BAC Information

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BAC

Clone NameB6Ng01-265M23
Chromosome9 (Build37)
Map Location 16,015,747 - 16,166,561
singlet/doubletdoublet
Overlap geneFat3
Upstream gene2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b
Downstream geneEG434373, LOC100040074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265M23.bB6Ng01-265M23.g
ACCGA069364GA069365
length1,245250
definitionB6Ng01-265M23.b B6Ng01-265M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,015,747 - 16,016,977)(16,166,312 - 16,166,561)
sequence
gaattccatcccccaacaaaaaagggccaaaataacaatagtacccaaca
aggatctggaaatggctgggcactgggattgctggtgaatgcatacagag
acacaaatgaagtcagtctcacgcacagtgggattctgtgagatgggctt
caattccagccacactaacgaattttttttttttgaaaagtaaaatttct
ctctaagtcttggctcaccacatttggaaaccaaaataaaatgaggcaag
agttgtgcaaagtaaaaacattacatcaaaaggcagcaggcttcccctgt
ggactgaagactctggtggcctgatgtcagtgacctgcaccgtcccctgg
caaccacagacaggtgcagatcagctgcttctgaaggagcaggtgctggg
ggagatgcaagcccaggggccaggccctgaagagcaggagtaggtctgga
acagagatgagaggcttggtgctgagagatattgcacagaaacacgaagg
taggttttacatattatgacacttgagcatctcagcttcctcccctctga
aatgtgagagctatggtcttctaccgcccattgtgaagactaagaaagat
gtgtggagatagctgggcaaagcttagaggtgataatgttacaaaacatt
tctttaagctacccacagaagctagaaaggtattctgtcctggtgttcct
atgcaccacaggccatttgttgatatgaataccctctaaaaggctccttg
acccacattaaattaggctcaggggtgcatgaaggtgaggaatagcctac
tggaagatttccaaggtttgctctctgtcttacagtctcccagccaggta
tatagcagccatttggaaaagctcctgaaaaaatgcttcgctgggtaatc
aaaatataaaaacagcatacaaacaattttgtccctgtatattaattacc
ttttgggactgaaataaaaacaaaacaaattacccctgctgagcagtgtg
ataaccagagacggcaccagatgagctaagcctgctccatgccagagaca
aatagggacttgctctggtgccagaaaataaatagaatggtttcatcttc
ccactagaaaaacagccctcaacatacaaatgcaaggccttgaagttact
cagccagcttagtgcatgcagcatgcatgcatgccatgctgaccgcggac
aatatgccatgtcacaatccacatacaaggcccttctcagagaga

cttgtagagggctacctgttgggggtcagagaagagaagtttctgtggcc
ttttattcaaaccgctgcagttttcccagctgtgaggagtttctcacccc
ttttacatttaaactcctggttatttccattgtcagtctggttccaggta
gacaaagccacctggaaagcaccctgagcgctaatgagcaggcatggcat
tggctcttcttccggtaatcatctggggggagcggggtgaggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_16015747_16016977
seq2: B6Ng01-265M23.b_46_1290

seq1  GAATTCCATCCCCCAACAAAAAAGGGCCAAAATAACAATAGTACCCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCCCAACAAAAAAGGGCCAAAATAACAATAGTACCCAACA  50

seq1  AGGATCTGGAAATGGCTGGGCACTGGGATTGCTGGTGAATGCATACAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGGAAATGGCTGGGCACTGGGATTGCTGGTGAATGCATACAGAG  100

seq1  ACACAAATGAAGTCAGTCTCACGCACAGTGGGATTCTGTGAGATGGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGAAGTCAGTCTCACGCACAGTGGGATTCTGTGAGATGGGCTT  150

seq1  CAATTCCAGCCACACTAACGAATTTTTTTTTTTTGAAAAGTAAAATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAGCCACACTAACGAATTTTTTTTTTTTGAAAAGTAAAATTTCT  200

seq1  CTCTAAGTCTTGGCTCACCACATTTGGAAACCAAAATAAAATGAGGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTCTTGGCTCACCACATTTGGAAACCAAAATAAAATGAGGCAAG  250

seq1  AGTTGTGCAAAGTAAAAACATTACATCAAAAGGCAGCAGGCTTCCCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGCAAAGTAAAAACATTACATCAAAAGGCAGCAGGCTTCCCCTGT  300

seq1  GGACTGAAGACTCTGGTGGCCTGATGTCAGTGACCTGCACCGTCCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGAAGACTCTGGTGGCCTGATGTCAGTGACCTGCACCGTCCCCTGG  350

seq1  CAACCACAGACAGGTGCAGATCAGCTGCTTCTGAAGGAGCAGGTGCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACAGACAGGTGCAGATCAGCTGCTTCTGAAGGAGCAGGTGCTGGG  400

seq1  GGAGATGCAAGCCCAGGGGCCAGGCCCTGAAGAGCAGGAGTAGGTCTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGCAAGCCCAGGGGCCAGGCCCTGAAGAGCAGGAGTAGGTCTGGA  450

seq1  ACAGAGATGAGAGGCTTGGTGCTGAGAGATATTGCACAGAAACACGAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGAGAGGCTTGGTGCTGAGAGATATTGCACAGAAACACGAAGG  500

