BAC Information

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BAC

Clone NameB6Ng01-272M03
Chromosome9 (Build37)
Map Location 64,868,520 - 65,009,597
singlet/doubletdoublet
Overlap genePtplad1, Dpp8, Nope, Punc
Upstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik
Downstream geneParp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272M03.bB6Ng01-272M03.g
ACCGA074503GA074504
length9171,118
definitionB6Ng01-272M03.b B6Ng01-272M03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,868,520 - 64,869,437)(65,008,470 - 65,009,597)
sequence
gaattcagacaggtatctaactgcgagcaagaaacagttcagaggaatga
agattacaataccatggatgtcaaggagactagggaaagaacattccaga
ccaaaaccactcgcttcacacagaatactggatggtctggttagagacat
gggaagttcccagggatttgatttgctcacattaataggtaaacgtggtg
aaatgaatacttaatgtcacacgataatttctttacgcaacttgctaagg
ctgagctcgcagccttaaagagaggatggaaatcatttccttggtgagcg
gaggtgtggtgtagatttctatcactgaacggttggggggttgccccccg
cccagcccagcgacgggccttgagaaggtcaatgggccgcccggactaaa
cctcagaggccagcgctgacgtcctgctaccgcacaacaggccactgtca
agccgcactttagacccacggagctcatcccacaattcagagggccttag
gcaacccgaaggccagccgccggcttccaggactctgctgaggctcccca
gggcgcctaccaggaacaaaggggataccggggccaagcgcagaacgccg
gacggcacctgcagcccctaagggagaccggggcgctccactcgcggttc
ctgctggcgcactgcaggagcgcaaacgcacagggcggccgacggggacc
ggggggcccccgatcctgcgcgcagcccgcagcccggcctttacctgcac
gtcactcagctccacgcgcagatacagctcgcggtgtcgctgagcccagt
agacatgcggcgtcagcacttgagtctccatggcccacgctgtccggggg
agcggggaggctcggcttgctgcgcctcgtacctcgtctgtgagccgctg
gagcttagcaaaacgca
gaattctccctgcatatgcagaattttctaatgctcctgtcattgcaaca
tcgaaggctctttgctggcagccacagccaaccccttaattggagtaacc
atctactttgagaaatagcattcaagaacagagggcttaggatgtagctc
agataatagcacgctcacacaaagccccaaggtcaaaccccaggactgca
taagcctagcacccaggaggtaggaggatcagaagtcgaaggttattctc
agctatggagtgaggtccaggccagcctgggctgtatgagatcctgtctc
aggagagaatggagcaacattggaaagagtaaacagccaccaagcagttc
cttgtgtttaacattattaccaagtactagctgtaatcacaaggggaaag
catgcttgcacattttaagggtagctcattgttttcttcactcggtttcg
aagcaaagtagaaccctggtcctagcccagatgtgatcacaatgttttcc
ttcataaccctaagtaaatctttgtcacggattcctatttcttctgccta
aggctgtataggaccttttaagcctgcttgggttcacaacacctgctgct
gtgaactacttatgtttgaaagatctgcctagttagtcaatttagagaac
ggcagaacaaaacaaagagataaagcagagtcgctttgtatagggtagag
gcaggcggtccggagctgcccccacccgacccatcccccaccccccttcc
cacctctagttcttgagccccttctggagagccacaaggctctaagatag
gatgtttcacatggttttcctatagagaagaagaatttatcccaaggaaa
cagctattagtagcagaccaaagaccatttttaatttgatagaggctact
accttcactttgtgcatgtgtgcatgcatgggcttgtgtgtgcacatgca
tgtgcaaggctacaggttgaatgtccaggtgtttcctcagttgtctcaat
tgatttaagtaattttaataatttattctctatgtgtgtgtgaagaggag
aggacgtacagaacgacagacagagtatgcaccatgccgttgaagtcaaa
aaaatgtgtctgatcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64868520_64869437
seq2: B6Ng01-272M03.b_44_960

seq1  GAATTCAGACAGGTATCTAACTGCGAGCAAGAAACAGTTCAGAGGAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACAGGTATCTAACTGCGAGCAAGAAACAGTTCAGAGGAATGA  50

seq1  AGATTACAATACCATGGATGTCAAGGAGACTAGGGAAAGAACATTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACAATACCATGGATGTCAAGGAGACTAGGGAAAGAACATTCCAGA  100

seq1  CCAAAACCACTCGCTTCACACAGAATACTGGATGGTCTGGTTAGAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCACTCGCTTCACACAGAATACTGGATGGTCTGGTTAGAGACAT  150

