BAC Information

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BAC

Clone NameB6Ng01-275H23
Chromosome9 (Build37)
Map Location 53,723,707 - 53,724,440
singlet/doubletsinglet
Overlap genenone
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln
Downstream geneLOC100038996, Elmod1, Tnfaip8l3, Cyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275H23.bB6Ng01-275H23.g
ACCGA076520GA076521
length1,105741
definitionB6Ng01-275H23.b B6Ng01-275H23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgcttcagagctactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tcttttttcttttccttccttctaatctctccccaggtattcttacctga
cctaaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagattaccctgaatttcatccagaattttcagccctatcttaat
cacctgataacatgtgaaaaggaacaaaagggctcctaacactagaaaaa
attcaaggccaaacattttccactttacttctgatagactgtcttgaatt
tccttagaaagttcaaggccaggcttacctcgtaaaactgtactcactgg
tactctcgttccccagctgaaaagttctgaattcatgcagttgaatcctt
cttaacagtctgctttacgggaacctttattaccgcgacccgcagttctg
gttctggaatgagggatcttccttgcgccggtcccgagttttcttgtatt
ttttcgtcccggattttttctcgtcccggatttcagcaccaattcttaat
agcgttctcacgcccggccaggaagaacacaacagaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagctaggagcgcaaaccccca
gccccaaaaagcgaaagccaccccaataatgaaaccgaaacccctttcct
atttaggagagttatatttcgcctaggatgcatcactccctgattggctg
cagcccatggccgagctgacgttcacgggaaaggcagagtacaagtagtc
gtaaaatacccttggcacatgcgcagattatttgtttaccacttagacac
aggatgtcagcgccatcttgtgacggcgaatgtggggcggctccaacata
gatgtttgcctacatacatgtttgtgttccaatgtgtgcctgatgtcatg
gagaccagaaaagggcattggatccccttcaactgaagataaaacagaat
ggttg
gaattccttaccatttggtattaagaaatcttagagttcctggccaatgc
acaaaaaaggttgttccagaaagtgtccgtgaaccacaaaagaccaccaa
ggaactggttccaatgcattcacactagggtctcttttcaagcttgagag
attggaccacaccatcatctctaacagtggaggacgcagccctgagccta
gtgtcaggcaagcatttgtagaggcaagaaactggtatctagcctggcac
acatctgattggggggaggggggcattatggcctttaacataattgacca
taatggcagtcaaaccctaaacttcacttctgctttcctcctgactggtg
gttgttaggaagtgaagtgtcaggggtaagcttgtaacatggaggtaaag
atttgctgggaaataacctggaaactggtgatagatgcaggttttgttgg
ggagtagcctggaaactggtgctaggtgccagctttttagttaactcaag
tttaaccttaggtcaggttccctgagatggagtctgaacccaaaatctgg
tctctcggtaagtagtagacatagaggatagaacaacccaacatttattg
ggagcccagatgtttcatcaaaattcaatgatgccaaacatggagctgca
ggaattagggttcaactcactacttttaacctgcatctgggagtccagat
cattgcatgggtgctctctagtgaaaattctctctggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53723707_53724440
seq2: B6Ng01-275H23.g_64_804 (reverse)

seq1  TCTTCCAGAGAGA--TTTCACTAGAGAGCA-CCATGCAATGATCTGGACT  47
      |||||||||||||  ||||||||||||||| |||||||||||||||||||
seq2  TCTTCCAGAGAGAATTTTCACTAGAGAGCACCCATGCAATGATCTGGACT  50

seq1  CCCAGATGCA-GTTAAAAGTAGTGAGTTGAACCCTAATTCCTGCAGCTCC  96
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATGCAGGTTAAAAGTAGTGAGTTGAACCCTAATTCCTGCAGCTCC  100

seq1  ATGTTTGGCATC-TTGAATTTTGATGAAACATCTGGGCT-CCAAT-AATG  143
      |||||||||||| |||||||||||||||||||||||||| ||||| ||||
seq2  ATGTTTGGCATCATTGAATTTTGATGAAACATCTGGGCTCCCAATAAATG  150

seq1  TTGGGTTGTTCTATCCTCTATGTCTACTACTTACCGAGAGACCAGATTTT  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGTTCTATCCTCTATGTCTACTACTTACCGAGAGACCAGATTTT  200

seq1  GGGTTCAGACTCCATCTCAGGGAACCTGACCTAAGGTTAAACTTGAGTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAGACTCCATCTCAGGGAACCTGACCTAAGGTTAAACTTGAGTTA  250

seq1  ACTAAAAAGCTGGCACCTAGCACCAGTTTCCAGGCTACTCCCCAACAAAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAGCTGGCACCTAGCACCAGTTTCCAGGCTACTCCCCAACAAAA  300

seq1  CCTGCATCTATCACCAGTTTCCAGGTTATTTCCCAGCAAATCTTTACCTC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCTATCACCAGTTTCCAGGTTATTTCCCAGCAAATCTTTACCTC  350

seq1  CATGTTACAAGCTTACCCCTGACACTTCACTTCCTAACAACCACCAGTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTACAAGCTTACCCCTGACACTTCACTTCCTAACAACCACCAGTCA  400

seq1  GGAGGAAAGCAGAAGTGAAGTTTAGGGTTTGACTGCCATTATGGTCAATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAGCAGAAGTGAAGTTTAGGGTTTGACTGCCATTATGGTCAATT  450

seq1  ATGTTAAAGGCCATAATGCCCCCCTCCCCCCAATCAGATGTGTGCCAGGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAGGCCATAATGCCCCCCTCCCCCCAATCAGATGTGTGCCAGGC  500

seq1  TAGATACCAGTTTCTTGCCTCTACAAATGCTTGCCTGACACTAGGCTCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATACCAGTTTCTTGCCTCTACAAATGCTTGCCTGACACTAGGCTCAG  550

seq1  GGCTGCGTCCTCCACTGTTAGAGATGATGGTGTGGTCCAATCTCTCAAGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCGTCCTCCACTGTTAGAGATGATGGTGTGGTCCAATCTCTCAAGC  600

seq1  TTGAAAAGAGACCCTAGTGTGAATGCATTGGAACCAGTTCCTTGGTGGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAGAGACCCTAGTGTGAATGCATTGGAACCAGTTCCTTGGTGGTC  650

seq1  TTTTGTGGTTCACGGACACTTTCTGGAACAACCTTTTTTGTGCATTGGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGTTCACGGACACTTTCTGGAACAACCTTTTTTGTGCATTGGCC  700

seq1  AGGAACTCTAAGATTTCTTAATACCAAATGGTAAGGAATTC  734
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTCTAAGATTTCTTAATACCAAATGGTAAGGAATTC  741