BAC Information

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BAC

Clone NameB6Ng01-270H13
Chromosome9 (Build37)
Map Location 110,754,075 - 110,938,442
singlet/doubletdoublet
Overlap gene1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf
Upstream geneCdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230
Downstream geneCcrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270H13.bB6Ng01-270H13.g
ACCGA072801GA072802
length1,139191
definitionB6Ng01-270H13.b B6Ng01-270H13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,937,290 - 110,938,442)(110,754,075 - 110,754,265)
sequence
gaattcttttagtcaaaagtctgaaatagttacactatctttccaaagac
caaccccaaaatgaggatatgttaagggtgctaaagactgctcctgaagg
aggaagcgaaacatcttcacataccgtcagtattctgcaagacagtggag
tccttcaaaaatgcaacatttcctgccttctcagccagacacctaaaata
ttttccaaaataaatacaccacaagggagacaccattagaattctcataa
atatttgtgacatgcattccaaaaactaaaacataaaagtaaatatacac
aagttgaaactgtttccagggatttaagatttaacactgcagattgcaag
catctgggtaacctctccctctaaaaccccagtgagatgacaccatgaga
tttctcttttttttaacccataaacatataaaagagaaagagaaggtaat
gaagacaccctttggaatctggaaagaaaatggctgagcagtcctggcct
aactgaaggaggaaggctgtaacataaggcaggggtggtagcagctctga
cgaaagttaatgtgcaaccatgggatgccagaaaggctcagcaacaggaa
atataaggcatcgctgagagtggctggaaacagagtttaatgctcccatc
ccatgcagcaactctcatcccaacatctgggaggttgacccttaacacac
acagtatagggaaacaaacccaatggaagtataggaaaacacaaccgaga
agacggagagggagctgggtacagcgactcatgccagtcatcccaggact
ctggaagctgagacaagtggattgctgtgagtgtgaagcaagcctgggct
acagggttagatctgtctcaacattccccgcctccaacccccatccataa
aggagtaaactgaaaagtctgtgttctagaaaatggagtcaatccctacg
caccacccaggctggccattagggctatccctcccaagatgtgggcagtg
agactctcgtcagagagtctgatgagtcaagaaacatcgtagactctgct
attagatgctcatgacaatggcacaaacagagccctgactggggccagca
cctcacaactggaaactgatgaagctgaagtcagctgtg
actatgtggatgaggttagtcacaaacccacagagatctacctgcctctg
ccttccaagggctggggttaaatgtgtgcaacattctcaggtcttggctt
aactttcttttgcatgtgaccatcagagacccaatacaaaagtctgggct
ttgattttccagtatagggggccatggtggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110937290_110938442
seq2: B6Ng01-270H13.b_44_1182 (reverse)

seq1  CACAGCTGACTCTCAGCTCTCCATCAGTTTTCCAG-TGTGAGGTGCTGGG  49
      ||||||||||| ||||  || |||||| ||||||| ||||||||||| ||
seq2  CACAGCTGACT-TCAG--CTTCATCAG-TTTCCAGTTGTGAGGTGCT-GG  45

seq1  CCCCAGTTCAGGGCTCTTGGTTTGTGCCATTTGTCATGAGCATCCTAATA  99
      |||||| ||||||||||  |||||||||| ||||||||||||| ||||||
seq2  CCCCAG-TCAGGGCTCT--GTTTGTGCCA-TTGTCATGAGCAT-CTAATA  90

seq1  GCAGAGTCTACGGATGTTTTCTTGGACTCATCAGACTCTCTTGACGAAGA  149
      ||||||||||| |||| |||||| |||||||||||||||| ||||| |||
seq2  GCAGAGTCTAC-GATG-TTTCTT-GACTCATCAGACTCTC-TGACG-AGA  135

seq1  GTCTCACTGCCCACATCTTGGGAGGGATAGCCCTAATGGCCAGCCTGGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCACTGCCCACATCTTGGGAGGGATAGCCCTAATGGCCAGCCTGGGT  185

seq1  GGTGCGTAGGGATTGACTCCATTTTCTAGAACACAGACTTTTCAGTTTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCGTAGGGATTGACTCCATTTTCTAGAACACAGACTTTTCAGTTTAC  235

seq1  TCCTTTATGGATGGGGGTTGGAGGCGGGGAATGTTGAGACAGATCTAACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTATGGATGGGGGTTGGAGGCGGGGAATGTTGAGACAGATCTAACC  285

seq1  CTGTAGCCCAGGCTTGCTTCACACTCACAGCAATCCACTTGTCTCAGCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCCAGGCTTGCTTCACACTCACAGCAATCCACTTGTCTCAGCTT  335

