BAC Information

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BAC

Clone NameB6Ng01-273D09
Chromosome9 (Build37)
Map Location 109,627,468 - 109,628,160
singlet/doubletsinglet
Overlap geneEG382109
Upstream genePrkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627
Downstream gene1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273D09.bB6Ng01-273D09.g
ACCGA074841GA074842
length482696
definitionB6Ng01-273D09.b B6Ng01-273D09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aaaagagaacagtgaggagaggtatatgtgaaggtttagaggaggagggg
ggacaggggaaggtttattattttctttaattacatttcaaatgttaccc
cctttcctagtttccccactgaaactccctacgtgctcccccatctccct
gtttaaaacctacccactcccacttcctggctccagaattgccctatact
ggggcatagaactttcacagcaccaagggcctctcctcccattgatgacc
aacaagtccatcctctgctatatatgccgctagagtcatgagtcccaaca
tgtgttttccttggttggtggtttagtcccagggagccctgggggtactg
gttagttcatgttgttgttcctcctatggggctgcaaaacccttcagctc
cttgggtcctttctctagctcctccattggggaccctgtgctctgtccaa
tggatggctgcaagcatccacttctgtatttg
gaattcctgtcaaggtctcagtttattaggctgaaacaccaggttttaag
cacacagcaaggggaatagggaggagttgagtgggaattaacaaagaaca
aagaagggggcatctggggacatgaaggccgaattcaggctgcaggcggc
aggaggcactctgagtcttatctccggaatgtagattcctccttaacagc
cttgggtgtcaggctgagctcagcatgtaactcatgtccttagaagtctt
gggagtctggaagagataaggaagaggggactataattcatctttttaca
gcctcaagtgccaggaagggaacagggaggagggggtgatgactggctcc
ttagcacaagaccattcgacttgttagggtgggaaactgtgaaaggccta
ctttcttacagtatggtctccaacctctctctctctctctctctctcttt
ctctctctctctctctctctctctctcacacacacacacacaaacacagt
tacctactgagtcatcccttagatctagagagtcttactccatggaatca
gtgcagatactctgagaggcaggctggtcacagctctgggtctcaatact
ggacttgaagacacagtggtgtatctcagagcatatatcactgcttcttt
ccatgcttaatcttttcccccccgaacctggtgccgctgctctgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109627468_109628160
seq2: B6Ng01-273D09.g_64_759 (reverse)

seq1  ATCAGAGCAGCGGCACCAGGTCAGTGGGG--AAAGATTAAGCATGG-AAG  47
      |||||||||||||||||||||  | ||||  ||||||||||||||| |||
seq2  ATCAGAGCAGCGGCACCAGGTTCGGGGGGGAAAAGATTAAGCATGGAAAG  50

seq1  AAGCAGTGTTATCTGCTCTGAGATACACCACTGTGTCTTCAAGTCCAGTA  97
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGATATATGCTCTGAGATACACCACTGTGTCTTCAAGTCCAGTA  100

seq1  TTGAGACCCAGAGCTGTGACCAGCCTGCCTCTCAGAGTATCTGCACTGAT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACCCAGAGCTGTGACCAGCCTGCCTCTCAGAGTATCTGCACTGAT  150

seq1  TCCATGGAGTAAGACTCTCTAGATCTAAGGGATGACTCAGTAGGTAACTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGAGTAAGACTCTCTAGATCTAAGGGATGACTCAGTAGGTAACTG  200

seq1  TGTTTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAG  250

seq1  AGAGAGAGAGAGAGAGAGAGAGGTTGGAGACCATACTGTAAGAAAGTAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGGTTGGAGACCATACTGTAAGAAAGTAGG  300

seq1  CCTTTCACAGTTTCCCACCCTAACAAGTCGAATGGTCTTGTGCTAAGGAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCACAGTTTCCCACCCTAACAAGTCGAATGGTCTTGTGCTAAGGAG  350

seq1  CCAGTCATCACCCCCTCCTCCCTGTTCCCTTCCTGGCACTTGAGGCTGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCATCACCCCCTCCTCCCTGTTCCCTTCCTGGCACTTGAGGCTGTA  400

seq1  AAAAGATGAATTATAGTCCCCTCTTCCTTATCTCTTCCAGACTCCCAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATGAATTATAGTCCCCTCTTCCTTATCTCTTCCAGACTCCCAAGA  450

seq1  CTTCTAAGGACATGAGTTACATGCTGAGCTCAGCCTGACACCCAAGGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGGACATGAGTTACATGCTGAGCTCAGCCTGACACCCAAGGCTG  500

seq1  TTAAGGAGGAATCTACATTCCGGAGATAAGACTCAGAGTGCCTCCTGCCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAGGAATCTACATTCCGGAGATAAGACTCAGAGTGCCTCCTGCCG  550

seq1  CCTGCAGCCTGAATTCGGCCTTCATGTCCCCAGATGCCCCCTTCTTTGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCTGAATTCGGCCTTCATGTCCCCAGATGCCCCCTTCTTTGTT  600

seq1  CTTTGTTAATTCCCACTCAACTCCTCCCTATTCCCCTTGCTGTGTGCTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAATTCCCACTCAACTCCTCCCTATTCCCCTTGCTGTGTGCTTA  650

seq1  AAACCTGGTGTTTCAGCCTAATAAACTGAGACCTTGACAGGAATTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGGTGTTTCAGCCTAATAAACTGAGACCTTGACAGGAATTC  696