BAC Information

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BAC

Clone NameB6Ng01-271O18
Chromosome9 (Build37)
Map Location 86,733,878 - 86,734,997
singlet/doubletsinglet
Overlap geneSnap91
Upstream gene9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2, Mod1, Prss35
Downstream geneC030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-271O18.bB6Ng01-271O18.g
ACCGA073878GA073879
length7401,112
definitionB6Ng01-271O18.b B6Ng01-271O18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaacagaggattttctaatggctgggaagcacttaaagaaatg
ttcaacgtccttagccatcaggaaaatgcaaatcaaaatgaccccgagat
tccaccttacacctgtcagtttggctagatcaaaaactcaggtgacagca
gatgctggtgaggatgtggagaaaggggaacactcctccattgatagtgg
aactgcaaacttgtataactactctggaaatcaatttagcagtttttcag
aaaattagcaatagttctacctcaagacccagctataacactcctgggta
tatacccaaaagatgctccaccatacgcccaggacatgtgctcaattatg
ttcatagcagttttattcataatagttaggaactggaaacaacctagatg
tccctcaaccaaagatggataaagaaaatgtagtacatttacacagtgga
gtactacatagctattaaaaacaaggacacaatgaaatttgcaggcaaat
gggtgaaactagaaaacaccctgagtgaggtaacccataccccgaaagac
acacaatgctatatactcacttataagtggatattagtcataaagtagag
aataatcatgaataacccacagactcaaagaagctaagtaacaaggagga
cctaaggggaagacgctcaattctcactgagaagaagaaataaaatagac
actgggagtgtgtggagggagggaactgggagtggggtaa
gaattccaggctggattcagaagctgaggtagaggctagtgaggagagac
actcactctctgccttgcttgctcaatttgctttcttacacacccaaggt
gacctgcccagagatggtgctgcccacagtgggctgggtcctcccacatc
agtcattaatcaaaataatgctctgcaagacttccctacaggccagtctc
cagtctcatggaaacatttcctcaactaaggttttctcatcccagatgac
ctgagtttgtgtcaagttgacaaaaattaaccagcacaaatacagtttca
attcaactgaaaaagaaaaagttcaagagtaaataaatatattggttaaa
atacatatattaatgtgttcatatgtaagaatactacagtataatttttt
tcacttaactcttgtctacttaattttgaagtcatgctttagtaatgagc
ttattgtttgaggtgaattttatatataatagttactggatatcttctat
tttcatagatttgatccaggctaccaatgagaccaatgtcaatatccctc
agatggccgacaccctctttgagcgggcgacaaacagtagctgggtggtg
gtatttaaagctttagtgaccacacaccatctcatggtgcatggaaatga
ggtaaccaaataaacaattgtttcttggtagagcctggggtagcagaaca
tgatggtaatttaagacctgtgaattttcactaataggaggagaagaagt
acgagtttcacagttgtcttgaatataatttcaccctaggacttagctgt
ctttaagtgtattttgattgggaccttgtctcagtgatatggccacattt
aaatgtttagtctaggtgaatgtattccgtgggataaaaatgttaagaga
aggatcaggagggctgttttttacagaaagtaactttttgtgagtgtgaa
tgagattgctttaatggaatgttatttgtgaaaatatgataagtaaatac
ttcttttatacagaatcctagtgagcctatgaatttgagtgttttctagc
tattgcagaagtaaagttcacaaaaatttaatgtgaattccaatgatgtt
tctctgggagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_86733878_86734997
seq2: B6Ng01-271O18.g_67_1178 (reverse)

seq1  AACT-CCAGAGAAACATTCATTG--AATCACAATTAAATTTTGTGAACTT  47
      |||| ||||||||||| ||||||  | ||||| | || |||||||||| |
seq2  AACTCCCAGAGAAACA-TCATTGGAATTCACATTAAATTTTTGTGAAC-T  48

seq1  TTACTTCTGCATAGGCTAG-AAACACTCAAAATTCAATAGGCTTCACTAG  96
      |||||||||||   ||||| |||||||| |||||| |||||| |||||||
seq2  TTACTTCTGCAATAGCTAGAAAACACTC-AAATTC-ATAGGC-TCACTAG  95

seq1  GAATTCTGTATAAAAGAAGTAATTTAATTTTATCATTATTTTTCACAAAT  146
      | |||||||||||||||||| |||||   |||||||   |||||||||||
seq2  G-ATTCTGTATAAAAGAAGT-ATTTA--CTTATCAT--ATTTTCACAAAT  139

