BAC Information

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BAC

Clone NameB6Ng01-274J06
Chromosome9 (Build37)
Map Location 46,185,265 - 46,329,277
singlet/doubletdoublet
Overlap genenone
Upstream geneFxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13, 4931429L15Rik, LOC100042722
Downstream geneEG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274J06.bB6Ng01-274J06.g
ACCGA075842GA075843
length1,1541,052
definitionB6Ng01-274J06.b B6Ng01-274J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,328,159 - 46,329,277)(46,185,265 - 46,186,306)
sequence
gaattcatttggattaatctgtgaattcttttttggttctttttttttcc
ccctaggcataatttcactatgtggctaaacctggcttcaaacacatgat
ctcaagatcctcttacttggctaggcagtggtggcgcacgcctttaatcc
cggcacttgggaggcagaggcaggcggatttctgagttcaaggccagcct
ggtctacaaagtgagttccagaacagccagggctatacagagaaaccctg
tctcaaaaaaaaaaaaaaaaaaaaaaaaaaaacctcctactttaccctaa
agtgctgggttacaggtgtgtatcactgctgacctgtaaacctttacgtg
agtggaatccaggcctgaaaaggtgctaagatggtctccagcactccact
tccaggatgcaagtcatttcccactaagcaggcacatcacactggtcagt
ttgtcacctcccaggcctttacttcctcgcccatgaagcaaggcccaata
gagtgcccgcctcgtagggttgagcgagttgctttgttgcctgacagctg
agaggtaacctgttcactggctctaatcatgttcttctgggaagctttcc
agatccactgagtactgaccagcaagagttagatgtcagtgcccagggaa
ggagtctcagaccggttaggctgcatctgcaagcagagcccaaagctgag
gagaaaggctcactgtccttcaaacagctactctgcagtgaggaataact
tcagtgtgtgttagaaaccttgtagttgctgtgacaaaatacccaagtga
gtcgatgtataaagaggaaaggtttatttttgccttcactgtgtcgggag
gtcttcagtttcgtagttcaacttcttgttggattggggggcctgtggtg
aagagacttttgtgttaggagcatatgggtagagcagcctgccttctgcc
ttcaccctcatgtcagcctggggatgcaaagacaggagggagccaagggt
ttcaaattgttctcttcaagggaacatgccctttggtgaccttactatgg
cttcccaaccggggcctctacttcccgggagtatcctaccaccttccacc
acggacatcaagctaatattagcccgagctttcacaccatggagggctct
agga
gaattcaggtggtgggcggggcagtagcagtcgctggcgtgggtggaggg
taatgccaagagccctccctgccctctgattattctattggagtagtctg
agtcctttgactactttggctttggagcgcagtggcatgatcacgtgaac
ttcattctggccagatgagttatgtcaatggggtctgggagatgaggcgg
cccgggggtggagcaaaggcagactccaccagtcctgtctccaggagctg
taccaaaagcaaatatttggaggctgggattgcttagctctctccttgga
atcagcagactctctgaggctgggattaatttgaagaaatttactagcag
agtttgtggcagataaaacagtttgcttatttcacacttgtgtggccacc
tgctaggaactgtttgttcggtttcgaattctttaattaaaatcaacata
aaacagattgaaaacatcccaagaaggggatgcttggtttgctggaggat
attgcagaaagatggagtaaagtggttaaaaaacaaaaaacaaacaaaaa
aaccccccaaaaaacaaaaacaaaaaaaccataaaaacaacacccccccc
cccaactgatttgctaccaaacaagccggcaggtagaaaagcacagggtg
ggtggggtcaggcttgtgcacgtgtgtatgtgccggagctgctgccagga
agcacaggggccacccgcaagacctcaggagtgtctatgatggctgaggg
ttggaacatcttggaaagggtgaactaaatgtgttttccaacaaatcccc
tgcttgctctgccttgacgttaggatcagagcggcccttgccctctgaaa
gctcagaatccagtaagccagacactgaggtagtggccaccaacctgggt
ggccataatactgcaagaaggggacagagcccagcactgtgccagccagg
agggttccatggaggggtgggaggggctctggcccagacttgccaaagag
ttaagtcttgtctcagctgaacttggaagagtgtggatggcaaagtattc
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46328159_46329277
seq2: B6Ng01-274J06.b_34_1187 (reverse)

