BAC Information

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BAC

Clone NameB6Ng01-265K21
Chromosome9 (Build37)
Map Location 36,600,248 - 36,737,002
singlet/doubletdoublet
Overlap geneEi24, LOC627681, Fez1, Pknox2
Upstream gene9230110F15Rik, LOC100041605, 9230113P08Rik, EG546123, LOC100041618, LOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a
Downstream geneLOC100042545, 1810021J13Rik, Slc37a2, LOC100042561, Ccdc15, Hepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265K21.bB6Ng01-265K21.g
ACCGA069266GA069267
length9971,130
definitionB6Ng01-265K21.b B6Ng01-265K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,736,028 - 36,737,002)(36,600,248 - 36,601,376)
sequence
gaattctgggtatatagtatatattatagataatatatatataatatata
tttgctttttaatttgtttaacttaactgtactttcccattttgtgtaat
aaatacatattggtcatatacttaaatgaatagggggacatgtttgagag
taggtgtaatgtatgtatatatttatacattcataagactattttaaaat
gttgacttttaaaagcagaatatgtccggagacacagctcagtgatagat
catttgtctaccatgtgagagacccttgttctataccctgcactccctcc
tccaaaaattaaatgggataggatagtattgctatgagagaaaaaaagaa
aagaaaaaacaggagagaaaaaaaataaaggatgggaagggagagggaag
aaagaaaagaaagataataatagaatcagttttgtttcgataaaagcaat
tgagcaattgattcaagtcagatgacctgtccagtgcacagataaaatta
aaagaagaaagttatgttgatggaggtactagatgtccttggtgctacag
aaggctgagcaagccctttacagaaggcgagagagatctgagtcctctgt
aaggaagaacttcttaatcagcacattaaaagaacataagagacagttca
agacaatgaggtcgtcttcccgtggcaggctcggcctggaagatagctgc
tgccataggtcccagtgtgttctgcaatagtccccctcacctttgccggc
ctccacttacccccaaaccacacaccctttatgctaccattgactcctga
gattaccatagaaaggacagagcaatttggtcttcaggtataaggcccac
gggggctttcattactgcctaaccacttgtgtgaccttggggatggaaaa
aatgcctggggaaccctcatcttttttttttttcaacaataaaatgtggg
gaaattagaaggactttgttggccgaggaggttgtcctagaataaat
gaattccctgataagccaggcttgacaaataagccaacttcaggttcagt
gacagatactgcctcaaggcgagaaagcagacagaaacagaggtgataca
ggaagacacctaaagttctgctttggccttcccatgagaataggactgca
tctgcataaccacaagcacataccacgcaaatacacacagagggacacca
gacacaggctcacaattgaaattccaatatttgggaaagagaaacaggac
tgaaaggaactcaaaccagccaaggctgcgtaacaaaataaaaaagatgc
atgatagtatacattcctagtatttggcacacagaggcaggaaggagcat
caccaggagctcaaaatcagactgagatacatagcaagactgtctcaaaa
ataccaaaaattcctacttgctgagtgatgtagactaaactaaaaattga
cattctatgtaaaagacccaacaaatatataaaattacaaaagaaagatg
tcctagtctgtttctttaacaaaaaagcaaaaaagaaaaggttaagggac
aaattccttgaaacaaaatatactcaccctgccaaggtcctgcagaaagg
ttttgacactgtcagccatctctccactgcccagactatcaaatacagcg
agagggaagtgcccccaaaccattcatcatggagggcctagacagagatg
gaggaaaaagactaatgttaaagatccattacttcatgatgtttctacaa
aatgacacaacattctagtatccctaatacaagagtaatagactctgaca
ctaataacgtcaactaagaggctagacctttaactgctaaaattaagagt
ctgttttcttcagagatgagatactggaagttgttctggctagtcccaca
cttgctgaaactacaggaatgtttagataagggcaaaatgtgctcctgga
caagtggtctccccctgagccttgattttccaaaccactcctcccaaaca
ctttcacttttgagatctgggataggaaatactctcttaggcatttttta
tactggctaacatagtctcagcacttgatgttgagactgcaaaggatgct
tcagtggttaagagaactggctactctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_36736028_36737002
seq2: B6Ng01-265K21.b_47_1043 (reverse)

seq1  ATTTATTCTA-GACAACCTCCTCTGCAGAC-AAGTCC-TCTTATTT-CCC  46
      |||||||||| |||||||||||| ||  || |||||| ||| |||| |||
seq2  ATTTATTCTAGGACAACCTCCTCGGCCAACAAAGTCCTTCTAATTTCCCC  50

seq1  ACATTTTATAGTTG--AAAAAAAAAAGATGAGG--TTCCCAGGCATTTTT  92
      ||||||||| ||||  |||||||||||||||||  | |||||||||||||
seq2  ACATTTTATTGTTGAAAAAAAAAAAAGATGAGGGTTCCCCAGGCATTTTT  100