seq1  CCAGAGTCCTGGGATGACTGGCATGAGTCGCTGTACCCAGCTCCCTCTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTCCTGGGATGACTGGCATGAGTCGCTGTACCCAGCTCCCTCTCC  385

seq1  GTCTTCTCGGTTGTGTTTTCCTATACTTCCATTGGGTTTGTTTCCCTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCGGTTGTGTTTTCCTATACTTCCATTGGGTTTGTTTCCCTATA  435

seq1  CTGTGTGTGTTAAGGGTCAACCTCCCAGATGTTGGGATGAGAGTTGCTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTTAAGGGTCAACCTCCCAGATGTTGGGATGAGAGTTGCTGC  485

seq1  ATGGGATGGGAGCATTAAACTCTGTTTCCAGCCACTCTCAGCGATGCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGGGAGCATTAAACTCTGTTTCCAGCCACTCTCAGCGATGCCTT  535

seq1  ATATTTCCTGTTGCTGAGCCTTTCTGGCATCCCATGGTTGCACATTAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCTGTTGCTGAGCCTTTCTGGCATCCCATGGTTGCACATTAACT  585

seq1  TTCGTCAGAGCTGCTACCACCCCTGCCTTATGTTACAGCCTTCCTCCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCAGAGCTGCTACCACCCCTGCCTTATGTTACAGCCTTCCTCCTTC  635

seq1  AGTTAGGCCAGGACTGCTCAGCCATTTTCTTTCCAGATTCCAAAGGGTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGCCAGGACTGCTCAGCCATTTTCTTTCCAGATTCCAAAGGGTGT  685

seq1  CTTCATTACCTTCTCTTTCTCTTTTATATGTTTATGGGTTAAAAAAAAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTACCTTCTCTTTCTCTTTTATATGTTTATGGGTTAAAAAAAAGA  735

seq1  GAAATCTCATGGTGTCATCTCACTGGGGTTTTAGAGGGAGAGGTTACCCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTCATGGTGTCATCTCACTGGGGTTTTAGAGGGAGAGGTTACCCA  785

seq1  GATGCTTGCAATCTGCAGTGTTAAATCTTAAATCCCTGGAAACAGTTTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGCAATCTGCAGTGTTAAATCTTAAATCCCTGGAAACAGTTTCA  835

seq1  ACTTGTGTATATTTACTTTTATGTTTTAGTTTTTGGAATGCATGTCACAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTATATTTACTTTTATGTTTTAGTTTTTGGAATGCATGTCACAA  885

seq1  ATATTTATGAGAATTCTAATGGTGTCTCCCTTGTGGTGTATTTATTTTGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATGAGAATTCTAATGGTGTCTCCCTTGTGGTGTATTTATTTTGG  935

seq1  AAAATATTTTAGGTGTCTGGCTGAGAAGGCAGGAAATGTTGCATTTTTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTTAGGTGTCTGGCTGAGAAGGCAGGAAATGTTGCATTTTTGA  985

seq1  AGGACTCCACTGTCTTGCAGAATACTGACGGTATGTGAAGATGTTTCGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCCACTGTCTTGCAGAATACTGACGGTATGTGAAGATGTTTCGCT  1035

seq1  TCCTCCTTCAGGAGCAGTCTTTAGCACCCTTAACATATCCTCATTTTGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTTCAGGAGCAGTCTTTAGCACCCTTAACATATCCTCATTTTGGG  1085

seq1  GTTGGTCTTTGGAAAGATAGTGTAACTATTTCAGACTTTTGACTAAAAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTTTGGAAAGATAGTGTAACTATTTCAGACTTTTGACTAAAAGA  1135

seq1  ATTC  1153
      ||||
seq2  ATTC  1139

seq1: chr9_110754075_110754265
seq2: B6Ng01-270H13.g_71_261

seq1  ACTATGTGGATGAGGTTAGTCACAAACCCACAGAGATCTACCTGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGGATGAGGTTAGTCACAAACCCACAGAGATCTACCTGCCTCTG  50

seq1  CCTTCCAAGGGCTGGGGTTAAATGTGTGCAACATTCTCAGGTCTTGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAGGGCTGGGGTTAAATGTGTGCAACATTCTCAGGTCTTGGCTT  100

seq1  AACTTTCTTTTGCATGTGACCATCAGAGACCCAATACAAAAGTCTGGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTTTGCATGTGACCATCAGAGACCCAATACAAAAGTCTGGGCT  150

seq1  TTGATTTTCCAGTATAGGGGGCCATGGTGGGGGGGGGGGGG  191
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTTCCAGTATAGGGGGCCATGGTGGGGGGGGGGGGG  191