seq1  TCCTAGAGCC--TCATGTGTTGAAAGCT-GGGCT-ATA-TAGCTTG-TGT  44
      ||||||||||   ||||   |||||||| ||||| ||| ||||||| |||
seq2  TCCTAGAGCCCTCCATGGTGTGAAAGCTCGGGCTAATATTAGCTTGATGT  50

seq1  CCGTGTTGGAAGGTGGTAGGATCTT--CAGGAAGTAGAG--CCCAG-TGG  89
      ||||| ||||||||||||||||  |  | ||||||||||  ||| | |||
seq2  CCGTGGTGGAAGGTGGTAGGATACTCCCGGGAAGTAGAGGCCCCGGTTGG  100

seq1  GAGACCATAGTTAGGTCACC-AAGGGCATGT--CCTTG-AGAGAAC-ATT  134
      ||  ||||||| |||||||| ||||||||||  ||||| ||||||| |||
seq2  GAAGCCATAGTAAGGTCACCAAAGGGCATGTTCCCTTGAAGAGAACAATT  150

seq1  TGAAACCC-TGGCTCC--TCTGTCTTTGCATCCC--AGCTGACATGA-GG  178
      |||||||| |||||||   |||||||||||||||   |||||||||| ||
seq2  TGAAACCCTTGGCTCCCTCCTGTCTTTGCATCCCCAGGCTGACATGAGGG  200

seq1  TG-AGGCAG-AGGCAGCTTGCTCTA-CCATATGCTCCTAACAC-AAAGTC  224
      || |||||| ||||||  ||||||| ||||||||||||||||| ||||||
seq2  TGAAGGCAGAAGGCAGGCTGCTCTACCCATATGCTCCTAACACAAAAGTC  250

seq1  TCTTCCACCACAGG-CCCCCAAT-CAACA--GAGTTG-ACTACG-AACTG  268
      |||| ||||||||| |||||||| |||||   ||||| |||||| |||||
seq2  TCTT-CACCACAGGCCCCCCAATCCAACAAGAAGTTGAACTACGAAACTG  299

seq1  -AGACCT-CCGACACAGTG-AGGC-AAAATAAACCTTTCCTCTTTATACA  314
       |||||| ||||||||||| |||| |||||||||||||||||||||||||
seq2  AAGACCTCCCGACACAGTGAAGGCAAAAATAAACCTTTCCTCTTTATACA  349

seq1  TCGACTCACTTGGGTATTTTGTCACAGCAACTACAAGGTTTCTAACACAC  364
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACTCACTTGGGTATTTTGTCACAGCAACTACAAGGTTTCTAACACAC  399

seq1  ACTGAAGTTATTCCTCACTGCAGAGTAGCTGTTTGAAGGACAGTGAGCCT  414
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTTATTCCTCACTGCAGAGTAGCTGTTTGAAGGACAGTGAGCCT  449

seq1  TTCTCCTCAGCTTTGGGCTCTGCTTGCAGATGCAGCCTAACCGGTCTGAG  464
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCAGCTTTGGGCTCTGCTTGCAGATGCAGCCTAACCGGTCTGAG  499

seq1  ACTCCTTCCCTGGGCACTGACATCTAACTCTTGCTGGTCAGTACTCAGTG  514
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTCCCTGGGCACTGACATCTAACTCTTGCTGGTCAGTACTCAGTG  549

