BAC Information

Click to search

BAC

Clone NameB6Ng01-276L06
Chromosome9 (Build37)
Map Location 41,280,953 - 41,282,033
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
Downstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276L06.bB6Ng01-276L06.g
ACCGA077419GA077420
length9561,078
definitionB6Ng01-276L06.b B6Ng01-276L06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcccactattattgtgtgaggtgcaatttgtgctttgggcttta
ctaaggtttctttaatgaatgtggctgcctttgcatttggagcatagata
ttcagaattgatagttcctcttggaagatttttacctttgatgagtatga
agtgcccttccttgtcttctttgataactttgggttggaagtcgatttta
ttcgatattggaatggctactccagcttgtttcttcagaccatttgcttg
gaaaattgttttccagcctttcactctgaggtagtgtctgtctttttccc
tgagatgggtttcctgtaatcagcaatatgttgggtcctgtttgtgtagc
cagtctgttagtctatgtctttttattggggaattgagtccattgatatt
aagagatactaaggaaaagtaattgttgcttcctattatttttgttgtta
gagttggcattctgttcttgtggctgtcttcttttcggtttgttgaagga
ttactttcttgctttttctagggtgtagtttctgtccttgtattgttttt
ttttttctgttattatcctttgaagggctggatttgtggaaagatatggt
gtgaatttggttttgtcatggaatactttggtttctccatctatgttaat
tgaaagtttggctgggtatagtagcctggtctggcatttgtgttctctta
gtgtctgtataatatctgtccaggatcttctggctttcatagtctctggt
gaaaagtttggtgttctaataggcctccctttacatgttagttgaccttt
ttcccttactgcctttaatattctatctttattcagtgcatttgtttgtt
gtgattattatgtgtcgggaggaatttctttctggtccagtctatttgga
gttcttgtagcttcttgtatgttcatgggcatctctttctttaagtttgg
aaactt
gaattcaattcatcattatgtcaaatggggaaggggacccataggaccag
ctggaagctctttatttaccagttagtgaagggtaaatgaccaaggagat
cttccaagttgatgacagtgatttggtgctgatgctaggtagccaccctc
cttgtgatacaatctcctttcaccatcagaccagttgggaaaccttgact
gtgagattagaaaagccctattttggtgataaagaaactgaggtcggaat
ggttaatggaccagcctgtgatcaaatcgaaatctctgaaagcttagagc
ccatttcacatggcatactaccacatggtctcatctagcaatcctgggga
gtggggctttcgcaaggaatcaacataaaacacttcctatttactcggca
gacaaaatcataagccgaggttcactcatctctcttcaattctactacct
tcctgcagtgctgggggcagcactgtactgaaccacatgggtgttcaacc
aaccaacccaacaaaaacagcaacaaaagacttaaagatgggcatggtaa
tgcaggcctgtaactctagaatgcagatggtgaaggcaggagggttcaga
gttcaagcccatcctcgaccatgtagcaagttcaagaccagccaacgctc
tataagactgtttatccaaagaaagaaaaggcaaagttggacttggtata
agatggatggtaacattatatttcttaagaactatggttacttcaagggc
tcttttatggacactacaggattagtttccaaatagcaatagcaacccaa
gtaaaagaagcttatgatattaagatgccagtggtaatgataatgaagaa
gaaaacccagttaatggtatgattattgatcatagtgggtcaatcactat
ttctcagacctgtcctgggtccttgggtttgagcaagagtttaaatgact
ctgacagtgttgcttcaggttctgtttataaactcacatcaggccaagcc
acaacccaaacgtaacacaaagattcaaaggtgggcactgagtgcaggct
gtattctagagtgcagatggtgaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41280953_41282033
seq2: B6Ng01-276L06.g_67_1144 (reverse)

seq1  CTGCCTTCACCATCTGCACTCTAGAATTACAGGCCTGCACTTCAGTGCCC  50
      ||||| |||||||||||||||||||| |||| |||||||| |||||||||
seq2  CTGCC-TCACCATCTGCACTCTAGAA-TACA-GCCTGCAC-TCAGTGCCC  46

seq1  ACCTTTGAATCTTTTGTTGTTTACGTTTGGTTGGTTGGCTTGGCTTGATG  100
      ||||||||||| |||||   |||||||||| | | ||||||||| |||||
seq2  ACCTTTGAATC-TTTGT--GTTACGTTTGGGTTG-TGGCTTGGCCTGATG  92

