BAC Information

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BAC

Clone NameB6Ng01-265G19
Chromosome9 (Build37)
Map Location 11,290,271 - 11,405,079
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665154, LOC100039970, LOC665178
Downstream geneLOC100039989, LOC622505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265G19.bB6Ng01-265G19.g
ACCGA069082GA069083
length1,0971,098
definitionB6Ng01-265G19.b B6Ng01-265G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,290,271 - 11,291,242)(11,403,955 - 11,405,079)
sequence
gaattctaacagatatcaaaaagaagaggtaatatcaatactcctcaaat
aattacacagaacagaaactgaaaaaacactaccaaattcattctatgag
gccacagtttccctgatatttagacaatacaaagtatcaacaaagaaaga
gaacttcagactaatttcacttatgaagatcaacacaaaaatactcaata
aaaatcttgtgaattgaaactgagaacacactaaaaatatcattagccat
gatcaagtaggcttcatcacagagatgcagggatggttcaatatacaaat
attccatctacatgatccattatataaaaaataaactgacagaaaaaaat
tatttcactacacacacacacacacacacacacaacctttgacaaaaacc
aaaacattttcatattaaaagtcacatatgtacacatactaaaagcaaca
tgcagcaagacaataaacaaaatcaaactaaatggagaaaattttaaagc
aattctattaaaattagggaaaagacaaggctgcctccaccctccattta
ttcagtatagtttgtgacgttctagctagcataataagacaaaaaaaaaa
atcaaggaaatactaattggaaaggaagaagtcaaggataactatttgtt
ttttgtttgtttggggttttttcttcttttaaaatatttttattaggtat
tttcctcatttacatttccaatgctatcccaaaagtcccccatacccctc
cccaatcccctacccacccactcccactttttggccctggcgttcccctg
tactggggcatataaagtttgcatgaacaatgggactctctttccagtga
tggccaactaggccatcttttgatacatatgccgcgagagacaagagctc
cggggtactggttagttcatattgtggttttaaaaacctcagtcatctaa
ttattagtatatctttttcattttttataggtatttagctcattacattc
atgctatacaaagtccccataccccccttcactccctacccaccactccc
cttttgcctgctcctatactggacattaaggtttgcaagtcgaatgg

ggaagaaagccatgatgaagctatctggataaaccagagtgtagtaaatc
acaaattaaatgatgctggagttctgtggatatcagctgccatcaggggc
attttgttgaaagagatgttaaatgaacttctaagtttgaagtatttggg
acaaaattcactggccagactccaagattgcgggtaattgaatgaagatc
ttttacagaaagtaattaggactaatttgaacaggtgaggtcatatgaaa
aactttctggtggaaaatgaagctaattgagattaatgactcttaaatac
attgtttctctacttagcatttcaaagcaatacttcctagagaatataaa
atgtttccagcatttgattagggagacagtctcttcattcttatgttatt
attattatacaacactgatagatgtttccaaagcatatgcaatgtttatt
gaaatctttaaaaaaaaagttgtatctgtagttgtctggagtgtgcctgt
gtatatgtctgttgacatatgtgtagttatctgtgttagggaaggcttta
cccatgaaaaacagattatgacagctattcatagagaagggaaggaagga
tgggagaaggagaagaaagatggaaaagagaactagaaaggaaaaaggag
gaagaagaggaagagaagaagcaggagaaaggaaagaaagagcaggaagc
ttgccagagtcttcctacagaagtttaataagaaacccactcattatgtt
tctggttttagagttttagttgtttgtttttgttttattttgttttctgt
cataactactgataggaaatacaacttaaacctgtggaagattaaatttt
atgaacaaagcctgataagaagagtagcattcatgaacgtaataaaaagt
agattccaggtcatgacagcacaaatgtggttcagtgtagtattgagtga
ccagtagtcatgttcttttcttttctttttaatattctgtatgcctttct
atttttgtatcttgcattcatagttgttttattattgcctacatgactag
ttactgatctcagtctataaaaaaattgccattatagcagttatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11290271_11291242
seq2: B6Ng01-265G19.b_198_1144

seq1  GAACTTCAGACTAATTTCACTTATGAAGATCAACACAAAAATACTCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCAGACTAATTTCACTTATGAAGATCAACACAAAAATACTCAATA  50

seq1  AAAATCTTGTGAATTGAAACTGAGAACACACTAAAAATATCATTAGCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTGTGAATTGAAACTGAGAACACACTAAAAATATCATTAGCCAT  100

