BAC Information

Click to search

BAC

Clone NameB6Ng01-265C15
Chromosome9 (Build37)
Map Location 68,909,968 - 68,911,062
singlet/doubletsinglet
Overlap geneRora
Upstream geneLOC100041451, 9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265C15.bB6Ng01-265C15.g
ACCGA068886GA068887
length1,2251,103
definitionB6Ng01-265C15.b B6Ng01-265C15.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacataaaaccagagacactgaaacttatagaagagaaagtgga
aaagagccttgaatataggcacaggggaaaaattcctgaacacaaaacca
atggcttttactgtaagatcaagaattaacaaatggaacctcataaaatt
gcaaagcttctgtaaggcaaagaacactgtcaataagacaaaaaggcaac
caactgattgggaaaagatctttaccgatttaaaatccaatagagggcta
atatccaatatatacaaataactcaagaagttagactccagaaaaccaaa
taaaaacctattaaaaatgggtacagagttaaataaagaattctcaactg
aggaatactgaatgactaagaagcacctaagaaaatgtttaacatcctta
gtcaccagggaaatgcaaatcaaaacaaatctgagatcttacctcacacc
agtcagaatggctaagatcaaaaactcaggtgacagcagaggctggcgtg
gatgtggaggaagaggaacactcctccattgctggtgggattacaagctg
gtacaaccactctggaaatcagtttggtggttccttagaaaactggacat
agaactaccagaggatccagcaataccactcctgggcatatacccagaag
atgctccaacttgtaataaggacacatgctctactatgttcatagcagct
ttatatataatagccagaaactggaaagaattggctgcgcggtggtggca
catgcctttaattccagcacttgggaggcagaggcagggggatttctgag
tttgaggccagcctggtctacagagtgagttccaggacagccagggctat
acggagaaacgcggtctcaaaaaaaaaaccccaaccaaccaaacaaacaa
acaagcaaatacaacaaagaaagaatccagatgcccttcaacagaggaat
ggatacagaaaatgtgttacatttacacatggagtactactcagctgtta
aaaacaatgaatttatgaaattcttcgacaatggatgtgtctgagatatc
attctgagtaacccattcacaaaagaactcacatgatatgcacctccact
gataagtggatataagcccagaagcttgaataccaagaatacatcgcaag
acttgaaactctcagaggaggaagaccttagttggaatcttgtctctgga
ggaaacaaatatccatgggtacgaa
gaattcaagagactccattaactacagtagcttggaagttcaaaagctga
tgatataaaggtttatcagagacaagagggctgagcttcaagccagcagt
ggggcaagctgaggcaccatggaatacattgtcccaaaggttcagaggct
ttaccacctgttccctcagaagaatatgagtaaggggcctaaaatagctc
ttcttctttctttttttgagacagagtcttatgcagtagcaaaggctagc
cttgaactcaactatgtagctgaggatgactctgaattgttggtcctcca
gcctccaacctaagttctgtgattacagatatgtgcagccatatcaggtt
tacacagtgccggggttaaacttagggctgttcatcagacgctgttttca
gtgggagtttcctctcagatcaccattggaaaactgtcccatactctcct
aaactggaaaattatcctttggctggtatcaagttgtgcatctagacttt
agacctgtaaaaactgtgatgctcacttcatggtagttgtaaagaccctt
aaagggactgtgtattgtatgaatattgtccttttacaaagtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtacactccagagattcacactatagttagcc
tcattcttaatgagctacagtgttgattcaaaacaaccaagcatgaaagg
aatatgttcagatgtttgactggaggatcctcccttctctcttccttgga
tatttctctagtgtaatagtagccacatgtttatttctaaccaggagcag
agatctttttaataccagtccaagagaaataaaatactcaacaccctggt
cgtggaactccccaaaaatgggcttaatcattgtagggacccctcttttt
gtgtccagaaatcaccccatcttcttaatatcccccgtcctcaataggat
tcagtaactaggaaatggctggcatggaaatgtgaactacaagtgtattg
tgcttaaggcagcaatcaaggaaacaaactgaacaagaaaagagacagga
gggtccaggggacttttttgggtcattacacaactcaaggaagcaaagtg
acg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68909968_68911062
seq2: B6Ng01-265C15.g_64_1166

seq1  GAATTCAAGAGACTCCATTAACTACAGTAGCTTGGAAGTTCAAAAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGACTCCATTAACTACAGTAGCTTGGAAGTTCAAAAGCTGA  50

seq1  TGATATAAAGGTTTATCAGAGACAAGAGGGCTGAGCTTCAAGCCAGCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAAGGTTTATCAGAGACAAGAGGGCTGAGCTTCAAGCCAGCAGT  100