seq1  GATCTGGAAAGCTTCCCAGAAGAACATGATTAGAGCCAGTGAACAGGTTA  564
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGAAAGCTTCCCAGAAGAACATGATTAGAGCCAGTGAACAGGTTA  599

seq1  CCTCTCAGCTGTCAGGCAACAAAGCAACTCGCTCAACCCTACGAGGCGGG  614
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCTGTCAGGCAACAAAGCAACTCGCTCAACCCTACGAGGCGGG  649

seq1  CACTCTATTGGGCCTTGCTTCATGGGCGAGGAAGTAAAGGCCTGGGAGGT  664
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTATTGGGCCTTGCTTCATGGGCGAGGAAGTAAAGGCCTGGGAGGT  699

seq1  GACAAACTGACCAGTGTGATGTGCCTGCTTAGTGGGAAATGACTTGCATC  714
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAACTGACCAGTGTGATGTGCCTGCTTAGTGGGAAATGACTTGCATC  749

seq1  CTGGAAGTGGAGTGCTGGAGACCATCTTAGCACCTTCTCAGGCCTGGATT  764
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGGAAGTGGAGTGCTGGAGACCATCTTAGCACCTTTTCAGGCCTGGATT  799

seq1  CCACTCACGTAAAGGTTTACAGGTCAGCAGTGATACACACCTGTAACCCA  814
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACGTAAAGGTTTACAGGTCAGCAGTGATACACACCTGTAACCCA  849

seq1  GCACTCTAGGGTAAAGTAGGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT  864
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTAGGGTAAAGTAGGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTT  899

seq1  TGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTTCTGGAACTCACTTTGT  914
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTTCTGGAACTCACTTTGT  949

seq1  AGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  964
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAG  999

seq1  TGCCGGGATTAAAGGCGTGCGCCACCACTGCCTAGCCAAGTAAGAGGATC  1014
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGGGATTAAAGGCGTGCGCCACCACTGCCTAGCCAAGTAAGAGGATC  1049

seq1  TTGAGATCATGTGTTTGAAGCCAGGTTTAGCCACATAGTGAAATTATGCC  1064
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATCATGTGTTTGAAGCCAGGTTTAGCCACATAGTGAAATTATGCC  1099

seq1  TAGGGGGAAAAAAAAAGAACCAAAAAAGAATTCACAGATTAATCCAAATG  1114
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGAAAAAAAAAGAACCAAAAAAGAATTCACAGATTAATCCAAATG  1149

seq1  AATTC  1119
      |||||
seq2  AATTC  1154

seq1: chr9_46185265_46186306
seq2: B6Ng01-274J06.g_66_1117

seq1  GAATTCAGGTGGTGGGCGGGGCAGTAGCAGTCGCTGGCGTGGGTGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTGGTGGGCGGGGCAGTAGCAGTCGCTGGCGTGGGTGGAGGG  50

seq1  TAATGCCAAGAGCCCTCCCTGCCCTCTGATTATTCTATTGGAGTAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAAGAGCCCTCCCTGCCCTCTGATTATTCTATTGGAGTAGTCTG  100

seq1  AGTCCTTTGACTACTTTGGCTTTGGAGCGCAGTGGCATGATCACGTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTGACTACTTTGGCTTTGGAGCGCAGTGGCATGATCACGTGAAC  150

seq1  TTCATTCTGGCCAGATGAGTTATGTCAATGGGGTCTGGGAGATGAGGCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTGGCCAGATGAGTTATGTCAATGGGGTCTGGGAGATGAGGCGG  200

seq1  CCCGGGGGTGGAGCAAAGGCAGACTCCACCAGTCCTGTCTCCAGGAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGGTGGAGCAAAGGCAGACTCCACCAGTCCTGTCTCCAGGAGCTG  250

seq1  TACCAAAAGCAAATATTTGGAGGCTGGGATTGCTTAGCTCTCTCCTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAGCAAATATTTGGAGGCTGGGATTGCTTAGCTCTCTCCTTGGA  300

