BAC Information

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BAC

Clone NameB6Ng01-267C12
Chromosome9 (Build37)
Map Location 74,054,670 - 74,177,026
singlet/doubletdoublet
Overlap genenone
Upstream geneUnc13c, Wdr72
Downstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267C12.bB6Ng01-267C12.g
ACCGA070364GA070365
length1,191892
definitionB6Ng01-267C12.b B6Ng01-267C12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,054,670 - 74,055,867)(74,176,137 - 74,177,026)
sequence
gaattctgtagaaattttaaaaacacattaaagatgttaatatatccata
actttatagttgggattacatttttaaacactatatgcaatgcctgcaga
tctctggatgtgatattatgtttggtataaccttgccttaacagacacat
aacagttctgaggagtacacctctgaagtatttagacaaattgtgccata
gaccatttattgttcagcttatgaacataaaacatttttgtgctatgtat
tgtttttatatgactgtgtatatttgaaactgtctaatgggataaattag
tttaaaataatttcaatgttaaatggcatataacatttttaagactttaa
catataataccagctgctttccatgcagcagacactgtgtatattggttc
tatggcatatgaaagtactcattttctctatgaatacttattttaaaaaa
tactcctctcaccaacccaatttctgtccatttgtaagctagtatcctaa
aaattagccctactaaattctctaaaaataatacgtactttttaaatttc
tagatagaatacttctcttaattaacaagaatcttaaggaagtcctgaga
tgccaaaatcaaaatgggatacgattccagaagattacaaagaaagctga
aagggtggttgtgttcctggaaacttaggacaattttacccactccacag
gcgattagagagaagggaccaatccaggccaggatgagatgttgataacg
gcccatgtccatcatccctgagaaactgcacatgcaggaaaaatgtggac
caaagcaggaaaaatgtggaccaaagctgacgatgtgtttcacaaataaa
tgagaaaattcaattctgtgcctttgttggtctccaccttagatgaatgg
agggaaatagttttgacaagaattgtacactctgatgtaggagtcagaat
tcgtaatgcatgcagggatgaaaaactttaaatgttttatactgtcctgt
gggtgacaaccaagcgtgtgaccagtcacaagctaggagtattcttcctg
gaggaatgtgtctcacatgtgctcaggacccctcctgacagcatctcata
caacagtccacctgccagtcaaatcagcaaggatcaggaagttcaggtac
atagcaagccagtcacgtataaataaggcatgttcaggacg

gaattcttctcctggcccatttcccaaccactcttcccacaacaagggtt
gaaccaggtcaggatataaacccaaggcaggagaacacggcttcctcttg
ggggatcctttgctatctgtgtccactaagccctgtggctgtgaagctca
cactgaccagacagcagcagagaccatgtgttgaaaatgatcaaactcag
aggtttattggagtggaatgggtgggagaggcgttcaaagagcacttcct
gtcggttagtaaaagcacatcaataaaaagagatcaatggctgcttgttt
tctaggaatctgcttcggattcagcaaaagtctccctagttatgctgcat
ttctgatagaatagactagaaagaatatggctcgtgttagcataaaatat
cctgactatacgtgtaccttcaggatgttgtggctttccccatgggccag
aatacagtgggggaaaagtaagagatgactcaagccatgtttaaataaca
aataagagagacatggtgtggagaagtatgggactaaataattgattagt
tagaaagtttaattaagatgcatattttttaaggatcttttagtaagctc
tgtaaaataaaaaattccgtggctttttttgaggcaaagggaactgtaaa
tagcgtgcactagtttacacaacgtgaaatgtccataacagaatgaagat
tgtgttcttctttagctctgtggacccttgactgtcatgtggaaatttgc
tccaaacactcaagcttccatcttgggggtgggaggttagctgtttaagg
cacagaatgttcccctgtagggaaggtcattgagttcagaaggtgaaaaa
ctcactaggttcaagaggttcctaaactgtttggatgatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_74054670_74055867
seq2: B6Ng01-267C12.b_44_1234

seq1  GAATTCTGTAGAAATTTTAAAAACACATTAAAGATGTTAATATATCCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGAAATTTTAAAAACACATTAAAGATGTTAATATATCCATA  50

seq1  ACTTTATAGTTGGGATTACATTTTTAAACACTATATGCAATGCCTGCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATAGTTGGGATTACATTTTTAAACACTATATGCAATGCCTGCAGA  100

seq1  TCTCTGGATGTGATATTATGTTTGGTATAACCTTGCCTTAACAGACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGATGTGATATTATGTTTGGTATAACCTTGCCTTAACAGACACAT  150

