BAC Information

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BAC

Clone NameB6Ng01-276F14
Chromosome9 (Build37)
Map Location 98,142,085 - 98,143,219
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim42, Clstn2
Downstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276F14.bB6Ng01-276F14.g
ACCGA077154GA077155
length1,1381,150
definitionB6Ng01-276F14.b B6Ng01-276F14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgaaatggctctccatgcaaatgaggcactcttctattcccta
agctgtgggcaatgatacttatccgccatggaaatccctagctgattctt
ccaatctctacggctcttgaacctggaatgaagtccagctgcctctctga
agctgatcctggtagtccatcatttttgcccctactcatgggaccatctg
aacctggtccttgaactctgctcccatttttttttttttttttttttttt
ttgtgggccagtggccaatggtccctggggagaagggaggacacaaggtt
gtgctggagaactttgaggctagcaccctttggctacaccactaacttca
tgctacagcattttgcacatttttttctgtaggctccacttaagccaacc
ccctgccctggccatggctggggtcatcataaggggttaacagaacagga
tgttgagtatagatggagtttaaggtcagggatcgtatataggcaattct
gtggataggtggcactgggagctcttgacttgcagctctgctatgcttgt
catgtgttggctgatacaacttactgaacccttagcagggtccactgtct
cctccaaacttcaaaataatgcagcgtgatatgataacattattcttgtt
tgggaactgagtgttagctaggcatgtagctagcagggggaatagctgga
actcatacacctatctaagtagagatttcattctctttcaatttgttacg
ctgtttactctttagaaatacatattttggaaaaaatcacaaagtagatg
tcttatgtcacttgagttatctgaaaggatggaaactcaagtgggaaaat
gcctccctccctttcttcataagatccagctgtaaggtggtttttaaaat
tagtgattgatggggggaggggtccagcccaattgtgggtggtgccattc
ctgagttgggtggtcctggctttcataaggcacggcttatgagaaaaagc
cagtaagcagcacctccctctgttgcctcctgcatcagctcctgccttag
ttctgccctggtgtgagtctgtcagacttcctccagtgatgatgaacagc
atgtgcaagtgtaagccaataaaccaattcctccccaa
gaattctgtgcttaaaccacctaaccctgggctgcttttttttttctttc
ttttttcccttaggaaaattttaatgactgcctttatttcactatggggt
tataggtatatttaaattgcttatctgatcttgatttaactttggtaaca
ggtctgtattaaaaaaaatccatttcttttagattttccacttaagagta
caggtttttaatatatgtcttcatgattctctgcattttctctgtgtccg
tttatatgtccccctttttgtttaggattttattaatttggatattcttt
ctctgccttttagttagtttggataaagttttgtcagacctgttgattct
ctcaaagaatcaacttttgcttcatgactctttacgttgttctctttgtt
tctattttactgatttcagccatcattttatttcttgcagtctactcctc
ttgggtgtgattacttcttttcttctagagctttcaggcattccattaag
ttgtgaatataagatctctccagttctttatgtaggcacttagtgctagc
aactttcttcttagcactactttcattgtgtcccatgggtctggatatgc
tgtgtatttattttcattgaattctagaaagtctgtcatttttttatttc
tgtcttgacacgtttttcattgagtagagaattgctcagtttctgatagt
tttaagctgtctgttgtttctcttgtggtggtgcccagctttaatctgtg
gcggtctgatgggatgcagaaaattgtttcaattttcttgtatctttata
tttatattgaaaattttcttttgtgactgagtatgtggtcaattttgggg
gaaagttctgtgagatattgagaagaaaggtatgttcatttgcatttggg
gaaaatattctgtagatatctgctaggcccatttgggtttatagcatctg
ttagctccatatttctctgcctaaattttgtatggataatctatccattg
atgagaaaggggtgttgaaatctccatttgtcagtgcgtggaggtcaata
tgtgattaaagctagtgtgtttctttacaaagtggtgcctttatgtttgg
catagagtagattgacattgttcgatgactttccgtgatggcatatgtag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_98142085_98143219
seq2: B6Ng01-276F14.b_42_1179 (reverse)

seq1  TTGGGGAGGAATGGGTTTATTTGGCTTACACTTCCACATTGCTGTTCATC  50
      |||||||||||| |||||| ||||||||||||| |||| |||||||||||
seq2  TTGGGGAGGAATTGGTTTA-TTGGCTTACACTTGCACA-TGCTGTTCATC  48

seq1  ATCACTGGAGGAAGTCTGGACAGGAACTCACA-CAGGGCAAGAACCTAAG  99
      ||||||||||||||||| |||||  ||||||| |||||| |||| |||| 
seq2  ATCACTGGAGGAAGTCT-GACAG--ACTCACACCAGGGC-AGAA-CTAA-  92

seq1  GGCAGGAGCTGATGCA-GAGGCCACAGAGG--AGTGCTGCTTACTGGCTT  146
      |||||||||||||||| ||||| |||||||   |||||||||||||||||
seq2  GGCAGGAGCTGATGCAGGAGGCAACAGAGGGAGGTGCTGCTTACTGGCTT  142

