BAC Information

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BAC

Clone NameB6Ng01-271F02
Chromosome1 (Build37)9 (Build37)
Map Location 88,968,371 - 88,969,21013,976,756 - 13,977,242
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePsmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256
Downstream geneAkp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271F02.bB6Ng01-271F02.g
ACCGA073434GA073435
length904735
definitionB6Ng01-271F02.b B6Ng01-271F02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,968,371 - 88,969,210)(13,976,756 - 13,977,242)
sequence
agacatgtaacggatagctgatgctcaggccatgtctctcactctctctc
tcggcttgcttcccctggctttctcagcctgctttcttatagaacccagg
actaccagcccagggatggcaccacccacagtgggctgggccctcccctt
gatcactaattgagacaaaaccttacagctgaatctcatggaggcatttc
ctcaagggaggctcccttctctgtgaaaactccagctggtgtcaagttga
cacacaaaaccagccagtacaacgttcttctgtgtgaccggggcttttaa
tactttggctttagcatgttacctgctctacctctgcagccagctcaggg
gtggggccttaggcaagaactgagctgtgtgtggttacgttatttgaccc
ttgcaaacttgaagctcactccaggaggtggaacctggaaaccatgaagc
atcctgtactccgtacagggcttctcatgtctgaattttccaatgcactt
ccaatgcctgcacctctccctcacctggtctctgtctctcactctgcctc
aacccgaacattcagtctttctttcagcaaagcactgctggcgttatgct
gtgtcatagttcattttattattgcaaaatctcccaggagaatgacggaa
gcatactttgcttggacattaatgtgcaagccgggcccagaggcacatgt
gtgtaattatagcacctgggaggttgtggcaggaggatcatgagttttga
ggccactggtggggagctgaggactgtcaagagcctttggctacatcaac
ctctccaggctctgttggggtgtgcttgtgtgacacctgaaaggcaagag
aaacccaaccccactccttgttcagtcccttgtcctatggggaataccaa
gttc
gaattccttgtctgtcccacacttttatcatgaatgtcccgttggatttg
ctgactcgcgttcccagcgggtaacgagatgatcatggggttctcgtctt
tgatgtcgtttgggtactggaacacattgaaggatttccctacattgaac
cctccctgcatgcataagatgaaacctactaggtgcgatggatgactgcc
tccagctgttcttacactcgggaaacaagcaatcacttgaggatttttgg
ggcctgcttatggcggaaattggtccttgacctctaccgctgtccgggcg
accccttctgcccggtgttgactgaataagggtttgtgtcacccttgtct
gccattttctcccacattctcttgtgtagaggtcttcaagccaacttccc
cacctgaagttatttcagctaatgtctatttcctgtctggacttcttcaa
aagggagatgagctgtgtgacgaataggacagtgcctgctgctttattgt
gatgttttcaaatgttgataataatgtctagcatatagcaattatacaat
aaagagttattgaacgaacagtgaatgactcctccggggctggatggcgg
gtttccctgagagatccaatcaatagactgtgggtcaaaaaggcagagct
cagggggaggggctcataaggctccacctctctttgacactctgtatagt
taagggattgcagagggatgaacaagttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_88968371_88969210
seq2: B6Ng01-271F02.b_108_959 (reverse)

seq1  GCACTTGGT-GTCCCCATAGGACAA-GGACTGAACAA-GAGTGGGCT--G  45
      | |||||||  |||||||||||||| ||||||||||| ||||||| |  |
seq2  GAACTTGGTATTCCCCATAGGACAAGGGACTGAACAAGGAGTGGGGTTGG  50

seq1  GCTTCTCTTGCC-TTCA-GTGTC-CAC-AGCACA-CCCAACAGAGCCTGG  90
      | |||||||||| |||| ||||| ||| |||||| |||||||||||||||
seq2  GTTTCTCTTGCCTTTCAGGTGTCACACAAGCACACCCCAACAGAGCCTGG  100

seq1  AGAGGTTGATGTAGCC-AAGGCTCTTTGACAGTCCTCAGCT-CCCACCAG  138
      |||||||||||||||| ||||||| |||||||||||||||| ||||||||
seq2  AGAGGTTGATGTAGCCAAAGGCTC-TTGACAGTCCTCAGCTCCCCACCAG  149

seq1  TGGCCTC-AAACTCATGATCCTCCTGCCACAACCTCCCAGGTGCTATAAT  187
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCAAAACTCATGATCCTCCTGCCACAACCTCCCAGGTGCTATAAT  199

seq1  TACACACATGTGCCTCTGGGCCCGGCTTGCACATTAATGTCCAAGCAAAG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATGTGCCTCTGGGCCCGGCTTGCACATTAATGTCCAAGCAAAG  249

seq1  TATGCTTCCGTCATTCTCCTGGGAGATTTTGCAATAATAAAATGAACTAT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTCCGTCATTCTCCTGGGAGATTTTGCAATAATAAAATGAACTAT  299

seq1  GACACAGCATAACGCCAGCAGTGCTTTGCTGAAAGAAAGACTGAATGTTC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGCATAACGCCAGCAGTGCTTTGCTGAAAGAAAGACTGAATGTTC  349

