BAC Information

Click to search

BAC

Clone NameB6Ng01-270E19
Chromosome9 (Build37)
Map Location 68,570,124 - 68,695,957
singlet/doubletdoublet
Overlap geneRora, 9530091C08Rik
Upstream geneLOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270E19.bB6Ng01-270E19.g
ACCGA072674GA072675
length1,152771
definitionB6Ng01-270E19.b B6Ng01-270E19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,694,799 - 68,695,957)(68,570,124 - 68,570,895)
sequence
gaattcaaattccaacccatccacaccctagctgtgtaaccaagggaaat
gacataactgctctgtgcatcctctttcttattttctacatcgaattgtg
gtgttgctaggtgagaattggaaggaatgtacctggtgtagtgctaggta
tgaggtaagtgctcccaaaacattagctgcagttaaggatggatctatcc
aaacgtactttcaacgactgaatccaatttaggggggagaaggtaagcag
aaacagatttcaatgagtgaccacagcgaagcatgagcaccgtctggaat
ccttattaggtatcctctcatcactatacctaccacctggtcagcactgc
tctagaagctgtatggatatcctatacaatatgagcttcctgtagcgcga
tacctcctaacaacccacctgggtgcagacctagctttggaagaagaggc
aaagcaaatgaaccaccaggcacaagacctgccacctccccttgaaggga
tccaattaaacaccagtctgggaagagatgaccctgcagtccaaacccaa
ctcattggatgcaacaagcacttattgagcccttgggggtgtatcaggag
atctgagaggtgctgaggatgatgccaagagaaacaagatgaccctgatc
tcaagaaagccataatttagagggaggaagagacaaactttaaggcaaga
tctcctgggtgaacacaatgatggaagagggatggaagttgagggaaagg
caagctggagtccttcattctggtgcaggcagtcagaaggctttcctgga
gagcgacagagcaaacattggcagagatcaataaagccagcctgtgaagt
ggttaatggcattttcattcacagaaacaacccagggatgcctgtgggac
cacccctgactcagcatgaacaggcgtgtgcttaagacgtgattagtgtt
tgttgtagtgttaatgcatcatgttttggaaaacaaggatgacatgtgtc
tgggatccccattctcctcaaagaggagaaggatgcttttcacgccgcag
accatttttcaaagcacactacccaagtgagcgggcgaagtagcaacgca
actctggtggttccaaaagcatggaacctgcattcattccagatagcatg
cg

gaattccccatcttttcctccaaaggcgtgtgctcagtctctctcctcag
caccatgggtatcatcaccacatctctggggttctgagcagtagtaacag
ggcaagcaccagggtcccaccgtatttttggctgtggccctttagccacc
gtctttccaaacactgcatctagaaaatgctgctttccaagggagctttg
cattttttttttcagaaatactgagaaaagggaatttacttatggaatct
taaagttcaataatatgatttttaccttgtggagcacagttcatcgttaa
aatgatgacaatggggaaagcgtgggatggcacatgcacttgtaccattg
tcagtcgtcttctttctcatcttacatctaacacctgatgctggacactc
ggcaagctagaatctatgaacaagaaacagctttgtcagagtgggcctct
acaggcaggcttgcatagcgtttgaattactgtttgttgtttgagctaac
ttttgacagttcttgggttagtaatatctgtaggtgacatagtggttcgg
tgggatattgatgggcatacatatacatatacatatacaatcatttattc
tttccaacaaccttttgataggaacatgaattagcattacaattttatag
acatagcaaccttggttacatagttggtgattggagaagggactagtgtg
aatcatcttcaccttagaagctatttaattgcactatatttttaaaattg
tatagtaatttggtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_68694799_68695957
seq2: B6Ng01-270E19.b_42_1193 (reverse)

seq1  CGCATTGCTA-CTGGAAATGAATGCAAGTTTTCCATGCCTTTTGACCCAC  49
      |||| ||||| |||| |||||||||| |  |||||||| ||| || ||||
seq2  CGCA-TGCTATCTGG-AATGAATGCAGG--TTCCATGCTTTTGGAACCAC  46

seq1  CAGGAGTTTGCCGTTGCTACCTCG-CCGCTCACTTGGGTAGTGTGCTTTT  98
      || |||||   ||||||||| ||| ||||||||||||||||||||| |||
seq2  CA-GAGTT--GCGTTGCTACTTCGCCCGCTCACTTGGGTAGTGTGC-TTT  92