seq1  AACAGTTCTGAGGAGTACACCTCTGAAGTATTTAGACAAATTGTGCCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCTGAGGAGTACACCTCTGAAGTATTTAGACAAATTGTGCCATA  200

seq1  GACCATTTATTGTTCAGCTTATGAACATAAAACATTTTTGTGCTATGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTATTGTTCAGCTTATGAACATAAAACATTTTTGTGCTATGTAT  250

seq1  TGTTTTTATATGACTGTGTATATTTGAAACTGTCTAATGGGATAAATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTATATGACTGTGTATATTTGAAACTGTCTAATGGGATAAATTAG  300

seq1  TTTAAAATAATTTCAATGTTAAATGGCATATAACATTTTTAAGACTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATAATTTCAATGTTAAATGGCATATAACATTTTTAAGACTTTAA  350

seq1  CATATAATACCAGCTGCTTTCCATGCAGCAGACACTGTGTATATTGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATACCAGCTGCTTTCCATGCAGCAGACACTGTGTATATTGGTTC  400

seq1  TATGGCATATGAAAGTACTCATTTTCTCTATGAATACTTATTTTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCATATGAAAGTACTCATTTTCTCTATGAATACTTATTTTAAAAAA  450

seq1  TACTCCTCTCACCAACCCAATTTCTGTCCATTTGTAAGCTAGTATCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCTCACCAACCCAATTTCTGTCCATTTGTAAGCTAGTATCCTAA  500

seq1  AAATTAGCCCTACTAAATTCTCTAAAAATAATACGTACTTTTTAAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGCCCTACTAAATTCTCTAAAAATAATACGTACTTTTTAAATTTC  550

seq1  TAGATAGAATACTTCTCTTAATTAACAAGAATCTTAAGGAAGTCCTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGAATACTTCTCTTAATTAACAAGAATCTTAAGGAAGTCCTGAGA  600

seq1  TGCCAAAATCAAAATGGGATACGATTCCAGAAGATTACAAAGAAAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAATCAAAATGGGATACGATTCCAGAAGATTACAAAGAAAGCTGA  650

seq1  AAGGGTGGTTGTGTTCCTGGAAACTTAGGACAATTTTACCCACTCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTGGTTGTGTTCCTGGAAACTTAGGACAATTTTACCCACTCCACAG  700

seq1  GCGATTAGAGAGAAGGGACCAATCCAGGCCAGGATGAGATGTTGATAACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTAGAGAGAAGGGACCAATCCAGGCCAGGATGAGATGTTGATAACG  750

seq1  GCCCATGTCCATCATCCCTGAGAAACTGCACATGCAGGAAAAATGTGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATGTCCATCATCCCTGAGAAACTGCACATGCAGGAAAAATGTGGAC  800

seq1  CAAAGCAGGAAAAATGTGGACCAAAGCTGACGATGTGTTTCACAAATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGGAAAAATGTGGACCAAAGCTGACGATGTGTTTCACAAATAAA  850

seq1  TGAGAAAATTCAATTCTGTGCCTTTGTTGGTCTCCACCTTAGATGAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATTCAATTCTGTGCCTTTGTTGGTCTCCACCTTAGATGAATGG  900

seq1  AGGGAAATAGTTTTGACAAAGAATTGTACACTCTGATGTAGGAGTCAGAA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGGGAAATAGTTTTGAC-AAGAATTGTACACTCTGATGTAGGAGTCAGAA  949

seq1  TTCGTAATGCATGCAGGGGATGAAAAAC-TTAAATGTTTTATACTGTCCT  999
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TTCGTAATGCATGCA-GGGATGAAAAACTTTAAATGTTTTATACTGTCCT  998

seq1  GTGGGTGACAACCAAGCGTGTGACCAGTCACAAGCTA-GAGTATTC-TCC  1047
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GTGGGTGACAACCAAGCGTGTGACCAGTCACAAGCTAGGAGTATTCTTCC  1048

seq1  T-GAGGAATGTGTCCTCACCTTGTGCCTCCAGGACCCCTCCTGACAGCAT  1096
      | ||||||||||| |||| | |||||   |||||||||||||||||||||
seq2  TGGAGGAATGTGT-CTCA-CATGTGC--TCAGGACCCCTCCTGACAGCAT  1094

seq1  CTCATACAAACAGT-CACCTG-CAGTCAAATTCAAGCAAAGAACCAGGAG  1144
      ||||||| |||||| |||||| |||||||||   ||||| || |  | ||
seq2  CTCATAC-AACAGTCCACCTGCCAGTCAAAT--CAGCAAGGATCAGGAAG  1141

