BAC Information

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BAC

Clone NameB6Ng01-274E11
Chromosome9 (Build37)
Map Location 22,054,228 - 22,209,781
singlet/doubletdoublet
Overlap geneBC050092, Zfp810, LOC100041826, EG625603, Anln
Upstream geneAtg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809
Downstream gene9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805, Bmper
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274E11.bB6Ng01-274E11.g
ACCGA075621GA075622
length1,0641,127
definitionB6Ng01-274E11.b B6Ng01-274E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,208,720 - 22,209,781)(22,054,228 - 22,055,358)
sequence
gaattcttcttagaatgtggagaggataggagtgcatttatttcagctat
tgttattcacatgtcccgatggaaaaacatttttgccacatgtagcttgg
ccctgtgattggacgccttacttatataatgcttcttaaccctggaagta
taagctgtccaacactctgaataaagttggctattgcatgagactttggt
ccgcctcctttttaggacctgctttcctaggtataccaacaagagtgtta
gaggtgtataaagccatgcgaccacagcctgtgcagtttactctgaatgc
ttttgctggcatgctgaaccattgtgtctgctttctttataactcatcag
ttggtttgcttttcggtgctggctatccaattcagagctttgtgtgtact
tatgcaagcactctaccactgttttatgtcccagccccatttttattaca
tttcaaaatacccaaaatgtatatatttcatggatttttatatacaagtg
cctggtttaatgtttttagagtatggaaggaacttacggactagtaaggg
agattttaaatactgacatcattacaatatatgaatatatatgtgcataa
gtatatactgtatgtacatatctacatatatatatacaaattagagtaga
tattgaaagtatacttcctcttcagtgttcatcagtcttaaggatttggg
ggtttgggtagtgggatatgcctttaatgctagcccttcagaggcagaag
caggtagatctctaaccaacctggtttataatagaacgtgttctatgtca
gcctgagctacagactgagaacctatctcaaaacaaaaacaaaagtgaaa
aacttaggaattataaaattataaaaattataatgggttggagagatgac
tcaggggttaagagcgctggctgctgtacagaggacctggtttcattgcc
cagcattcacatcatctctagctctggttctagagacgataacattctga
cttgatgagcatgtggtatatgacataaactacacgcatgctacaaacat
tcgtagcacatgta
gaattctctgatgtctaattaggtgtgccttgtagtagaaagattttcca
cattccatgcactcaaaaggtctctcacctgtgtgagttcgctgatgtag
agtaagctgtgaccggcaggagaaagatttttggcattctgtacagtcat
aaggtttctcatttgtgtgagttctctggtgcagagtaaggtgtgataat
cggtagaaagctttcccacattcagtacatgcataaggcttcttgctcat
gtgaattttctgatgctgagtgaggtatgccttgtgggaaaaggctttcc
cacattctgtacattcatagggcttctcacctgtgtgaactatttgatgt
agagtaagttttccctgagagcagaaggctttcccacattccttacattt
atagggcctcttacgtatgcgagttcttggatgacttgtgagttttgagt
tgcaagagaaatcttttctgcactctgtacatccacaaagctttgtatct
ataagagttttctgacatcctggaacgtgtgagttatggaagatggtttt
cctgcattcttcatactcacggctcatcttccctctgtgaggtctctgac
ctttagtgagagttgccgtgtaatggagagctgtctgacgtgtaggagac
atttgaatcacagtgctctgggctttctgaaaaaatgtcttcccatgtgc
ttctctttcgcaggattttgacccttgatggatcttctgttgctccttta
gctctgccttgaaataaaagaatttgttatatttcttatatgtgaggaga
ggcctttttcctagaatatgttcttgaggttctgtgagctatgattttcc
acagtcacacatttctcatacatacacacttttgtctactgaatcaactt
ttataaaaaagaatcctgaatagattaatagtgggttagatacgtcccat
gatcccagtcttgggctacatatgtaagcatcacctattattgaatttac
tataacatctttaaaagagactttactatgtgtcagactattgagtcagt
gagaatgatagccttgatcaaatatactgaagcttggttgttatcgaaag
aagaatatgcaggatgccagagagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22208720_22209781
seq2: B6Ng01-274E11.b_31_1094 (reverse)

seq1  TACATGTG-TACGAATGTT--TTGCCTGCGTGTAG-TTATGT-ATATACC  45
      |||||||| ||||||||||  | || ||||||||| |||||| |||||||
seq2  TACATGTGCTACGAATGTTTGTAGCATGCGTGTAGTTTATGTCATATACC  50

seq1  ACATGCTCATTAAAGTCAGAATGTTATCGTCTCTAGAACCAGAGCTAGAG  95
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTCA-TCAAGTCAGAATGTTATCGTCTCTAGAACCAGAGCTAGAG  99