seq1  GAAAAATGGTCCTGC-GCGTGAAAAGCATCCCTTCT-CTCTTTGAGGAGA  146
      |||||||||| |||| ||||||||||||| |||||| |||||||||||||
seq2  GAAAAATGGT-CTGCGGCGTGAAAAGCAT-CCTTCTCCTCTTTGAGGAGA  140

seq1  ATGGGGATCCCAGACACATGTTCATCCTTGTTTTCCAAAACATGATGCAT  196
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGGGGATCCCAGACACATG-TCATCCTTGTTTTCCAAAACATGATGCAT  189

seq1  TAACACTACAACAAACACTAATCACGTCTTAAGCACACGCCTGTTCATGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTACAACAAACACTAATCACGTCTTAAGCACACGCCTGTTCATGC  239

seq1  TGAGTCAGGGGTGGTCCCACAGGCATCCCTGGGTTGTTTCTGTGAATGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAGGGGTGGTCCCACAGGCATCCCTGGGTTGTTTCTGTGAATGAA  289

seq1  AATGCCATTAACCACTTCACAGGCTGGCTTTATTGATCTCTGCCAATGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATTAACCACTTCACAGGCTGGCTTTATTGATCTCTGCCAATGTT  339

seq1  TGCTCTGTCGCTCTCCAGGAAAGCCTTCTGACTGCCTGCACCAGAATGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTCGCTCTCCAGGAAAGCCTTCTGACTGCCTGCACCAGAATGAA  389

seq1  GGACTCCAGCTTGCCTTTCCCTCAACTTCCATCCCTCTTCCATCATTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAGCTTGCCTTTCCCTCAACTTCCATCCCTCTTCCATCATTGTG  439

seq1  TTCACCCAGGAGATCTTGCCTTAAAGTTTGTCTCTTCCTCCCTCTAAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCAGGAGATCTTGCCTTAAAGTTTGTCTCTTCCTCCCTCTAAATT  489

seq1  ATGGCTTTCTTGAGATCAGGGTCATCTTGTTTCTCTTGGCATCATCCTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTCTTGAGATCAGGGTCATCTTGTTTCTCTTGGCATCATCCTCA  539

seq1  GCACCTCTCAGATCTCCTGATACACCCCCAAGGGCTCAATAAGTGCTTGT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTCAGATCTCCTGATACACCCCCAAGGGCTCAATAAGTGCTTGT  589

seq1  TGCATCCAATGAGTTGGGTTTGGACTGCAGGGTCATCTCTTCCCAGACTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCAATGAGTTGGGTTTGGACTGCAGGGTCATCTCTTCCCAGACTG  639

seq1  GTGTTTAATTGGATCCCTTCAAGGGGAGGTGGCAGGTCTTGTGCCTGGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAATTGGATCCCTTCAAGGGGAGGTGGCAGGTCTTGTGCCTGGTG  689

seq1  GTTCATTTGCTTTGCCTCTTCTTCCAAAGCTAGGTCTGCACCCAGGTGGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTGCTTTGCCTCTTCTTCCAAAGCTAGGTCTGCACCCAGGTGGG  739

seq1  TTGTTAGGAGGTATCGCGCTACAGGAAGCTCATATTGTATAGGATATCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGGAGGTATCGCGCTACAGGAAGCTCATATTGTATAGGATATCCA  789

seq1  TACAGCTTCTAGAGCAGTGCTGACCAGGTGGTAGGTATAGTGATGAGAGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTCTAGAGCAGTGCTGACCAGGTGGTAGGTATAGTGATGAGAGG  839

seq1  ATACCTAATAAGGATTCCAGACGGTGCTCATGCTTCGCTGTGGTCACTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAATAAGGATTCCAGACGGTGCTCATGCTTCGCTGTGGTCACTCA  889

seq1  TTGAAATCTGTTTCTGCTTACCTTCTCCCCCCTAAATTGGATTCAGTCGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATCTGTTTCTGCTTACCTTCTCCCCCCTAAATTGGATTCAGTCGT  939

seq1  TGAAAGTACGTTTGGATAGATCCATCCTTAACTGCAGCTAATGTTTTGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTACGTTTGGATAGATCCATCCTTAACTGCAGCTAATGTTTTGGG  989