seq1  -TCAGGGACAAAAGCCAAAAGCAGGGCAACGTATAAAATAAGCATGTTCA  1193
       ||||| || | |||   ||||  | | |||||||||  | |||||||||
seq2  TTCAGGTAC-ATAGC---AAGCCAGTC-ACGTATAAATAAGGCATGTTCA  1186

seq1  GGACG  1198
      |||||
seq2  GGACG  1191


seq1: chr9_74176137_74177026
seq2: B6Ng01-267C12.g_66_957 (reverse)

seq1  AGCATCATCCATACAGTTTTAGGAACCTCCTGAACCTAGTGAGTTTTTCA  50
      ||||||||||| |||| |||||||||||| ||||||||||||||||||||
seq2  AGCATCATCCAAACAG-TTTAGGAACCTCTTGAACCTAGTGAGTTTTTCA  49

seq1  CCTTCTG-ACTCAATGACCTTCCCTACA-GGGAACATTCTGTGCCTTAAA  98
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  CCTTCTGAACTCAATGACCTTCCCTACAGGGGAACATTCTGTGCCTTAAA  99

seq1  CAGCT-ACCTCCCACCCCCAAGATGGAAGCTTGAGTGTTTGGAGCAAATT  147
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAACCTCCCACCCCCAAGATGGAAGCTTGAGTGTTTGGAGCAAATT  149

seq1  TCCACATGACAGTCAAGGGTCCACAGAGCTAAAGAAGAACACAATCTTCA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGACAGTCAAGGGTCCACAGAGCTAAAGAAGAACACAATCTTCA  199

seq1  TTCTGTTATGGACATTTCACGTTGTGTAAACTAGTGCACGCTATTTACAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTATGGACATTTCACGTTGTGTAAACTAGTGCACGCTATTTACAG  249

seq1  TTCCCTTTGCCTCAAAAAAAGCCACGGAATTTTTTATTTTACAGAGCTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTGCCTCAAAAAAAGCCACGGAATTTTTTATTTTACAGAGCTTA  299

seq1  CTAAAAGATCCTTAAAAAATATGCATCTTAATTAAACTTTCTAACTAATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGATCCTTAAAAAATATGCATCTTAATTAAACTTTCTAACTAATC  349

seq1  AATTATTTAGTCCCATACTTCTCCACACCATGTCTCTCTTATTTGTTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTAGTCCCATACTTCTCCACACCATGTCTCTCTTATTTGTTATT  399

seq1  TAAACATGGCTTGAGTCATCTCTTACTTTTCCCCCACTGTATTCTGGCCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGGCTTGAGTCATCTCTTACTTTTCCCCCACTGTATTCTGGCCC  449

seq1  ATGGGGAAAGCCACAACATCCTGAAGGTACACGTATAGTCAGGATATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAAGCCACAACATCCTGAAGGTACACGTATAGTCAGGATATTTT  499

seq1  ATGCTAACACGAGCCATATTCTTTCTAGTCTATTCTATCAGAAATGCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACACGAGCCATATTCTTTCTAGTCTATTCTATCAGAAATGCAGC  549

seq1  ATAACTAGGGAGACTTTTGCTGAATCCGAAGCAGATTCCTAGAAAACAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGGGAGACTTTTGCTGAATCCGAAGCAGATTCCTAGAAAACAAG  599

seq1  CAGCCATTGATCTCTTTTTATTGATGTGCTTTTACTAACCGACAGGAAGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTGATCTCTTTTTATTGATGTGCTTTTACTAACCGACAGGAAGT  649

seq1  GCTCTTTGAACGCCTCTCCCACCCATTCCACTCCAATAAACCTCTGAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGAACGCCTCTCCCACCCATTCCACTCCAATAAACCTCTGAGTT  699

seq1  TGATCATTTTCAACACATGGTCTCTGCTGCTGTCTGGTCAGTGTGAGCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTTTCAACACATGGTCTCTGCTGCTGTCTGGTCAGTGTGAGCTT  749

seq1  CACAGCCACAGGGCTTAGTGGACACAGATAGCAAAGGATCCCCCAAGAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCACAGGGCTTAGTGGACACAGATAGCAAAGGATCCCCCAAGAGG  799

seq1  AAGCCGTGTTCTCCTGCCTTGGGTTTATATCCTGACCTGGTTCAACCCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTGTTCTCCTGCCTTGGGTTTATATCCTGACCTGGTTCAACCCTT  849

seq1  GTTGTGGGAAGAGTGGTTGGGAAATGGGCCAGGAGAAGAATTC  890
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGGAAGAGTGGTTGGGAAATGGGCCAGGAGAAGAATTC  892


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