seq1  TAGGTTTTACATATTATGACACTTGAGCATCTCAGCTTCCTCCCCTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTACATATTATGACACTTGAGCATCTCAGCTTCCTCCCCTCTGA  550

seq1  AATGTGAGAGCTATGGTCTTCTACCGCCCATTGTGAAGACTAAGAAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAGAGCTATGGTCTTCTACCGCCCATTGTGAAGACTAAGAAAGAT  600

seq1  GTGTGGAGATAGCTGGGCAAAGCTTAGAGGTGATAATGTTACAAAACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAGATAGCTGGGCAAAGCTTAGAGGTGATAATGTTACAAAACATT  650

seq1  TCTTTAAGCTACCCACAGAAGCTAGAAAGGTATTCTGTCCTGGTGTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAGCTACCCACAGAAGCTAGAAAGGTATTCTGTCCTGGTGTTCCT  700

seq1  ATGCACCACAGGCCATTTGTTGATATGAATACCCTCTAAAAGGCTCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACCACAGGCCATTTGTTGATATGAATACCCTCTAAAAGGCTCCTTG  750

seq1  ACCCACATTAAATTAGGCTCAGGGGTGCATGAAGGTGAGGAATAGCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATTAAATTAGGCTCAGGGGTGCATGAAGGTGAGGAATAGCCTAC  800

seq1  TGGAAGATTTCCAAGGTTTGCTCTCTGTCTTACAGTCTCCCAGCCAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGATTTCCAAGGTTTGCTCTCTGTCTTACAGTCTCCCAGCCAGGTA  850

seq1  TATAGCAGCCATTTGGAAAAGCTCCTGAAAAAATGCTTCGCTGGGTAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGCCATTTGGAAAAGCTCCTGAAAAAATGCTTCGCTGGGTAATC  900

seq1  AAAATATAAAAACAGCATACAAACAATTTTGTCCCTGTATTATTAATTAC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAATATAAAAACAGCATACAAACAATTTTGTCCCTGTA-TATTAATTAC  949

seq1  CTTTTGGGACTGAAAT-AAAACAAAACAAATTACCCCTGCTGAGCAGTGT  999
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTTTGGGACTGAAATAAAAACAAAACAAATTACCCCTGCTGAGCAGTGT  999

seq1  GATAACCAGAGACGGCACCAGATGAGCTAAGCCTGCTCCATGCCAGAGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCAGAGACGGCACCAGATGAGCTAAGCCTGCTCCATGCCAGAGAC  1049

seq1  AAATA-GGACTTGCTCT-GTGCCAGAGATAAATTAGAATGG-TTCATC-T  1095
      ||||| ||||||||||| |||||||| |  || |||||||| |||||| |
seq2  AAATAGGGACTTGCTCTGGTGCCAGAAAATAAATAGAATGGTTTCATCTT  1099

seq1  CCCACTAG--AAACAGCCCTCAACATACAAATGC-AGGCTTTGA--GTAC  1140
      ||||||||  |||||||||||||||||||||||| |||| ||||   |||
seq2  CCCACTAGAAAAACAGCCCTCAACATACAAATGCAAGGCCTTGAAGTTAC  1149

seq1  TCAG-CAGCTTAAGTGCATGCAAGCATGCATGCATGCCATGCCTGCACGC  1189
      |||| |||||| ||||||||| ||||||||||||||||||| |||  |||
seq2  TCAGCCAGCTT-AGTGCATGC-AGCATGCATGCATGCCATG-CTGACCGC  1196

seq1  GGAC-ATATTGCATGTCAC-ATCCACAT-CAGGGC----TTCAGAGAGA  1231
      |||| ||||  |||||||| |||||||| || |||     |||||||||
seq2  GGACAATATGCCATGTCACAATCCACATACAAGGCCCTTCTCAGAGAGA  1245


seq1: chr9_16166312_16166561
seq2: B6Ng01-265M23.g_75_324 (reverse)

seq1  CCCCCACCCCTCACCCCGCTCCCCCCAGATGATTACCGGAAGAAGAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCACCCCTCACCCCGCTCCCCCCAGATGATTACCGGAAGAAGAGCCA  50

seq1  ATGCCATGCCTGCTCATTAGCGCTCAGGGTGCTTTCCAGGTGGCTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATGCCTGCTCATTAGCGCTCAGGGTGCTTTCCAGGTGGCTTTGTC  100

seq1  TACCTGGAACCAGACTGACAATGGAAATAACCAGGAGTTTAAATGTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGAACCAGACTGACAATGGAAATAACCAGGAGTTTAAATGTAAAA  150

seq1  GGGGTGAGAAACTCCTCACAGCTGGGAAAACTGCAGCGGTTTGAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGAAACTCCTCACAGCTGGGAAAACTGCAGCGGTTTGAATAAAA  200

seq1  GGCCACAGAAACTTCTCTTCTCTGACCCCCAACAGGTAGCCCTCTACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGAAACTTCTCTTCTCTGACCCCCAACAGGTAGCCCTCTACAAG  250


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