BAC Information

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BAC

Clone NameB6Ng01-272L16
Chromosome9 (Build37)
Map Location 27,701,573 - 27,702,681
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneGm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272L16.bB6Ng01-272L16.g
ACCGA074482GA074483
length1,1921,107
definitionB6Ng01-272L16.b B6Ng01-272L16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctaccttattttcaataatggctgtaacagttattcacttacc
aacagtgaatatatttctcccttttacaactttctcaccagtgtgttttg
tagaaaatggagcagtgtgagagagggttagccaagactgaaaaattata
taaaatcctactattttgtaagtgaattaaaaatagaattagaagagttt
taagagaggcaccctgaaagggtggatagtgctgttctctgaagccatag
atcattaaactgtgttggctgtgagatattgccttatgaattaatgatta
ggaagactaaagagttgcccaaaacaatacagattgctgctattgatttt
tttttttttggtagacaagaagaccctatcctgaagaaaccacatattta
gttgaaggacatagaaacatcaagctagaagtaagctgaaaaatttcctc
cctgctaactagttttcagtgttgaaagttattgtgcagagtatgtggga
tttgagggcgggagtcattttcagtcttacctggctgtgagtcctgtaag
ttacaataacaacctgtcaggcaagatgtacccacacatgcaatagtggt
gttactgttatggggtaaccaccttattcatgattggattttaagcctac
gttatgggaggcacagtatagaacaatgccttgtgagacttgtcaatagc
ccatagataggtagatcatcggccctaggaaaggactcaccactgctata
gtactgttttgctctatggacatgttgtcaaattgccttctatccactta
tatttataatggcagactagtgctgctctcagcattgctcagagagcttc
tgtttgaaagggggtaccagttaatacaaaaacttctaacctagtaaaag
tgctgaatataagtgactcttaaatactcagctttaaacttgacatctat
accaccccacctcctccaagggtttccatgagaaggaggcagaaagactt
ttattccaagaaagaaaaggatgctgtgaaatctgtctttctgttaccat
ggctgtgtaccaatgactcacagcagcagtggcttacctattggtgagac
tataaaagctgaaaccatcataatccatccatggacgggaatgtagcatc
tagctctatgagaggcataaacagttacatggctcttgcaga
gaattccatggaactggagttctgtcaactagatgctgagaaccaattca
tgtccactgtaagaaccataaatgagcttaaccacccagacatcatttta
ggcccagagtttttacttttaataactctattagatatctactataccta
ttttaaagatggggcactcaatatttcctatttgtaaatatcataaataa
cattttgaatcagtgtctttttgtctgcatatttatttatcttacaaata
atctaaagttttagaagtgaaactggcttaagtcatgagcttgctgaaga
taaagacattgatggccattggtgttctagggagattttactgattaaga
ctgttgattgtgactttagtgaaactctggcaaattaaatgttgatacta
gttgcagagttcaatagcttctgcatctattctaaaggatttatttttaa
aaaactgattaaattctttacaaatttattgtcacattacatatgcacac
atgtatttgaatatttttgcatgtcatattaggtaggtgtttctgtgtgt
ttgagaggctcatgattgatgccccgtgccttggcgagttctctatcatt
gagctaaagccccaatccttcatttcttatcatcactaaattttctcttt
gtgtttggttggtttcccagaaaggtgttgacttgtatgttttttttagc
atgcacaggtggcagtagatttatatgacatatttatgtcatgtatttct
taaatatagttttactattgtgttaatgactttctgcaatctttgatagg
atatcaatcatgtgtgcatgtttttctttttactttaatttttattatac
ttcatttttttgttaacacattgtttacttatggtgttttataagctgtt
caggctgattcaaaggcatagtattccctgttcatatttattggttgtct
ttatttaccctaacctgtgccacctctgctaacccttaatctacatatag
ctactttatggcaggtccattatatctcaatagctattgacatggaatcg
taatatccgtcaatgaatggatgagtaaagaaatactggtatgccattct
ttagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27701573_27702681
seq2: B6Ng01-272L16.g_64_1170

seq1  GAATTCCATGGAACTGGAGTTCTGTCAACTAGATGCTGAGAACCAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAACTGGAGTTCTGTCAACTAGATGCTGAGAACCAATTCA  50

seq1  TGTCCACTGTAAGAACCATAAATGAGCTTAACCACCCAGACATCATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACTGTAAGAACCATAAATGAGCTTAACCACCCAGACATCATTTTA  100

seq1  GGCCCAGAGTTTTTACTTTTAATAACTCTATTAGATATCTACTATACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAGTTTTTACTTTTAATAACTCTATTAGATATCTACTATACCTA  150