seq1  GGGTTGAGGCAGAGTGAGAGACAGAGACCAGGTGAGGGAGAGGTGCAGGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGGCAGAGTGAGAGACAGAGACCAGGTGAGGGAGAGGTGCAGGC  399

seq1  ATTGGAAGTGCATTGGAAAATTCAGACATGAGAAGCCCTGTACGGAGTAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGTGCATTGGAAAATTCAGACATGAGAAGCCCTGTACGGAGTAC  449

seq1  AGGATGCTTCATGGTTTCCAGGTTCCACCTCCTGGAGTGAGCTTCAAGTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCTTCATGGTTTCCAGGTTCCACCTCCTGGAGTGAGCTTCAAGTT  499

seq1  TGCAAGGGTCAAATAACGTAACCACACACAGCTCAGTTCTTGCCTAAGGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGTCAAATAACGTAACCACACACAGCTCAGTTCTTGCCTAAGGC  549

seq1  CCCACCCCTGAGCTGGCTGCAGAGGTAGAGCAGGTAACATGCTAAAGCCA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCTGAGCTGGCTGCAGAGGTAGAGCAGGTAACATGCTAAAGCCA  599

seq1  AAGTATTAAAAGCCCCGGTCACACAGAAGAACGTTGTACTGGCTGGTTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTAAAAGCCCCGGTCACACAGAAGAACGTTGTACTGGCTGGTTTT  649

seq1  GTGTGTCAACTTGACACCAGCTGGAGTTTTCACAGAGAAGGGAGCCTCCC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAACTTGACACCAGCTGGAGTTTTCACAGAGAAGGGAGCCTCCC  699

seq1  TTGAGGAAATGCCTCCATGAGATTCAGCTGTAAGGTTTTGTCTCAATTAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAATGCCTCCATGAGATTCAGCTGTAAGGTTTTGTCTCAATTAG  749

seq1  TGATCAAGGGGAGGGCCCAGCCCACTGTGGGTGGTGCCATCCCTGGGCTG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAAGGGGAGGGCCCAGCCCACTGTGGGTGGTGCCATCCCTGGGCTG  799

seq1  GTAGTCCTGGGTTCTATAAGAAAGCAGGCTGAGAAAGCCAGGGGAAGCAA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCTGGGTTCTATAAGAAAGCAGGCTGAGAAAGCCAGGGGAAGCAA  849

seq1  GCC  840
      |||
seq2  GCC  852

seq1: chr9_13976756_13977242
seq2: B6Ng01-271F02.g_315_800 (reverse)

seq1  AAAAAAAAACCTCTTCCTCCCTCTGCAAT-CCTTAACTACACAGAGTATC  49
      |||||||||| | ||| |||||||||||| ||||||||| ||||||| ||
seq2  AAAAAAAAACTTGTTCATCCCTCTGCAATCCCTTAACTATACAGAGTGTC  50

seq1  AAAGAGAGGTGGAGCCTTCTGAGCCCCTCCCCCTGAGCTCTGCCTTTCTG  99
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  AAAGAGAGGTGGAGCCTTATGAGCCCCTCCCCCTGAGCTCTGCCTTTTTG  100

seq1  ACCCACAGTCTATTGATTGGATCTCTCAGGGAAACCCGCCATCCAGCCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGTCTATTGATTGGATCTCTCAGGGAAACCCGCCATCCAGCCCC  150

seq1  GGAGGAGTCATTCACTGTTCGTTCAATAACTCTTTATTGTATAATTGCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGTCATTCACTGTTCGTTCAATAACTCTTTATTGTATAATTGCTA  200

seq1  TATGCTAGACATTATTCTAAACATTTGAAAACATCACAATAAAGCAGCAG  249
      |||||||||||||||| | |||||||||||||||||||||||||||||||
seq2  TATGCTAGACATTATTATCAACATTTGAAAACATCACAATAAAGCAGCAG  250

seq1  GCACCGTCCTTTTCGTCACACAGCTCATCTCCCTTTTGAAGAAGTCCAGA  299
      |||| ||||| |||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTCCTATTCGTCACACAGCTCATCTCCCTTTTGAAGAAGTCCAGA  300

seq1  CAGGAAATAGACATTAGCTGAAATAACTTCAGGTGGGGAACTTGGCTTGA  349
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAGGAAATAGACATTAGCTGAAATAACTTCAGGTGGGGAAGTTGGCTTGA  350

seq1  AGACCACTACACAAGAGAATGTGGGAGAAAATGGCAGACAAGGGTGACAC  399
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCTACACAAGAGAATGTGGGAGAAAATGGCAGACAAGGGTGACAC  400

seq1  AAACCTTTCTTCAGACAACACAGGGCAGATGGGGTCACTTGGACAGCGGT  449
      ||||| || ||||| |||||| ||||||| |||||| |  ||||||||||
seq2  AAACCCTTATTCAGTCAACACCGGGCAGAAGGGGTCGCCCGGACAGCGGT  450

seq1  GTAAGGTCAAGGCTCTCTGCACAGCCCTAAGCAGGCCC  487
         |||||||||  |  |   | ||| |||||||||||
seq2  -AGAGGTCAAGGACCAAT-TTCCGCCATAAGCAGGCCC  486