BAC Information

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BAC

Clone NameB6Ng01-268N22
Chromosome9 (Build37)
Map Location 21,401,539 - 21,540,173
singlet/doubletdoublet
Overlap geneEG666043, Smarca4, Ldlr
Upstream gene5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik
Downstream geneSpc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-268N22.bB6Ng01-268N22.g
ACCGA071617GA071618
length476847
definitionB6Ng01-268N22.b B6Ng01-268N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,401,539 - 21,402,019)(21,539,327 - 21,540,173)
sequence
agatacccagtacccacataaagcagggcacggctccacactatcctagc
acttgggggtctgaagataggtaaatgccacgagcttgcctgccagccag
tctagctgaattcaagtttagtgagagacctgtccaaaagagagggctgg
gggagccgggcgtggtggcgcacgcctttaatcccagcactcgggaggca
gaggcaggtggatctctgagttcgaggccagcctggtctacaaagtgagt
tccaggacagccagggctatacagagaaaccctgtctcgaaaaatcaaaa
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagagggctggggg
cagactggacacatacatgcctttgatcctagtattcctggaggcaaagt
gggcttatatctgagttcaaggccagctggtctacatagtgagaccttgt
ctttgagaaagagagggagggaggga
gaattccattttgtaatccagctaagtggaaggaggttcaaagggggcaa
ataactctcaaaaaaaaaaaaaaaacaaaaaaaaacaaaaaaaccaaaca
aacaaaaaaaaaccacagctgatcttgggtgatggatttctgaattcaag
gtcagcctggtctacagagtgagttccaggacaggacagccagggctaca
cagagaaaacttgtctcaaaaaacatacaaacaaacaaataaaaagaaat
atgcctcctaggtgcctgacccccctccctcaccggggaacagcagtacc
ctaactttacagaaatgcaaggcactgagaagtgggaccaggaactgaag
cagtgaggggcaaaggttaccattgacgcagccgagctcgtcgctcatgt
ccttgcagtcatgttcacggtcacactggcggctaccgtgaatgcaggag
ccatctgcacactggaattcatcaggtcggcaggtggccaccgctgggga
ggacaggatgatcgtcacaagaagcaccaatacaccgttctgcttaattg
cagttagagggctggcaagatggctcagcaagcaaaggcgattgccggca
agccctaagcctgagctcagtccctggaatcttcacagtgggtggagaga
cctcactgtcaggagctgccctctgacctccatacagagtcccacacaca
tgtgtcacgcacaccactaaatcacgcaggggattggaacttgggactca
tgcatgtgtggtgtggtggtttgaatgagaatggcccgaatgtctcacaa
gtttaaatacttggcccctcagtggtggatctgttgaggatggatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_21401539_21402019
seq2: B6Ng01-268N22.b_46_527

seq1  GAATTCAGATACCCAGTACCCACATAAAGCAGGGCACGGCTCCACACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATACCCAGTACCCACATAAAGCAGGGCACGGCTCCACACTAT  50

seq1  CCTAGCACTTGGGGGTCTGAAGATAGGTAAATGCCACGAGCTTGCCTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCACTTGGGGGTCTGAAGATAGGTAAATGCCACGAGCTTGCCTGCC  100

seq1  AGCCAGTCTAGCTGAATTCAAGTTTAGTGAGAGACCTGTCCAAAAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCTAGCTGAATTCAAGTTTAGTGAGAGACCTGTCCAAAAGAGAG  150

seq1  GGCTGGGGGAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGG  200

seq1  GAGGCAGAGGCAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAA  250

seq1  GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAA  300

seq1  TC-AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGGGC  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGAGGGC  350

seq1  TGGGGGCAGACTGGACACATACATGCCTTTGATCCTAGTATTCCTGGAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCAGACTGGACACATACATGCCTTTGATCCTAGTATTCCTGGAGG  400

seq1  CAAAGTGGGCTTATATCTGAGTTCAAGGCCAGCTGGTCTACATAGTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGGGCTTATATCTGAGTTCAAGGCCAGCTGGTCTACATAGTGAGA  450