seq1  AAACATTCCATTAAAGCAATCTTCATTCACACTCACAAAAAGTTACTTTC  196
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -AACATTCCATTAAAGCAATC-TCATTCACACTCACAAAAAGTTACTTTC  187

seq1  TGTAAAAAACAGCCCTCCTGATCCTTTCTCTTAACATTTTTAT-CCAC-G  244
      |||||||||||||||||||||||| |||||||||||||||||| |||| |
seq2  TGTAAAAAACAGCCCTCCTGATCC-TTCTCTTAACATTTTTATCCCACGG  236

seq1  AATACATTCACCTAGACTAAACATTTAAATGTGGCCATATCACTGAGACA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTCACCTAGACTAAACATTTAAATGTGGCCATATCACTGAGACA  286

seq1  AGGTCCCAATCAAAATACACTTAAAGACAGCTAAGTCCTAGGGTGAAATT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCAATCAAAATACACTTAAAGACAGCTAAGTCCTAGGGTGAAATT  336

seq1  ATATTCAAGACAACTGTGAAACTCGTACTTCTTCTCCTCCTATTAGTGAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAAGACAACTGTGAAACTCGTACTTCTTCTCCTCCTATTAGTGAA  386

seq1  AATTCACAGGTCTTAAATTACCATCATGTTCTGCTACCCCAGGCTCTACC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGGTCTTAAATTACCATCATGTTCTGCTACCCCAGGCTCTACC  436

seq1  AAGAAACAATTGTTTATTTGGTTACCTCATTTCCATGCACCATGAGATGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAATTGTTTATTTGGTTACCTCATTTCCATGCACCATGAGATGG  486

seq1  TGTGTGGTCACTAAAGCTTTAAATACCACCACCCAGCTACTGTTTGTCGC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGTCACTAAAGCTTTAAATACCACCACCCAGCTACTGTTTGTCGC  536

seq1  CCGCTCAAAGAGGGTGTCGGCCATCTGAGGGATATTGACATTGGTCTCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCAAAGAGGGTGTCGGCCATCTGAGGGATATTGACATTGGTCTCAT  586

seq1  TGGTAGCCTGGATCAAATCTATGAAAATAGAAGATATCCAGTAACTATTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCCTGGATCAAATCTATGAAAATAGAAGATATCCAGTAACTATTA  636

seq1  TATATAAAATTCACCTCAAACAATAAGCTCATTACTAAAGCATGACTTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAATTCACCTCAAACAATAAGCTCATTACTAAAGCATGACTTCA  686

seq1  AAATTAAGTAGACAAGAGTTAAGTGAAAAAAATTATACTGTAGTATTCTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGTAGACAAGAGTTAAGTGAAAAAAATTATACTGTAGTATTCTT  736

seq1  ACATATGAACACATTAATATATGTATTTTAACCAATATATTTATTTACTC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAACACATTAATATATGTATTTTAACCAATATATTTATTTACTC  786

seq1  TTGAACTTTTTCTTTTTCAGTTGAATTGAAACTGTATTTGTGCTGGTTAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTTTCTTTTTCAGTTGAATTGAAACTGTATTTGTGCTGGTTAA  836

seq1  TTTTTGTCAACTTGACACAAACTCAGGTCATCTGGGATGAGAAAACCTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCAACTTGACACAAACTCAGGTCATCTGGGATGAGAAAACCTTA  886

seq1  GTTGAGGAAATGTTTCCATGAGACTGGAGACTGGCCTGTAGGGAAGTCTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGAAATGTTTCCATGAGACTGGAGACTGGCCTGTAGGGAAGTCTT  936

seq1  GCAGAGCATTATTTTGATTAATGACTGATGTGGGAGGACCCAGCCCACTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCATTATTTTGATTAATGACTGATGTGGGAGGACCCAGCCCACTG  986

seq1  TGGGCAGCACCATCTCTGGGCAGGTCACCTTGGGTGTGTAAGAAAGCAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCACCATCTCTGGGCAGGTCACCTTGGGTGTGTAAGAAAGCAAA  1036

seq1  TTGAGCAAGCAAGGCAGAGAGTGAGTGTCTCTCCTCACTAGCCTCTACCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAAGCAAGGCAGAGAGTGAGTGTCTCTCCTCACTAGCCTCTACCT  1086

seq1  CAGCTTCTGAATCCAGCCTGGAATTC  1120
      ||||||||||||||||||||||||||
seq2  CAGCTTCTGAATCCAGCCTGGAATTC  1112