seq1  GGGGCAAGCTGAGGCACCATGGAATACATTGTCCCAAAGGTTCAGAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGCTGAGGCACCATGGAATACATTGTCCCAAAGGTTCAGAGGCT  150

seq1  TTACCACCTGTTCCCTCAGAAGAATATGAGTAAGGGGCCTAAAATAGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACCTGTTCCCTCAGAAGAATATGAGTAAGGGGCCTAAAATAGCTC  200

seq1  TTCTTCTTTCTTTTTTTGAGACAGAGTCTTATGCAGTAGCAAAGGCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTTTTTTTGAGACAGAGTCTTATGCAGTAGCAAAGGCTAGC  250

seq1  CTTGAACTCAACTATGTAGCTGAGGATGACTCTGAATTGTTGGTCCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCAACTATGTAGCTGAGGATGACTCTGAATTGTTGGTCCTCCA  300

seq1  GCCTCCAACCTAAGTTCTGTGATTACAGATATGTGCAGCCATATCAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAACCTAAGTTCTGTGATTACAGATATGTGCAGCCATATCAGGTT  350

seq1  TACACAGTGCCGGGGTTAAACTTAGGGCTGTTCATCAGACGCTGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTGCCGGGGTTAAACTTAGGGCTGTTCATCAGACGCTGTTTTCA  400

seq1  GTGGGAGTTTCCTCTCAGATCACCATTGGAAAACTGTCCCATACTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGTTTCCTCTCAGATCACCATTGGAAAACTGTCCCATACTCTCCT  450

seq1  AAACTGGAAAATTATCCTTTGGCTGGTATCAAGTTGTGCATCTAGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAAAATTATCCTTTGGCTGGTATCAAGTTGTGCATCTAGACTTT  500

seq1  AGACCTGTAAAAACTGTGATGCTCACTTCATGGTAGTTGTAAAGACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTAAAAACTGTGATGCTCACTTCATGGTAGTTGTAAAGACCCTT  550

seq1  AAAGGGACTGTGTATTGTATGAATATTGTCCTTTTACAAAGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGACTGTGTATTGTATGAATATTGTCCTTTTACAAAGTGTGTGTGT  600

seq1  GTGTGTGTGTGTGTGTGTGTACACTCCAGAGATTCACACTATAGTTAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTACACTCCAGAGATTCACACTATAGTTAGCC  650

seq1  TCATTCTTAATGAGCTACAGTGTTGATTCAAAACAACCAAGCATGAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTAATGAGCTACAGTGTTGATTCAAAACAACCAAGCATGAAAGG  700

seq1  AATATGTTCAGATGTTTGACTGGAGGATCCTCCCTTCTCTCTTCCTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTCAGATGTTTGACTGGAGGATCCTCCCTTCTCTCTTCCTTGGA  750

seq1  TATTTCTCTAGTGTAATAGTAGCCACATGTTTATTTCTAACCAGGAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCTAGTGTAATAGTAGCCACATGTTTATTTCTAACCAGGAGCAG  800

seq1  AGATC-TTTTAATACCAGTCCAAGAGAAATAAAATACTCAACACCCTGGT  849
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTTTAATACCAGTCCAAGAGAAATAAAATACTCAACACCCTGGT  850

seq1  CGTGGAACTCCCCAAAAAT-GGCTTAATCATTGTAGGGACCCCTC-TTTT  897
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  CGTGGAACTCCCCAAAAATGGGCTTAATCATTGTAGGGACCCCTCTTTTT  900

seq1  GTGTCCAGAAATCA-CCCATCTTCTTAATATCCCCC-TCCTCAATAGGAT  945
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  GTGTCCAGAAATCACCCCATCTTCTTAATATCCCCCGTCCTCAATAGGAT  950

seq1  TCAGTAACTAGG-AATGGCTGGCATGG-AATGTGAACTACAAAGTGTATT  993
      |||||||||||| |||||||||||||| |||||||||||| |||||||||
seq2  TCAGTAACTAGGAAATGGCTGGCATGGAAATGTGAACTAC-AAGTGTATT  999

seq1  GTGCTTAAGGCAGCAAATTAAAGGAAACAAACTG-ACAAG-AAAGAGACA  1041
      ||||||||||||||||  | |||||||||||||| ||||| |||||||||
seq2  GTGCTTAAGGCAGCAA--TCAAGGAAACAAACTGAACAAGAAAAGAGACA  1047

seq1  GGGAGGGGTCAGGGGACTTTTT--GGTCATTA-ACAAACACAGGAAGGCA  1088
       ||||||  |||||||||||||  |||||||| ||||    ||||||  |
seq2  -GGAGGGTCCAGGGGACTTTTTTGGGTCATTACACAACTCAAGGAAGCAA  1096

seq1  AGTGACG  1095
      |||||||
seq2  AGTGACG  1103