACTA  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTGGGGTTATTTGCATGGCATGGGTAACTCAAAGGCAGCTATATCACTA  850

seq1  ACCCACACCTTCTCCCAATAATGGGTGCATCTCTGGAGCTCCTTGCCCGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACCTTCTCCCAATAATGGGTGCATCTCTGGAGCTCCTTGCCCGA  900

seq1  CTTGCTGGCAGTTCTCCCAAAGGTCTTCTCTTCCAGTACCACCCGCTCCA  950
      ||||||||||||||| |||||||||||||||| ||||  ||||||||| |
seq2  CTTGCTGGCAGTTCT-CCAAAGGTCTTCTCTTACAGTTACACCCGCTCGA  949

seq1  GCAACTGCTCACCTAACCCTCCGGAGCTCTG-TGAGTCTCCTTAGGTCCA  999
      ||||||||||| || | ||| | || ||||| ||||||||||||||| ||
seq2  GCAACTGCTCATCTGATCCTGCAGAACTCTGATGAGTCTCCTTAGGTACA  999

seq1  AGCTT-CCAGAGCT-ATGGTAGTTT--GAATGAAGAAA-GAAAGAAAGAA  1044
      ||||| ||| |||| ||||||||||   | |||||||| ||  ||| | |
seq2  AGCTTACCAAAGCTGATGGTAGTTTTGTACTGAAGAAATGACGGAATGGA  1049

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAG  1094
      || |||||                                          
seq2  AGGAAGAA------------------------------------------  1057

seq1  GAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAA  1132
                                            
seq2  --------------------------------------  1057