seq1  ATGGTTGTGAATGCTGGGCATTGAACCCAGGTCCTCTGTAACAGCAGCCA  145
      || | ||||||||||||||| |||| ||||||||||||| ||||||||||
seq2  AT-GATGTGAATGCTGGGCAATGAAACCAGGTCCTCTGT-ACAGCAGCCA  147

seq1  GCGCTCTTAACCCCTGAGTCATCTCTCCAACCCATTATAATTTTTATAAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCTTAACCCCTGAGTCATCTCTCCAACCCATTATAATTTTTATAAT  197

seq1  TTTATAATTCCTAAGTTTTTCACTTTTGTTTTTGTTTTGAGATAGGTTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATTCCTAAGTTTTTCACTTTTGTTTTTGTTTTGAGATAGGTTCT  247

seq1  CAGTCTGTAGCTCAGGCTGACATAGAACACGTTCTATTATAAACCAGGTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTAGCTCAGGCTGACATAGAACACGTTCTATTATAAACCAGGTT  297

seq1  GGTTAGAGATCTACCTGCTTCTGCCTCTGAAGGGCTAGCATTAAAGGCAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGAGATCTACCTGCTTCTGCCTCTGAAGGGCTAGCATTAAAGGCAT  347

seq1  ATCCCACTACCCAAACCCCCAAATCCTTAAGACTGATGAACACTGAAGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACTACCCAAACCCCCAAATCCTTAAGACTGATGAACACTGAAGAG  397

seq1  GAAGTATACTTTCAATATCTACTCTAATTTGTATATATATATGTAGATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATACTTTCAATATCTACTCTAATTTGTATATATATATGTAGATAT  447

seq1  GTACATACAGTATATACTTATGCACATATATATTCATATATTGTAATGAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATACAGTATATACTTATGCACATATATATTCATATATTGTAATGAT  497

seq1  GTCAGTATTTAAAATCTCCCTTACTAGTCCGTAAGTTCCTTCCATACTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATTTAAAATCTCCCTTACTAGTCCGTAAGTTCCTTCCATACTCT  547

seq1  AAAAACATTAAACCAGGCACTTGTATATAAAAATCCATGAAATATATACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTAAACCAGGCACTTGTATATAAAAATCCATGAAATATATACA  597

seq1  TTTTGGGTATTTTGAAATGTAATAAAAATGGGGCTGGGACATAAAACAGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGTATTTTGAAATGTAATAAAAATGGGGCTGGGACATAAAACAGT  647

seq1  GGTAGAGTGCTTGCATAAGTACACACAAAGCTCTGAATTGGATAGCCAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGTGCTTGCATAAGTACACACAAAGCTCTGAATTGGATAGCCAGC  697

seq1  ACCGAAAAGCAAACCAACTGATGAGTTATAAAGAAAGCAGACACAATGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAAAAGCAAACCAACTGATGAGTTATAAAGAAAGCAGACACAATGGT  747

seq1  TCAGCATGCCAGCAAAAGCATTCAGAGTAAACTGCACAGGCTGTGGTCGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGCCAGCAAAAGCATTCAGAGTAAACTGCACAGGCTGTGGTCGC  797

seq1  ATGGCTTTATACACCTCTAACACTCTTGTTGGTATACCTAGGAAAGCAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTTATACACCTCTAACACTCTTGTTGGTATACCTAGGAAAGCAGG  847

seq1  TCCTAAAAAGGAGGCGGACCAAAGTCTCATGCAATAGCCAACTTTATTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAAGGAGGCGGACCAAAGTCTCATGCAATAGCCAACTTTATTCA  897

seq1  GAGTGTTGGACAGCTTATACTTCCAGGGTTAAGAAGCATTATATAAGTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGGACAGCTTATACTTCCAGGGTTAAGAAGCATTATATAAGTAA  947

seq1  GGCGTCCAATCACAGGGCCAAGCTACATGTGGCAAAAATGTTTTTCCATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCCAATCACAGGGCCAAGCTACATGTGGCAAAAATGTTTTTCCATC  997

seq1  GGGACATGTGAATAACAATAGCTGAAATAAATGCACTCCTATCCTCTCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATGTGAATAACAATAGCTGAAATAAATGCACTCCTATCCTCTCCA  1047

seq1  CATTCTAAGAAGAATTC  1062
      |||||||||||||||||
seq2  CATTCTAAGAAGAATTC  1064

seq1: chr9_22054228_22055358
seq2: B6Ng01-274E11.g_66_1192

seq1  GAATTCTCTGATGTCTAATTAGGTGTGCCTTGTAGTAGAAAGATTTTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGTCTAATTAGGTGTGCCTTGTAGTAGAAAGATTTTCCA  50

seq1  CATTCCATGCACTCAAAAGGTCTCTCACCTGTGTGAGTTCGCTGATGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATGCACTCAAAAGGTCTCTCACCTGTGTGAGTTCGCTGATGTAG  100