seq1  TTTTAAAGATGGGGCACTCAATATTTCCTATTTGTAAATATCATAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGATGGGGCACTCAATATTTCCTATTTGTAAATATCATAAATAA  200

seq1  CATTTTGAATCAGTGTCTTTTTGTCTGCATATTTATTTATCTTACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAATCAGTGTCTTTTTGTCTGCATATTTATTTATCTTACAAATA  250

seq1  ATCTAAAGTTTTAGAAGTGAAACTGGCTTAAGTCATGAGCTTGCTGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAGTTTTAGAAGTGAAACTGGCTTAAGTCATGAGCTTGCTGAAGA  300

seq1  TAAAGACATTGATGGCCATTGGTGTTCTAGGGAGATTTTACTGATTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACATTGATGGCCATTGGTGTTCTAGGGAGATTTTACTGATTAAGA  350

seq1  CTGTTGATTGTGACTTTAGTGAAACTCTGGCAAATTAAATGTTGATACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATTGTGACTTTAGTGAAACTCTGGCAAATTAAATGTTGATACTA  400

seq1  GTTGCAGAGTTCAATAGCTTCTGCATCTATTCTAAAGGATTTATTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGAGTTCAATAGCTTCTGCATCTATTCTAAAGGATTTATTTTTAA  450

seq1  AAAACTGATTAAATTCTTTACAAATTTATTGTCACATTACATATGCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGATTAAATTCTTTACAAATTTATTGTCACATTACATATGCACAC  500

seq1  ATGTATTTGAATATTTTTGCATGTCATATTAGGTAGGTGTTTCTGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGAATATTTTTGCATGTCATATTAGGTAGGTGTTTCTGTGTGT  550

seq1  TTGAGAGGCTCATGATTGATGCCCCGTGCCTTGGCGAGTTCTCTATCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGCTCATGATTGATGCCCCGTGCCTTGGCGAGTTCTCTATCATT  600

seq1  GAGCTAAAGCCCCAATCCTTCATTTCTTATCATCACTAAATTTTCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAAGCCCCAATCCTTCATTTCTTATCATCACTAAATTTTCTCTTT  650

seq1  GTGTTTGGTTGGTTTCCCAGAAAGGTGTTGACTTGTATGTTTTTTTTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGTTGGTTTCCCAGAAAGGTGTTGACTTGTATGTTTTTTTTAGC  700

seq1  ATGCACAGGTGGCAGTAGATTTATATGACATATTTATGTCATGTATTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGGTGGCAGTAGATTTATATGACATATTTATGTCATGTATTTCT  750

seq1  TAAATATAGTTTTACTATTGTGTTAATGACTTTCTGCAATCTTTGATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAGTTTTACTATTGTGTTAATGACTTTCTGCAATCTTTGATAGG  800

seq1  ATATCAATCATGTGTGCATGTTTTTCTTTTTACTTTAATTTTTATTATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATCATGTGTGCATGTTTTTCTTTTTACTTTAATTTTTATTATAC  850

seq1  TTCA-TTTTTTGTTAACACATTGTTTACTTATGGTGTTTTATAAGCTGTT  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTTTGTTAACACATTGTTTACTTATGGTGTTTTATAAGCTGTT  900

seq1  CAGGCTGATTCAAAGGCATAGTATTCCCTGTTCATATTTATTGGTTGTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGATTCAAAGGCATAGTATTCCCTGTTCATATTTATTGGTTGTCT  950

seq1  TTATTTACCCTAACCTGTGCCAACCTCTGCTAACCTTTAATCTACATATA  999
      ||||||||||||||||||||| ||||||||||||| ||||||||||||||
seq2  TTATTTACCCTAACCTGTGCC-ACCTCTGCTAACCCTTAATCTACATATA  999

seq1  GCTTACTTTATTGGCAGGTCCATTATATTCTCAATAGCTA-TGACATGGA  1048
      || ||||||| |||||||||||||||| |||||||||||| |||||||||
seq2  GC-TACTTTA-TGGCAGGTCCATTATA-TCTCAATAGCTATTGACATGGA  1046

seq1  ATCGT-ATATCCGTCAATGAATGAATGAGTAAAGAAAATACTTGGTATG-  1096
      ||||| ||||||||||||||||| |||||||||| |||||| ||||||| 
seq2  ATCGTAATATCCGTCAATGAATGGATGAGTAAAG-AAATAC-TGGTATGC  1094

seq1  CATCTTTAAGAAG  1109
      |||  || |||||
seq2  CATTCTTTAGAAG  1107