seq1  CCTTGTCTTTGAGAGAGAGAGGGAGGGAGGGA  481
      |||||||||||||| |||||||||||||||||
seq2  CCTTGTCTTTGAGAAAGAGAGGGAGGGAGGGA  482

seq1: chr9_21539327_21540173
seq2: B6Ng01-268N22.g_67_913 (reverse)

seq1  TAATCCATCCTCAACAGTTCCACCAACTG-GGGGCCAAGTATTTAAACTT  49
      ||||||||||||||||| |||||| |||| ||||||||||||||||||||
seq2  TAATCCATCCTCAACAGATCCACC-ACTGAGGGGCCAAGTATTTAAACTT  49

seq1  GTGAGACATTCGGGCCATTCTCATTCAAACCACCACACCACACATGCATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACATTCGGGCCATTCTCATTCAAACCACCACACCACACATGCATG  99

seq1  AGTCCCAAGTTCCAATCCCCTGCGTGATTTAGTGGTGTGCGTGACACATG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAGTTCCAATCCCCTGCGTGATTTAGTGGTGTGCGTGACACATG  149

seq1  TGTGTGGGACTCTGTATGGAGGTCAGAGGGCAGCTCCTGACAGTGAGGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGACTCTGTATGGAGGTCAGAGGGCAGCTCCTGACAGTGAGGTC  199

seq1  TCTCCACCCACTGTGAAGATTCCAGGGACTGAGCTCAGGCTTAGGGCTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCCACTGTGAAGATTCCAGGGACTGAGCTCAGGCTTAGGGCTTG  249

seq1  CCGGCAATCGCCTTTGCTTGCTGAGCCATCTTGCCAGCCCTCTAACTGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAATCGCCTTTGCTTGCTGAGCCATCTTGCCAGCCCTCTAACTGCA  299

seq1  ATTAAGCAGAACGGTGTATTGGTGCTTCTTGTGACGATCATCCTGTCCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCAGAACGGTGTATTGGTGCTTCTTGTGACGATCATCCTGTCCTC  349

seq1  CCCAGCGGTGGCCACCTGCCGACCTGATGAATTCCAGTGTGCAGATGGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCGGTGGCCACCTGCCGACCTGATGAATTCCAGTGTGCAGATGGCT  399

seq1  CCTGCATTCACGGTAGCCGCCAGTGTGACCGTGAACATGACTGCAAGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTCACGGTAGCCGCCAGTGTGACCGTGAACATGACTGCAAGGAC  449

seq1  ATGAGCGACGAGCTCGGCTGCGTCAATGGTAACCTTTGCCCCTCACTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCGACGAGCTCGGCTGCGTCAATGGTAACCTTTGCCCCTCACTGCT  499

seq1  TCAGTTCCTGGTCCCACTTCTCAGTGCCTTGCATTTCTGTAAAGTTAGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTGGTCCCACTTCTCAGTGCCTTGCATTTCTGTAAAGTTAGGG  549

seq1  TACTGCTGTTCCCCGGTGAGGGAGGGGGGTCAGGCACCTAGGAGGCATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGTTCCCCGGTGAGGGAGGGGGGTCAGGCACCTAGGAGGCATAT  599

seq1  TTCTTTTTATTTGTTTGTTTGTATGTTTTTTGAGACAAGTTTTCTCTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTATTTGTTTGTTTGTATGTTTTTTGAGACAAGTTTTCTCTGTG  649

seq1  TAGCCCTGGCTGTCCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTGGCTGTCCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCT  699

seq1  TGAATTCAGAAATCCATCACCCAAGATCAGCTGTGGTTTTTTTTTGTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCAGAAATCCATCACCCAAGATCAGCTGTGGTTTTTTTTTGTTTG  749

seq1  TTTGGTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTGAGAGTTATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTGAGAGTTATTT  799

seq1  GCCCCCTTTGAACCTCCTTCCACTTAGCTGGATTACAAAATGGAATTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTTTGAACCTCCTTCCACTTAGCTGGATTACAAAATGGAATTC  847