BAC Information

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BAC

Clone NameB6Ng01-272H23
Chromosome9 (Build37)
Map Location 116,879,131 - 117,047,709
singlet/doubletdoublet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneLOC665840, LOC100039650, LOC100039681, Azi2, 2010110K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272H23.bB6Ng01-272H23.g
ACCGA074309GA074310
length877482
definitionB6Ng01-272H23.b B6Ng01-272H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,879,131 - 116,880,000)(117,047,227 - 117,047,709)
sequence
gaattcacatgcattcagagaagctgtctgagtgcctatggaagttccct
tagcttctcagattcagctgaaacccaagacttcagttaatttagtcatc
tttaaatgcatgctcagagatgagcatgataggtggactctcttccaagt
agagcatactcttatgttttcaaacatgtcacccttccgcttaaatttga
aaatgaatggtcgaagccacaaaacttggcttcccccccagtaatctatt
gaagtgtaatttcttccacccttgtccctgctttcatgtttgtgcactgg
agacacaaacaaccctgttttgttacaaagttcaaattagccctacatta
atacatcgggggggggggggctatcgtttatgtgaagaagcaggtagccc
atgtggaatgattatacaataaacgtattatgcaaatcccagcaaacatt
tcgtgcatactggataaagaatcaaattaaagtctcataaccctcggaaa
attaaagttagcaagcaccgtggttcacttgcccttgaacacaaaagctg
ctaagggcaggcacgtccccgtcatttccacaaaactgaaccgttctgaa
aatttcagattaaaataagaaatacctggggagccataaagatcagcgat
ttttttataggaataatttggagcctcaattttaaagtgttatgtgttag
aaagaatgggagtacctccgtgtcatattttaaaactaatattccagata
acccagccagcagggacaccaaaagtgaactacaggaaaggtatcagaga
agttggaaggagtagggctttgtgggatcagcagagggacttctgggaat
cagacagggggagagtggtggctggaa
gaattctttgtccttaactctttcagaaaaaagaactaacagtggaattt
atttttctatcagtacttactacccagatctatgtttatatattttggtg
tcaaaccaaggtttattgttttcatgggggagcatgtgtttagaaattgc
cagcccctgtcagtgtggcgtgtcttaggtaaggaagagagagtagggtt
gagtctctctgtctctgtgtgtctctccatatttctgtgtcctctctctc
tctctctctctctctctctctctctctctctctcactctctctctctctg
tacctcatcagtaaactattagttaactcttcaaccacctgtttcatttg
tcacgcgttggagagtatccgtctgtcttagtgataatacacccaaggtg
tacctaaaaacctataaactgatgtggaagggagaccttattgctttgga
gtgacaactgggtagatccagagagagttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116879131_116880000
seq2: B6Ng01-272H23.b_44_919

seq1  GAATTCACATGCATTCAGAGAAGCTGTCTGAGTGCCTATGGAAGTTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCATTCAGAGAAGCTGTCTGAGTGCCTATGGAAGTTCCCT  50

seq1  TAGCTTCTCAGATTCAGCTGAAACCCAAGACTTCAGTTAATTTAGTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTCTCAGATTCAGCTGAAACCCAAGACTTCAGTTAATTTAGTCATC  100

seq1  TTTAAATGCATGCTCAGAGATGAGCATGATAGGTGGACTCTCTTCCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGCATGCTCAGAGATGAGCATGATAGGTGGACTCTCTTCCAAGT  150

seq1  AGAGCATACTCTTATGTTTTCAAACATGTCACCCTTCCGCTTAAATTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATACTCTTATGTTTTCAAACATGTCACCCTTCCGCTTAAATTTGA  200

seq1  AAATGAATGGTCGAAGCCACAAAACTTGGCTTCCCCCCCAGTAATCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATGGTCGAAGCCACAAAACTTGGCTTCCCCCCCAGTAATCTATT  250

seq1  GAAGTGTAATTTCTTCCACCCTTGTCCCTGCTTTCATGTTTGTGCACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTAATTTCTTCCACCCTTGTCCCTGCTTTCATGTTTGTGCACTGG  300

seq1  AGACACAAACAACCCTGTTTTGTTACAAAGTTCAAATTAGCCCTACATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACAAACAACCCTGTTTTGTTACAAAGTTCAAATTAGCCCTACATTA  350

seq1  ATACATCGGGGGGGGGGGGGCTATCGTTTATGTGAAGAAGCAGGTAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCGGGGGGGGGGGGGCTATCGTTTATGTGAAGAAGCAGGTAGCCC  400

seq1  ATGTGGAATGATTATACAATAAACGTATTATGCAAATCCCAGCAAACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAATGATTATACAATAAACGTATTATGCAAATCCCAGCAAACATT  450