seq1  ATCAGCAGACTCTCTGAGGCTGGGATTAATTTGAAGAAATTTACTAGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGACTCTCTGAGGCTGGGATTAATTTGAAGAAATTTACTAGCAG  350

seq1  AGTTTGTGGCAGATAAAACAGTTTGCTTATTTCACACTTGTGTGGCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTGGCAGATAAAACAGTTTGCTTATTTCACACTTGTGTGGCCACC  400

seq1  TGCTAGGAACTGTTTGTTCGGTTTCGAATTCTTTAATTAAAATCAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAACTGTTTGTTCGGTTTCGAATTCTTTAATTAAAATCAACATA  450

seq1  AAACAGATTGAAAACATCCCAAGAAGGGGATGCTTGGTTTGCTGGAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTGAAAACATCCCAAGAAGGGGATGCTTGGTTTGCTGGAGGAT  500

seq1  ATTGCAGAAAGATGGAGTAAAGTGGTTAAAAAACAAAAAACAAACAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGAAAGATGGAGTAAAGTGGTTAAAAAACAAAAAACAAACAAAAA  550

seq1  AACCCCCCAAAAAACAAAAACAAAAAAACCATAAAAACAACACCCCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCAAAAAACAAAAACAAAAAAACCATAAAAACAACACCCCCCCC  600

seq1  CCCAACTGATTTGCTACCAAACAAGCCGGCAGGTAGAAAAGCACAGGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGATTTGCTACCAAACAAGCCGGCAGGTAGAAAAGCACAGGGTG  650

seq1  GGTGGGGTCAGGCTTGTGCACGTGTGTATGTGCCGGAGCTGCTGCCAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTCAGGCTTGTGCACGTGTGTATGTGCCGGAGCTGCTGCCAGGA  700

seq1  AGCACAGGGGCCACCCGCAAGACCTCAGGAGTGTCTATGATGGCTGAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGGGGCCACCCGCAAGACCTCAGGAGTGTCTATGATGGCTGAGGG  750

seq1  TTGGAACATCTTGGAAAGGGTGAACTAAATGTGTTTTCCAACAAATCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACATCTTGGAAAGGGTGAACTAAATGTGTTTTCCAACAAATCCCC  800

seq1  TGCTTGCTCTGCCTTTGACGTTAGGATCAGAGCGGCCCTTGCCCTCTGAA  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCTCTGCC-TTGACGTTAGGATCAGAGCGGCCCTTGCCCTCTGAA  849

seq1  AGCTCAGAATCCAGTAAGCCAGACACTGAGGTAGTGGCCACC-ACCTGGG  899
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCTCAGAATCCAGTAAGCCAGACACTGAGGTAGTGGCCACCAACCTGGG  899

seq1  TGGCCATAATACTGCAGGAAGGGGACAGAG-CCAGCACTGTGCCAGCCA-  947
      |||||||||||||||| ||||||||||||| |||||||||||||||||| 
seq2  TGGCCATAATACTGCAAGAAGGGGACAGAGCCCAGCACTGTGCCAGCCAG  949

seq1  GAGGG-TCCATGGA-GGGTGGGAGGGGCTCTGG-CCAGAC-TGCC-AAGA  992
      ||||| |||||||| |||||||||||||||||| |||||| |||| ||||
seq2  GAGGGTTCCATGGAGGGGTGGGAGGGGCTCTGGCCCAGACTTGCCAAAGA  999

seq1  GTTAAGTTCTGTCTCAGCTGAAATCTGAAGA--GTGGATGG-AAAGTATT  1039
      |||||||  ||||||||||||| |  |||||  |||||||| ||||||||
seq2  GTTAAGTCTTGTCTCAGCTGAACTTGGAAGAGTGTGGATGGCAAAGTATT  1049

seq1  CAT  1042
      |||
seq2  CAT  1052