seq1  TGAGTTTAT-AACAGAA-CTGAAGC-ACACTGTCAGAGTCATTT-AACTC  146
      ||||||||| ||||||| ||||||| |||||||||||||||||| |||||
seq2  TGAGTTTATAAACAGAACCTGAAGCAACACTGTCAGAGTCATTTAAACTC  142

seq1  TTGCTC-AACCCAAGGACCCAGGACAGGTCTGAGAAATAGTGATTGACCC  195
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAACCCAAGGACCCAGGACAGGTCTGAGAAATAGTGATTGACCC  192

seq1  ACTATGATCAATAATCATACCATTAACTGGGTTTTCTTCTTCATTATCAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATCAATAATCATACCATTAACTGGGTTTTCTTCTTCATTATCAT  242

seq1  TACCACTGGCATCTTAATATCATAAGCTTCTTTTACTTGGGTTGCTATTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGGCATCTTAATATCATAAGCTTCTTTTACTTGGGTTGCTATTG  292

seq1  CTATTTGGAAACTAATCCTGTAGTGTCCATAAAAGAGCCCTTGAAGTAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGGAAACTAATCCTGTAGTGTCCATAAAAGAGCCCTTGAAGTAAC  342

seq1  CATAGTTCTTAAGAAATATAATGTTACCATCCATCTTATACCAAGTCCAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCTTAAGAAATATAATGTTACCATCCATCTTATACCAAGTCCAA  392

seq1  CTTTGCCTTTTCTTTCTTTGGATAAACAGTCTTATAGAGCGTTGGCTGGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTTTTCTTTCTTTGGATAAACAGTCTTATAGAGCGTTGGCTGGT  442

seq1  CTTGAACTTGCTACATGGTCGAGGATGGGCTTGAACTCTGAACCCTCCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTTGCTACATGGTCGAGGATGGGCTTGAACTCTGAACCCTCCTG  492

seq1  CCTTCACCATCTGCATTCTAGAGTTACAGGCCTGCATTACCATGCCCATC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCATCTGCATTCTAGAGTTACAGGCCTGCATTACCATGCCCATC  542

seq1  TTTAAGTCTTTTGTTGCTGTTTTTGTTGGGTTGGTTGGTTGAACACCCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCTTTTGTTGCTGTTTTTGTTGGGTTGGTTGGTTGAACACCCAT  592

seq1  GTGGTTCAGTACAGTGCTGCCCCCAGCACTGCAGGAAGGTAGTAGAATTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCAGTACAGTGCTGCCCCCAGCACTGCAGGAAGGTAGTAGAATTG  642

seq1  AAGAGAGATGAGTGAACCTCGGCTTATGATTTTGTCTGCCGAGTAAATAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGATGAGTGAACCTCGGCTTATGATTTTGTCTGCCGAGTAAATAG  692

seq1  GAAGTGTTTTATGTTGATTCCTTGCGAAAGCCCCACTCCCCAGGATTGCT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTTATGTTGATTCCTTGCGAAAGCCCCACTCCCCAGGATTGCT  742

seq1  AGATGAGACCATGTGGTAGTATGCCATGTGAAATGGGCTCTAAGCTTTCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGACCATGTGGTAGTATGCCATGTGAAATGGGCTCTAAGCTTTCA  792

seq1  GAGATTTCGATTTGATCACAGGCTGGTCCATTAACCATTCCGACCTCAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTCGATTTGATCACAGGCTGGTCCATTAACCATTCCGACCTCAGT  842

seq1  TTCTTTATCACCAAAATAGGGCTTTTCTAATCTCACAGTCAAGGTTTCCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATCACCAAAATAGGGCTTTTCTAATCTCACAGTCAAGGTTTCCC  892

seq1  AACTGGTCTGATGGTGAAAGGAGATTGTATCACAAGGAGGGTGGCTACCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTCTGATGGTGAAAGGAGATTGTATCACAAGGAGGGTGGCTACCT  942

seq1  AGCATCAGCACCAAATCACTGTCATCAACTTGGAAGATCTCCTTGGTCAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGCACCAAATCACTGTCATCAACTTGGAAGATCTCCTTGGTCAT  992

seq1  TTACCCTTCACTAACTGGTAAATAAAGAGCTTCCAGCTGGTCCTATGGGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTTCACTAACTGGTAAATAAAGAGCTTCCAGCTGGTCCTATGGGT  1042

seq1  CCCCTTCCCCATTTGACATAATGATGAATTGAATTC  1081
      ||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCCATTTGACATAATGATGAATTGAATTC  1078