seq1  TTTCTCATAAGCC-TGCCTTATGGAAGCCAGGACCA-CCAACTCAGGAAT  194
      ||||||||||||| ||||||||| |||||||||||| |||||||||||||
seq2  TTTCTCATAAGCCGTGCCTTATGAAAGCCAGGACCACCCAACTCAGGAAT  192

seq1  GGCACCACCCACAA-TGGGCTGGACCC--TCCCCCATCAATCACTAATTT  241
      |||||||||||||| ||||||||||||   ||||||||||||||||||||
seq2  GGCACCACCCACAATTGGGCTGGACCCCTCCCCCCATCAATCACTAATTT  242

seq1  TAAAAACCACCTTACAGCTGGATCTTATGAAGAAAGG--AGGAGGCATTT  289
      |||||||||||||||||||||||||||||||||||||   ||||||||||
seq2  TAAAAACCACCTTACAGCTGGATCTTATGAAGAAAGGGAGGGAGGCATTT  292

seq1  TCCCACTTGAGTTTCCATCCTTTCAGATAACTCAAGTGACATAAGACATC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTGAGTTTCCATCCTTTCAGATAACTCAAGTGACATAAGACATC  342

seq1  TACTTTGTGATTTTTTCCAAAATATGTATTTCTAAAGAGTAAACAGCGTA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTGATTTTTTCCAAAATATGTATTTCTAAAGAGTAAACAGCGTA  392

seq1  ACAAATTGAAAGAGAATGAAATCTCTACTTAGATAGGTGTATGAGTTCCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGAAAGAGAATGAAATCTCTACTTAGATAGGTGTATGAGTTCCA  442

seq1  GCTATTCCCCCTGCTAGCTACATGCCTAGCTAACACTCAGTTCCCAAACA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCCCCCTGCTAGCTACATGCCTAGCTAACACTCAGTTCCCAAACA  492

seq1  AGAATAATGTTATCATATCACGCTGCATTATTTTGAAGTTTGGAGGAGAC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAATGTTATCATATCACGCTGCATTATTTTGAAGTTTGGAGGAGAC  542

seq1  AGTGGACCCTGCTAAGGGTTCAGTAAGTTGTATCAGCCAACACATGACAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACCCTGCTAAGGGTTCAGTAAGTTGTATCAGCCAACACATGACAA  592

seq1  GCATAGCAGAGCTGCAAGTCAAGAGCTCCCAGTGCCACCTATCCACAGAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCAGAGCTGCAAGTCAAGAGCTCCCAGTGCCACCTATCCACAGAA  642

seq1  TTGCCTATATACGATCCCTGACCTTAAACTCCATCTATACTCAACATCCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATATACGATCCCTGACCTTAAACTCCATCTATACTCAACATCCT  692

seq1  GTTCTGTTAACCCCTTATGATGACCCCAGCCATGGCCAGGGCAGGGGGTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTAACCCCTTATGATGACCCCAGCCATGGCCAGGGCAGGGGGTT  742

seq1  GGCTTAAGTGGAGCCTACAGAAAAAAATGTGCAAAATGCTGTAGCATGAA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAGTGGAGCCTACAGAAAAAAATGTGCAAAATGCTGTAGCATGAA  792

seq1  GTTAGTGGTGTAGCCAAAGGGTGCTAGCCTCAAAGTTCTCCAGCACAACC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGGTGTAGCCAAAGGGTGCTAGCCTCAAAGTTCTCCAGCACAACC  842

seq1  TTGTGTCCTCCCTTCTCCCCAGGGACCATTGGCCACTGGCCCACAAAAAA  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCCTCCCTTCTCCCCAGGGACCATTGGCCACTGGCCCACAAAAAA  892

seq1  AAAAAAAAAAAAAAAAAAAATGGGAGCAGAGTTCAAGGACCAGGTTCAGA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAATGGGAGCAGAGTTCAAGGACCAGGTTCAGA  942

seq1  TGGTCCCATGAGTAGGGGCAAAAATGATGGACTACCAGGATCAGCTTCAG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCATGAGTAGGGGCAAAAATGATGGACTACCAGGATCAGCTTCAG  992

seq1  AGAGGCAGCTGGACTTCATTCCAGGTTCAAGAGCCGTAGAGATTGGAAGA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGCTGGACTTCATTCCAGGTTCAAGAGCCGTAGAGATTGGAAGA  1042

seq1  ATCAGCTAGGGATTTCCATGGCGGATAAGTATCATTGCCCACAGCTTAGG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTAGGGATTTCCATGGCGGATAAGTATCATTGCCCACAGCTTAGG  1092

seq1  GAATAGAAGAGTGCCTCATTTGCATGGAGAGCCATTTCAGGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAAGAGTGCCTCATTTGCATGGAGAGCCATTTCAGGAATTC  1138