seq1  GATCAAGTAGGCTTCATCACAGAGATGCAGGGATGGTTCAATATACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGTAGGCTTCATCACAGAGATGCAGGGATGGTTCAATATACAAAT  150

seq1  ATTCCATCTACATGATCCATTATATAAAAAATAAACTGACAGAAAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTACATGATCCATTATATAAAAAATAAACTGACAGAAAAAAAT  200

seq1  TATTTCACTACACACACACACACACACACACACAACCTTTGACAAAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACTACACACACACACACACACACACACAACCTTTGACAAAAACC  250

seq1  AAAACATTTTCATATTAAAAGTCACATATGTACACATACTAAAAGCAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATTTTCATATTAAAAGTCACATATGTACACATACTAAAAGCAACA  300

seq1  TGCAGCAAGACAATAAACAAAATCAAACTAAATGGAGAAAATTTTAAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAGACAATAAACAAAATCAAACTAAATGGAGAAAATTTTAAAGC  350

seq1  AATTCTATTAAAATTAGGGAAAAGACAAGGCTGCCTCCACCCTCCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTAAAATTAGGGAAAAGACAAGGCTGCCTCCACCCTCCATTTA  400

seq1  TTCAGTATAGTTTGTGACGTTCTAGCTAGCATAATAAGACAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATAGTTTGTGACGTTCTAGCTAGCATAATAAGACAAAAAAAAAA  450

seq1  ATCAAGGAAATACTAATTGGAAAGGAAGAAGTCAAGGATAACTATTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGAAATACTAATTGGAAAGGAAGAAGTCAAGGATAACTATTTGTT  500

seq1  TTTTGTTTGTTTGGGGTTTTTTCTTCTTTTAAAATATTTTTATTAGGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGGGGTTTTTTCTTCTTTTAAAATATTTTTATTAGGTAT  550

seq1  TTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCCTC  600

seq1  CCCAATCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTG  650

seq1  TACTGGGGCATATAAAGTTTGCATGAACAATGGGACTCTCTTTCCAGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGGCATATAAAGTTTGCATGAACAATGGGACTCTCTTTCCAGTGA  700

seq1  TGGCCAACTAGGCCATCTTTTGATACATATGCCGCGAGAGACAAGAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACTAGGCCATCTTTTGATACATATGCCGCGAGAGACAAGAGCTC  750

seq1  CGGGGTACTGGTTAGTTCATATTGTGGTTTTAAAAACCTCAGTTCATCTA  800
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CGGGGTACTGGTTAGTTCATATTGTGGTTTTAAAAACCTCAG-TCATCTA  799

seq1  ATTATTAGTTAATATCTTTTTCCATTTTTTATTAGGTATTTAGCTCATTT  850
      |||||||||  |||||||||| ||||||||| ||||||||||||||| ||
seq2  ATTATTAGT--ATATCTTTTT-CATTTTTTA-TAGGTATTTAGCTCA-TT  844

seq1  ACATTTCCAATGCTATACCAAAAGTCCCCCATACCCCCCCTCACTCCCCT  900
      |||||    |||||||||  ||||| ||||||||||||| ||||| ||||
seq2  ACATT---CATGCTATAC--AAAGT-CCCCATACCCCCCTTCACT-CCCT  887

seq1  ACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTATACTGGGGCAT  950
      ||||| |||||||||  |||||  ||||     | |||||||| || |||
seq2  ACCCA-CCACTCCCC--TTTTG--CCTG-----CTCCTATACT-GGACAT  926

seq1  ATAAAGTTTGCAAGTCGAATGG  972
       ||| |||||||||||||||||
seq2  -TAAGGTTTGCAAGTCGAATGG  947


seq1: chr9_11403955_11405079
seq2: B6Ng01-265G19.g_77_1174 (reverse)

seq1  ATGTATTAACTGCTTAATAAATGCCAATTTTTTATAGAACTGAAGAATCC  50
      ||||| ||||||||  ||||  || | |||||||||| |||| |||   |
seq2  ATGTA-TAACTGCT--ATAATGGCAATTTTTTTATAG-ACTG-AGA--TC  43

seq1  AGTAAAACTAGTCAATGTAAGACAAATAAATAAAAACAACTAATGAAATT  100
      |||  |||||||| ||||| |   |||||   ||||||||| |||||  |
seq2  AGT--AACTAGTC-ATGTAGG--CAATAA--TAAAACAACT-ATGAA--T  83

seq1  GCAAAGAATAAACAAAAAATAGAAAGGCAATACAGAATAATTAAAAAAGA  150
      ||||   |||    |||||||||||||| ||||||||||  | |||||||
seq2  GCAA--GATA---CAAAAATAGAAAGGC-ATACAGAATA--TTAAAAAGA  125