seq1  AGCACTTACCTCATACCTAGCACTACACCAGGTACATTCCTTCCAATTCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTACCTCATACCTAGCACTACACCAGGTACATTCCTTCCAATTCT  1039

seq1  CACCTAGCAACACCACAATTCGATGTAGAAAATAAGAAAGAGGATGCACA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAGCAACACCACAATTCGATGTAGAAAATAAGAAAGAGGATGCACA  1089

seq1  GAGCAGTTATGTCATTTCCCTTGGTTACACAGCTAGGGTGTGGATGGGTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTTATGTCATTTCCCTTGGTTACACAGCTAGGGTGTGGATGGGTT  1139

seq1  GGAATTTGAATTC  1159
      |||||||||||||
seq2  GGAATTTGAATTC  1152


seq1: chr9_68570124_68570895
seq2: B6Ng01-270E19.g_63_833

seq1  GAATTCCCCATCTTTTCCTCCAAAGGCGTGTGCTCAGTCTCTCTCCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATCTTTTCCTCCAAAGGCGTGTGCTCAGTCTCTCTCCTCAG  50

seq1  CACCATGGGTATCATCACCACATCTCTGGGGTTCTGAGCAGTAGTAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGGTATCATCACCACATCTCTGGGGTTCTGAGCAGTAGTAACAG  100

seq1  GGCAAGCACCAGGGTCCCACCGTATTTTTGGCTGTGGCCCTTTAGCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCACCAGGGTCCCACCGTATTTTTGGCTGTGGCCCTTTAGCCACC  150

seq1  GTCTTTCCAAACACTGCATCTAGAAAATGCTGCTTTCCAAGGGAGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCAAACACTGCATCTAGAAAATGCTGCTTTCCAAGGGAGCTTTG  200

seq1  CATTTTTTTTTTCAGAAATACTGAGAAAAGGGAATTTACTTATGGAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTTCAGAAATACTGAGAAAAGGGAATTTACTTATGGAATCT  250

seq1  TAAAGTTCAATAATATGATTTTTACCTTGTGGAGCACAGTTCATCGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTCAATAATATGATTTTTACCTTGTGGAGCACAGTTCATCGTTAA  300

seq1  AATGATGACAATGGGGAAAGCGTGGGATGGCACATGCACTTGTACCATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGACAATGGGGAAAGCGTGGGATGGCACATGCACTTGTACCATTG  350

seq1  TCAGTCGTCTTCTTTCTCATCTTACATCTAACACCTGATGCTGGACACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCGTCTTCTTTCTCATCTTACATCTAACACCTGATGCTGGACACTC  400

seq1  GGCAAGCTAGAATCTATGAACAAGAAACAGCTTTGTCAGAGTGGGCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTAGAATCTATGAACAAGAAACAGCTTTGTCAGAGTGGGCCTCT  450

seq1  ACAGGCAGGCTTGCATAGCGTTTGAATTACTGTTTGTTGTTTGAGCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGGCTTGCATAGCGTTTGAATTACTGTTTGTTGTTTGAGCTAAC  500

seq1  TTTTGACAGTTCTTGGGTTAGTAATATCTGTAGGTGACATAGTGGTTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAGTTCTTGGGTTAGTAATATCTGTAGGTGACATAGTGGTTCGG  550

seq1  TGGGATATTGATGGGCATACATATACATATACATATACAATCATTTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATATTGATGGGCATACATATACATATACATATACAATCATTTATTC  600

seq1  TTTCCAACAACCTTTTGATAGGAACATGAATTAGCATTACAATTTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACAACCTTTTGATAGGAACATGAATTAGCATTACAATTTTATAG  650

seq1  ACATAGCAACCTTGGTTACATAGTTGGTGATTGGAGAAGGGACTAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCAACCTTGGTTACATAGTTGGTGATTGGAGAAGGGACTAGTGTG  700

seq1  AATCATCTTCACCTTAGAAGCTATTTAATTGCACTATATTTTTAAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTTCACCTTAGAAGCTATTTAATTGCACTATATTTTTAAAATTG  750

seq1  TATAGTAATTTGTGTGTGTGTG  772
      |||||||||||| |||||||||
seq2  TATAGTAATTTG-GTGTGTGTG  771


| Home | SequenceCutter | Blast | Download |