seq1  T-CAT-CCCAAGGTCACACAGCTGG-TAGGCAGT-ATGAA--GCCCCGT-  135
      | ||| ||||||||||||||  ||| |||||||| |||||   |||||| 
seq2  TCCATCCCCAAGGTCACACAAGTGGTTAGGCAGTAATGAAAGCCCCCGTG  150

seq1  GGCCTTATACCTG-AGACCAAATTGCTCTGTCC-TTCTATGGT-ATCTCA  182
      ||||||||||||| ||||||||||||||||||| ||||||||| ||||||
seq2  GGCCTTATACCTGAAGACCAAATTGCTCTGTCCTTTCTATGGTAATCTCA  200

seq1  GGAGTCAATGGTAGCATAAAGGGTGTGTGGTTTGGGGGTAAGTGGAGGCC  232
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAATGGTAGCATAAAGGGTGTGTGGTTTGGGGGTAAGTGGAGGCC  250

seq1  GGC-AAGGTGA-GGGGACTA-TGCAG-ACACACTGGGACCTATGGCAGCA  278
      ||| ||||||| |||||||| ||||| |||||||||||||||||||||||
seq2  GGCAAAGGTGAGGGGGACTATTGCAGAACACACTGGGACCTATGGCAGCA  300

seq1  GCTATCTTCCAGGCCGAGCCTGCCACGGGAAGACGACCTCATTGTCTTGA  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTTCCAGGCCGAGCCTGCCACGGGAAGACGACCTCATTGTCTTGA  350

seq1  ACTGTCTCTTATGTTCTTTTAATGTGCTGATTAAGAAGTTCTTCCTTACA  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCTTATGTTCTTTTAATGTGCTGATTAAGAAGTTCTTCCTTACA  400

seq1  GAGGACTCAGATCTCTCTCGCCTTCTGTAAAGGGCTTGCTCAGCCTTCTG  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCAGATCTCTCTCGCCTTCTGTAAAGGGCTTGCTCAGCCTTCTG  450

seq1  TAGCACCAAGGACATCTAGTACCTCCATCAACATAACTTTCTTCTTTTAA  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCAAGGACATCTAGTACCTCCATCAACATAACTTTCTTCTTTTAA  500

seq1  TTTTATCTGTGCACTGGACAGGTCATCTGACTTGAATCAATTGCTCAATT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTGTGCACTGGACAGGTCATCTGACTTGAATCAATTGCTCAATT  550

seq1  GCTTTTATCGAAACAAAACTGATTCTATTATTATCTTTCTTTTCTTTCTT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTATCGAAACAAAACTGATTCTATTATTATCTTTCTTTTCTTTCTT  600

seq1  CCCTCTCCCTTCCCATCCTTTATTTTTTTTCTCTCCTGTTTTTTCTTTTC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCCTTCCCATCCTTTATTTTTTTTCTCTCCTGTTTTTTCTTTTC  650

seq1  TTTTTTTCTCTCATAGCAATACTATCCTATCCCATTTAATTTTTGGAGGA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTCTCATAGCAATACTATCCTATCCCATTTAATTTTTGGAGGA  700

seq1  GGGAGTGCAGGGTATAGAACAAGGGTCTCTCACATGGTAGACAAATGATC  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGCAGGGTATAGAACAAGGGTCTCTCACATGGTAGACAAATGATC  750

seq1  TATCACTGAGCTGTGTCTCCGGACATATTCTGCTTTTAAAAGTCAACATT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGAGCTGTGTCTCCGGACATATTCTGCTTTTAAAAGTCAACATT  800

seq1  TTAAAATAGTCTTATGAATGTATAAATATATACATACATTACACCTACTC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAGTCTTATGAATGTATAAATATATACATACATTACACCTACTC  850

seq1  TCAAACATGTCCCCCTATTCATTTAAGTATATGACCAATATGTATTTATT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACATGTCCCCCTATTCATTTAAGTATATGACCAATATGTATTTATT  900

seq1  ACACAAAATGGGAAAGTACAGTTAAGTTAAACAAATTAAAAAGCAAATAT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAATGGGAAAGTACAGTTAAGTTAAACAAATTAAAAAGCAAATAT  950

seq1  ATATTATATATATATTATCTATAATATATACTATATACCCAGAATTC  975
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATATATATTATCTATAATATATACTATATACCCAGAATTC  997

seq1: chr9_36600248_36601376
seq2: B6Ng01-265K21.g_67_1196

seq1  GAATTCCCTGATAAGCCAGGCTTGACAAATAAGCCAACTTCAGGTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGATAAGCCAGGCTTGACAAATAAGCCAACTTCAGGTTCAGT  50

seq1  GACAGATACTGCCTCAAGGCGAGAAAGCAGACAGAAACAGAGGTGATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATACTGCCTCAAGGCGAGAAAGCAGACAGAAACAGAGGTGATACA  100