seq1  TCGTGCATACTGGATAAAGAATCAAATTAAAGTCTCATAACCCTCGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCATACTGGATAAAGAATCAAATTAAAGTCTCATAACCCTCGGAAA  500

seq1  ATTAAAGTTAGCAAGCACCGTGGTTCACTTGCCCTTGAACACAAAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTTAGCAAGCACCGTGGTTCACTTGCCCTTGAACACAAAAGCTG  550

seq1  CTAAGGGCAGGCACGTCCCCGTCATTTCCACAAAACTGAACCGTTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGCAGGCACGTCCCCGTCATTTCCACAAAACTGAACCGTTCTGAA  600

seq1  AATTTCAGATTAAAATAAGAAATACCTGGGGAGCCATAAAGATCAGCGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGATTAAAATAAGAAATACCTGGGGAGCCATAAAGATCAGCGAT  650

seq1  TTTTTTATAGGAATAATTTGGAGCCTCAATTTTAAAGTGTTATGTGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATAGGAATAATTTGGAGCCTCAATTTTAAAGTGTTATGTGTTAG  700

seq1  AAAGAATGGGAGTACCTCCGTGTCATATTTTAAAACTAATATTCCAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGGGAGTACCTCCGTGTCATATTTTAAAACTAATATTCCAGATA  750

seq1  A-CCAGCCAGCAGGGACACCAAAAAGTGAACTACAGG-AAGGTATCAGAG  798
      | |||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  ACCCAGCCAGCAGGGACACC-AAAAGTGAACTACAGGAAAGGTATCAGAG  799

seq1  AAGT--GGAGGAGTAGGGC-TTGTGGGATCAGCAGAGGGAC-TCTGGG-A  843
      ||||  | ||||||||||| ||||||||||||||||||||| |||||| |
seq2  AAGTTGGAAGGAGTAGGGCTTTGTGGGATCAGCAGAGGGACTTCTGGGAA  849

seq1  TCAGACAGGGGGAGGAGTGG-GGCTGGA  870
      ||||||||||||| |||||| |||||||
seq2  TCAGACAGGGGGA-GAGTGGTGGCTGGA  876

seq1: chr9_117047227_117047709
seq2: B6Ng01-272H23.g_67_548 (reverse)

seq1  TTCAACTCACTCAGGAACAACCCAGTTGTGAAGCCAAAGCAATAAGGTCT  50
      |||||||| ||| ||| | |||||||||| |  |||||||||||||||||
seq2  TTCAACTCTCTCTGGATCTACCCAGTTGTCACTCCAAAGCAATAAGGTCT  50

seq1  CCTTTCCAAATCAGTTTCTAGGTTGTTAGGTACACCTTGGGTGGAAATAT  100
      || ||||| |||||||| |||||| ||||||||||||||||| | | |||
seq2  CCCTTCCACATCAGTTTATAGGTTTTTAGGTACACCTTGGGT-GTATTAT  99

seq1  TGCTAAGACAGCTGGATTCTCTCCACTGCGTGACAAATGAAACAGGTGGT  150
        |||||||||  |||| |||||||  |||||||||||||||||||||||
seq2  CACTAAGACAGACGGATACTCTCCAACGCGTGACAAATGAAACAGGTGGT  149

seq1  TGAAGAGTTGCCATGTGGTTTACTGATGAGGTAAGGGGAGAGAGAGAGAG  200
      |||||||||  |   | ||||||||||||||||  | ||||||||||| |
seq2  TGAAGAGTTAACTAATAGTTTACTGATGAGGTACAGAGAGAGAGAGAGTG  199

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGACACAGA  249

seq1  AATATGGAGAGACACACAGAGACAGAGAGACTCAACCCTACTCTCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAGAGACACACAGAGACAGAGAGACTCAACCCTACTCTCTCTTC  299

seq1  CTTACCTAAGACACGCCACACTGACAGGGGCTGGCAATTTCTAAACACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTAAGACACGCCACACTGACAGGGGCTGGCAATTTCTAAACACAT  349

seq1  GCTCCCCCATGAAAACAATAAACCTTGGTTTGACACCAAAATATATAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCCCATGAAAACAATAAACCTTGGTTTGACACCAAAATATATAAAC  399

seq1  ATAGATCTGGGTAGTAAGTACTGATAGAAAAATAAATTCCACTGTTAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTGGGTAGTAAGTACTGATAGAAAAATAAATTCCACTGTTAGTT  449

seq1  CTTTTTTCTGAAAGAGTTAAGGACAAAGAATTC  483
      |||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTGAAAGAGTTAAGGACAAAGAATTC  482