seq1  GGGAAGTTCCCAGGGATTTGATTTGCTCACATTAATAGGTAAACGTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTCCCAGGGATTTGATTTGCTCACATTAATAGGTAAACGTGGTG  200

seq1  AAATGAATACTTAATGTCACACGATAATTTCTTTACGCAACTTGCTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATACTTAATGTCACACGATAATTTCTTTACGCAACTTGCTAAGG  250

seq1  CTGAGCTCGCAGCCTTAAAGAGAGGATGGAAATCATTTCCTTGGTGAGCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCGCAGCCTTAAAGAGAGGATGGAAATCATTTCCTTGGTGAGCG  300

seq1  GAGGTGTGGTGTAGATTTCTATCACTGAACGGTTGGGGGGTTGCCCCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGGTGTAGATTTCTATCACTGAACGGTTGGGGGGTTGCCCCCCG  350

seq1  CCCAGCCCAGCGACGGGCCTTGAGAAGGTCAATGGGCCGCCCGGACTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCAGCGACGGGCCTTGAGAAGGTCAATGGGCCGCCCGGACTAAA  400

seq1  CCTCAGAGGCCAGCGCTGACGTCCTGCTACCGCACAACAGGCCACTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGGCCAGCGCTGACGTCCTGCTACCGCACAACAGGCCACTGTCA  450

seq1  AGCCGCACTTTAGACCCACGGAGCTCATCCCACAATTCAGAGGGCCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCACTTTAGACCCACGGAGCTCATCCCACAATTCAGAGGGCCTTAG  500

seq1  GCAACCCGAAGGCCAGCCGCCGGCTTCCAGGACTCTGCTGAGGCTCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCGAAGGCCAGCCGCCGGCTTCCAGGACTCTGCTGAGGCTCCCCA  550

seq1  GGGCGCCTACCAGGAACAAAGGGGATACCGGGGCCAAGCGCAGAACGCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCCTACCAGGAACAAAGGGGATACCGGGGCCAAGCGCAGAACGCCG  600

seq1  GACGGCACCTGCAGCCCCTAAGGGAGACCGGGGCGCTCCACTCGCGGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGCACCTGCAGCCCCTAAGGGAGACCGGGGCGCTCCACTCGCGGTTC  650

seq1  CTGCTGGCGCACTGCAGGAGCGCAAACGCACAGGGCGGCCGACGGGGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCGCACTGCAGGAGCGCAAACGCACAGGGCGGCCGACGGGGACC  700

seq1  GGGGGGCCCCCGATCCTGCGCGCAGCCCGCAGCCCGGCCTTTACCTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCCCCCGATCCTGCGCGCAGCCCGCAGCCCGGCCTTTACCTGCAC  750

seq1  GTCACTCAGCTCCACGCGCAGATACAGCTCGCGGTGTCGCTGAGCCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCAGCTCCACGCGCAGATACAGCTCGCGGTGTCGCTGAGCCCAGT  800

seq1  AGACATGCGGCGTCAGCACTTGAGTCTCCATGGCCCACGCTGTCCGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCGGCGTCAGCACTTGAGTCTCCATGGCCCACGCTGTCCGGGGG  850

seq1  AGCGGGGAGGCTCGGCTTGCTGCGCCTCGTTACCTCGGCCTGTGAGCCGC  900
      ||||||||||||||||||||||||||||| |||||| | |||||||||||
seq2  AGCGGGGAGGCTCGGCTTGCTGCGCCTCG-TACCTC-GTCTGTGAGCCGC  898

seq1  TGGAGC-TAGCAGAACGCA  918
      |||||| ||||| ||||||
seq2  TGGAGCTTAGCAAAACGCA  917

seq1: chr9_65008470_65009597
seq2: B6Ng01-272M03.g_66_1183 (reverse)

seq1  GGGGATCAGACACATTCTTCTGGCCTCCAACGGCAT-GTGCATACCTCTG  49
      |||||||||||||||| || | | || ||||||||| ||||||| |||||
seq2  GGGGATCAGACACATT-TTTTTGACTTCAACGGCATGGTGCATA-CTCTG  48

seq1  TCTGTCTGTCTGTCTGTCTCTCTTTCTCTCTCACACACACATAGAGGAAT  99
      ||||||  |||||  ||| ||| | |||| ||||||||||||||| ||||
seq2  TCTGTCGTTCTGTACGTC-CTC-TCCTCT-TCACACACACATAGA-GAAT  94

seq1  AAAAATATTAAAAAATAACTTAAAAATAAATTGAAGAACAACTGAGGAAA  149
       ||| ||||  ||||| ||||  |||| ||||||   |||||||||| ||
seq2  -AAATTATT--AAAATTACTT--AAATCAATTGA--GACAACTGAGG-AA  136