seq1  GGAAGACACCTAAAGTTCTGCTTTGGCCTTCCCATGAGAATAGGACTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACCTAAAGTTCTGCTTTGGCCTTCCCATGAGAATAGGACTGCA  150

seq1  TCTGCATAACCACAAGCACATACCACGCAAATACACACAGAGGGACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATAACCACAAGCACATACCACGCAAATACACACAGAGGGACACCA  200

seq1  GACACAGGCTCACAATTGAAATTCCAATATTTGGGAAAGAGAAACAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGCTCACAATTGAAATTCCAATATTTGGGAAAGAGAAACAGGAC  250

seq1  TGAAAGGAACTCAAACCAGCCAAGGCTGCGTAACAAAATAAAAAAGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAACTCAAACCAGCCAAGGCTGCGTAACAAAATAAAAAAGATGC  300

seq1  ATGATAGTATACATTCCTAGTATTTGGCACACAGAGGCAGGAAGGAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTATACATTCCTAGTATTTGGCACACAGAGGCAGGAAGGAGCAT  350

seq1  CACCAGGAGCTCAAAATCAGACTGAGATACATAGCAAGACTGTCTCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGAGCTCAAAATCAGACTGAGATACATAGCAAGACTGTCTCAAAA  400

seq1  ATACCAAAAATTCCTACTTGCTGAGTGATGTAGACTAAACTAAAAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAAATTCCTACTTGCTGAGTGATGTAGACTAAACTAAAAATTGA  450

seq1  CATTCTATGTAAAAGACCCAACAAATATATAAAATTACAAAAGAAAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATGTAAAAGACCCAACAAATATATAAAATTACAAAAGAAAGATG  500

seq1  TCCTAGTCTGTTTCTTTAACAAAAAAGCAAAAAAGAAAAGGTTAAGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGTCTGTTTCTTTAACAAAAAAGCAAAAAAGAAAAGGTTAAGGGAC  550

seq1  AAATTCCTTGAAACAAAATATACTCACCCTGCCAAGGTCCTGCAGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTTGAAACAAAATATACTCACCCTGCCAAGGTCCTGCAGAAAGG  600

seq1  TTTTGACACTGTCAGCCATCTCTCCACTGCCCAGACTATCAAATACAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACACTGTCAGCCATCTCTCCACTGCCCAGACTATCAAATACAGCG  650

seq1  AGAGGGAAGTGCCCCCAAACCATTCATCATGGAGGGCCTAGACAGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGTGCCCCCAAACCATTCATCATGGAGGGCCTAGACAGAGATG  700

seq1  GAGGAAAAAGACTAATGTTAAAGATCCATTACTTCATGATGTTTCTACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAGACTAATGTTAAAGATCCATTACTTCATGATGTTTCTACAA  750

seq1  AATGACACAACATTCTAGTATCCCTAATACAAGAGTAATAGACTCTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACACAACATTCTAGTATCCCTAATACAAGAGTAATAGACTCTGACA  800

seq1  CTAATAACGTCAACTAAGAGGCTAGACCTTTAACTGCTAAAATTAAGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACGTCAACTAAGAGGCTAGACCTTTAACTGCTAAAATTAAGAGT  850

seq1  CTGTTTTCTTCAGAGATGAGATACTGGAAGTTGTTCTGGCTAGTCCCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTTCAGAGATGAGATACTGGAAGTTGTTCTGGCTAGTCCCACA  900

seq1  CTTGCTGAAACTACAGGAATGTTTAGATAAGGGGCAAAATGTGCTCCTGG  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTTGCTGAAACTACAGGAATGTTTAGATAA-GGGCAAAATGTGCTCCTGG  949

seq1  ACAAGTGGTCT-CCCCTGAGCCTTGAATTTCCAAACCACTCCTCCCAAAC  999
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  ACAAGTGGTCTCCCCCTGAGCCTTGATTTTCCAAACCACTCCTCCCAAAC  999

seq1  ACTTTCACTTTTGAGAATCT-GGATA-GAAATACTCTCTTAAGCAATTTT  1047
      ||||||||||||||| |||| ||||| |||||||||||||| ||| ||||
seq2  ACTTTCACTTTTGAG-ATCTGGGATAGGAAATACTCTCTTAGGCATTTTT  1048

seq1  TATACTGGCT-ACATAGTCTCCAGCACTTGAATGTGAGACTGGAAAAGAT  1096
      |||||||||| ||||||||| ||||||||||   |||||||| ||| |||
seq2  TATACTGGCTAACATAGTCT-CAGCACTTGATGTTGAGACTGCAAAGGAT  1097

seq1  GGCTCAGTGGTTAAGAGAACTGGCTACTCTTTC  1129
      |  ||||||||||||||||||||||||||||||
seq2  GCTTCAGTGGTTAAGAGAACTGGCTACTCTTTC  1130