seq1  AAAGAAAAGAAAACATGACTACTGGTCAACTCAATACTACACTG-ACCAC  199
      |||||||||  |||||||||||||||| |||||||||||||||| |||||
seq2  AAAGAAAAG--AACATGACTACTGGTC-ACTCAATACTACACTGAACCAC  172

seq1  ATTTGTGCTGTCATGACCTGGAATCTACTTTTTATTACGTTCATGAATGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGCTGTCATGACCTGGAATCTACTTTTTATTACGTTCATGAATGC  222

seq1  TACTCTTCTTATCAGGCTTTGTTCATAAAATTTAATCTTCCACAGGTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCTTATCAGGCTTTGTTCATAAAATTTAATCTTCCACAGGTTTA  272

seq1  AGTTGTATTTCCTATCAGTAGTTATGACAGAAAACAAAATAAAACAAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATTTCCTATCAGTAGTTATGACAGAAAACAAAATAAAACAAAAA  322

seq1  CAAACAACTAAAACTCTAAAACCAGAAACATAATGAGTGGGTTTCTTATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACTAAAACTCTAAAACCAGAAACATAATGAGTGGGTTTCTTATT  372

seq1  AAACTTCTGTAGGAAGACTCTGGCAAGCTTCCTGCTCTTTCTTTCCTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGTAGGAAGACTCTGGCAAGCTTCCTGCTCTTTCTTTCCTTTC  422

seq1  TCCTGCTTCTTCTCTTCCTCTTCTTCCTCCTTTTTCCTTTCTAGTTCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTCTTCTCTTCCTCTTCTTCCTCCTTTTTCCTTTCTAGTTCTCT  472

seq1  TTTCCATCTTTCTTCTCCTTCTCCCATCCTTCCTTCCCTTCTCTATGAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTTTCTTCTCCTTCTCCCATCCTTCCTTCCCTTCTCTATGAAT  522

seq1  AGCTGTCATAATCTGTTTTTCATGGGTAAAGCCTTCCCTAACACAGATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCATAATCTGTTTTTCATGGGTAAAGCCTTCCCTAACACAGATAA  572

seq1  CTACACATATGTCAACAGACATATACACAGGCACACTCCAGACAACTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATATGTCAACAGACATATACACAGGCACACTCCAGACAACTACA  622

seq1  GATACAACTTTTTTTTTAAAGATTTCAATAAACATTGCATATGCTTTGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAACTTTTTTTTTAAAGATTTCAATAAACATTGCATATGCTTTGGA  672

seq1  AACATCTATCAGTGTTGTATAATAATAATAACATAAGAATGAAGAGACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCTATCAGTGTTGTATAATAATAATAACATAAGAATGAAGAGACTG  722

seq1  TCTCCCTAATCAAATGCTGGAAACATTTTATATTCTCTAGGAAGTATTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTAATCAAATGCTGGAAACATTTTATATTCTCTAGGAAGTATTGC  772

seq1  TTTGAAATGCTAAGTAGAGAAACAATGTATTTAAGAGTCATTAATCTCAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATGCTAAGTAGAGAAACAATGTATTTAAGAGTCATTAATCTCAA  822

seq1  TTAGCTTCATTTTCCACCAGAAAGTTTTTCATATGACCTCACCTGTTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCATTTTCCACCAGAAAGTTTTTCATATGACCTCACCTGTTCAA  872

seq1  ATTAGTCCTAATTACTTTCTGTAAAAGATCTTCATTCAATTACCCGCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCCTAATTACTTTCTGTAAAAGATCTTCATTCAATTACCCGCAAT  922

seq1  CTTGGAGTCTGGCCAGTGAATTTTGTCCCAAATACTTCAAACTTAGAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGTCTGGCCAGTGAATTTTGTCCCAAATACTTCAAACTTAGAAGT  972

seq1  TCATTTAACATCTCTTTCAACAAAATGCCCCTGATGGCAGCTGATATCCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAACATCTCTTTCAACAAAATGCCCCTGATGGCAGCTGATATCCA  1022

seq1  CAGAACTCCAGCATCATTTAATTTGTGATTTACTACACTCTGGTTTATCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCCAGCATCATTTAATTTGTGATTTACTACACTCTGGTTTATCC  1072

seq1  AGATAGCTTCATCATGGCTTTCTTCC  1125
      ||||||||||||||||||||||||||
seq2  AGATAGCTTCATCATGGCTTTCTTCC  1098


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