seq1  ACACCT-GACATTCAACCTGTAGCC-TGCACATGCATGTGCACACACAAG  197
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  ACACCTGGACATTCAACCTGTAGCCTTGCACATGCATGTGCACACACAAG  186

seq1  CCCATGCATGCACACATGCACAAAGTGAAGGTAGTAGCCTCTATCAAATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCATGCACACATGCACAAAGTGAAGGTAGTAGCCTCTATCAAATT  236

seq1  AAAAATGGTCTTTGGTCTGCTACTAATAGCTGTTTCCTT-GGATAAATTC  296
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAATGGTCTTTGGTCTGCTACTAATAGCTGTTTCCTTGGGATAAATTC  286

seq1  TTCTTCTCTATAGGAAAACCATGTGAAACATCCTATCTTAGAGCCTTGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCTATAGGAAAACCATGTGAAACATCCTATCTTAGAGCCTTGTG  336

seq1  GCTCTCCAGAAGGGGCTCAAGAACTAGAGGTGGGAAGGGGGGTGGGGGAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCAGAAGGGGCTCAAGAACTAGAGGTGGGAAGGGGGGTGGGGGAT  386

seq1  GGGTCGGGTGGGGGCAGCTCCGGACCGCCTGCCTCTACCCTATACAAAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCGGGTGGGGGCAGCTCCGGACCGCCTGCCTCTACCCTATACAAAGC  436

seq1  GACTCTGCTTTATCTCTTTGTTTTGTTCTGCCGTTCTCTAAATTGACTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCTTTATCTCTTTGTTTTGTTCTGCCGTTCTCTAAATTGACTAA  486

seq1  CTAGGCAGATCTTTCAAACATAAGTAGTTCACAGCAGCAGGTGTTGTGAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAGATCTTTCAAACATAAGTAGTTCACAGCAGCAGGTGTTGTGAA  536

seq1  CCCAAGCAGGCTTAAAAGGTCCTATACAGCCTTAGGCAGAAGAAATAGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCAGGCTTAAAAGGTCCTATACAGCCTTAGGCAGAAGAAATAGGA  586

seq1  ATCCGTGACAAAGATTTACTTAGGGTTATGAAGGAAAACATTGTGATCAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTGACAAAGATTTACTTAGGGTTATGAAGGAAAACATTGTGATCAC  636

seq1  ATCTGGGCTAGGACCAGGGTTCTACTTTGCTTCGAAACCGAGTGAAGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGCTAGGACCAGGGTTCTACTTTGCTTCGAAACCGAGTGAAGAAA  686

seq1  ACAATGAGCTACCCTTAAAATGTGCAAGCATGCTTTCCCCTTGTGATTAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGCTACCCTTAAAATGTGCAAGCATGCTTTCCCCTTGTGATTAC  736

seq1  AGCTAGTACTTGGTAATAATGTTAAACACAAGGAACTGCTTGGTGGCTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTACTTGGTAATAATGTTAAACACAAGGAACTGCTTGGTGGCTGT  786

seq1  TTACTCTTTCCAATGTTGCTCCATTCTCTCCTGAGACAGGATCTCATACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTTCCAATGTTGCTCCATTCTCTCCTGAGACAGGATCTCATACA  836

seq1  GCCCAGGCTGGCCTGGACCTCACTCCATAGCTGAGAATAACCTTCGACTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCTGGCCTGGACCTCACTCCATAGCTGAGAATAACCTTCGACTT  886

seq1  CTGATCCTCCTACCTCCTGGGTGCTAGGCTTATGCAGTCCTGGGGTTTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTCCTACCTCCTGGGTGCTAGGCTTATGCAGTCCTGGGGTTTGA  936

seq1  CCTTGGGGCTTTGTGTGAGCGTGCTATTATCTGAGCTACATCCTAAGCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGCTTTGTGTGAGCGTGCTATTATCTGAGCTACATCCTAAGCCC  986

seq1  TCTGTTCTTGAATGCTATTTCTCAAAGTAGATGGTTACTCCAATTAAGGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTGAATGCTATTTCTCAAAGTAGATGGTTACTCCAATTAAGGG  1036

seq1  GTTGGCTGTGGCTGCCAGCAAAGAGCCTTCGATGTTGCAATGACAGGAGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTGTGGCTGCCAGCAAAGAGCCTTCGATGTTGCAATGACAGGAGC  1086

seq1  ATTAGAAAATTCTGCATATGCAGGGAGAATTC  1128
      ||||||||||||||||||||||||||||||||
seq2  ATTAGAAAATTCTGCATATGCAGGGAGAATTC  1118