seq1  AGTAAGCTGTGACCGGCAGGAGAAAGATTTTTGGCATTCTGTACAGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTGTGACCGGCAGGAGAAAGATTTTTGGCATTCTGTACAGTCAT  150

seq1  AAGGTTTCTCATTTGTGTGAGTTCTCTGGTGCAGAGTAAGGTGTGATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTCATTTGTGTGAGTTCTCTGGTGCAGAGTAAGGTGTGATAAT  200

seq1  CGGTAGAAAGCTTTCCCACATTCAGTACATGCATAAGGCTTCTTGCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGAAAGCTTTCCCACATTCAGTACATGCATAAGGCTTCTTGCTCAT  250

seq1  GTGAATTTTCTGATGCTGAGTGAGGTATGCCTTGTGGGAAAAGGCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTTCTGATGCTGAGTGAGGTATGCCTTGTGGGAAAAGGCTTTCC  300

seq1  CACATTCTGTACATTCATAGGGCTTCTCACCTGTGTGAACTATTTGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTGTACATTCATAGGGCTTCTCACCTGTGTGAACTATTTGATGT  350

seq1  AGAGTAAGTTTTCCCTGAGAGCAGAAGGCTTTCCCACATTCCTTACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGTTTTCCCTGAGAGCAGAAGGCTTTCCCACATTCCTTACATTT  400

seq1  ATAGGGCCTCTTACGTATGCGAGTTCTTGGATGACTTGTGAGTTTTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCCTCTTACGTATGCGAGTTCTTGGATGACTTGTGAGTTTTGAGT  450

seq1  TGCAAGAGAAATCTTTTCTGCACTCTGTACATCCACAAAGCTTTGTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAGAAATCTTTTCTGCACTCTGTACATCCACAAAGCTTTGTATCT  500

seq1  ATAAGAGTTTTCTGACATCCTGGAACGTGTGAGTTATGGAAGATGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTTTTCTGACATCCTGGAACGTGTGAGTTATGGAAGATGGTTTT  550

seq1  CCTGCATTCTTCATACTCACGGCTCATCTTCCCTCTGTGAGGTCTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTCTTCATACTCACGGCTCATCTTCCCTCTGTGAGGTCTCTGAC  600

seq1  CTTTAGTGAGAGTTGCCGTGTAATGGAGAGCTGTCTGACGTGTAGGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGAGAGTTGCCGTGTAATGGAGAGCTGTCTGACGTGTAGGAGAC  650

seq1  ATTTGAATCACAGTGCTCTGGGCTTTCTGAAAAAATGTCTTCCCATGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATCACAGTGCTCTGGGCTTTCTGAAAAAATGTCTTCCCATGTGC  700

seq1  TTCTCTTTCGCAGGATTTTGACCCTTGATGGATCTTCTGTTGCTCCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCGCAGGATTTTGACCCTTGATGGATCTTCTGTTGCTCCTTTA  750

seq1  GCTCTGCCTTGAAATAAAAGAATTTGTTATATTTCTTATATGTGAGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTTGAAATAAAAGAATTTGTTATATTTCTTATATGTGAGGAGA  800

seq1  GGCCTTTTTCCTAGAATATGTTCTTGAGGTTCTGTGAGCTATGATTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTTCCTAGAATATGTTCTTGAGGTTCTGTGAGCTATGATTTTCC  850

seq1  ACAGTCACACATTTCTCATACATACACACTTTTGTCTACTGAATCAACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACACATTTCTCATACATACACACTTTTGTCTACTGAATCAACTT  900

seq1  TTATAAAAAAGAATCCTGAATAGATTAATAGT-GGTTAGATAACGTCCCA  949
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  TTATAAAAAAGAATCCTGAATAGATTAATAGTGGGTTAGAT-ACGTCCCA  949

seq1  TGATCCCAGTCTTGGGCTACATATGTAAGCATCACCTTATTATTGAATTT  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGATCCCAGTCTTGGGCTACATATGTAAGCATCACC-TATTATTGAATTT  998

seq1  ACTATAACATCTTTAAAAGGAGACTTTACTATGTGTCAGACATATTGAGT  1049
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  ACTATAACATCTTTAAAA-GAGACTTTACTATGTGTCAGAC-TATTGAGT  1046

seq1  CAGTGAAGAATGATAGCCCTGGTCAAATATACTGAAGCTTTGTTGTTATG  1099
      ||||| |||||||||||| || |||||||||||||||||| |||||||| 
seq2  CAGTG-AGAATGATAGCCTTGATCAAATATACTGAAGCTTGGTTGTTATC  1095

seq1  GAAAAGAAG-ATATGCAGGATGCAAGAGAGATT  1131
      | ||||||| ||||||||||||| |||||||||
seq2  G-AAAGAAGAATATGCAGGATGCCAGAGAGATT  1127