BAC Information

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BAC

Clone NameB6Ng01-277B22
Chromosome9 (Build37)
Map Location 89,102,017 - 89,103,073
singlet/doubletsinglet
Overlap geneBcl2a1b
Upstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik
Downstream geneMthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277B22.bB6Ng01-277B22.g
ACCGA077724GA077725
length1,0511,141
definitionB6Ng01-277B22.b B6Ng01-277B22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccactttttgtgtcttgccatgggacaaatgtgggttggcaagag
aaagaaggcaagagaaggtcagagaggactataacttgaggccttccttt
tagccccaacattgcttatctgactgtcctatccatgaaccccaaattaa
aggccaaagagtaaagattcaggagagggcatcaataagaaactgtaaaa
atccaggaaaaggtaggaagaagattttagcctctgtaaggtttagctta
gtaacccagccttttagatcatgagcacacccttatggaaaagtctctac
ctcatgctagaggtacaaaaaggatccttccaggtcatcatctgtcctta
cttcaatacctgtcccttgtattgaatgacagactcaaaactgaaatcat
gaaacatgtacagaaacaaatactagtaatttattcattaaagttgaaac
aaaatatctgcaactctggaaagacaagtttcatgtttgtaaatggaaat
gccaagtgctgataaccattctcgtgggagccaaggttctctctggtccg
tagtgttacttgaggagaaagagcatttcccagaactgtcctgtcatctg
cagaaaagtcagccagccagatttgggttcaaacttctttatgaagccat
cttcctatgagaacaaattgaacatttaaaaatcggtgggataatctctc
tgctctctctacctgtaatcattacattttcaatatgttctctactccaa
ggctaaactccttgagaaacctttagaaacactgcccaatagaaatgtag
tttcgcctacatgtgctaatattacttcttttgctttgtagccacatatt
gagaaatgtcttagtcaatcttcttttgctgtaaagagacatcatgacca
aggcagctcttatgaaaggaagcaattaattgggggcttacttttggtct
cagaggttagtccattatcatcatgtcatgatgcacggtggcacacagct
gctaagacctatatctgatctgatcatagagagacgagatagagacggac
a
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagagagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctatccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggataaccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggtaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccgggggcctagcaac
acagaagtggatgctccacagtcagctaatggatggatcacaggctccca
atggagagctagagaagcacccaggagctaaaggatctgcaccctatagt
gatcacatatgactacagtaccccggagctctgactctagctgcatatgt
atcaaagattgctagtcgtcatcacttgaagagaggccatggaaccgact
ttaatgcctgacaggacgcaggtcaaaaaaggggaatctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89102017_89103073
seq2: B6Ng01-277B22.b_48_1098 (reverse)

seq1  TGTCTGTCTCTATCTCTGTCTCTTCCTATGGATCAGATCAGGATATAGGT  50
      |||| ||||||||||| ||||||  |||| |||||||||| |||||||||
seq2  TGTCCGTCTCTATCTC-GTCTCT--CTAT-GATCAGATCA-GATATAGGT  45

seq1  CTTAGCAGCCTGTGTGCCACCGTGCATCATGACATGATGATAATGGACTA  100
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAG-CTGTGTGCCACCGTGCATCATGACATGATGATAATGGACTA  94

seq1  ACCTCTGAGACCAAAAGTAAGCCCCCAATTAATTGCTTCCTTTCATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGAGACCAAAAGTAAGCCCCCAATTAATTGCTTCCTTTCATAAGA  144

seq1  GCTGCCTTGGTCATGATGTCTCTTTACAGCAAAAGAAGATTGACTAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTTGGTCATGATGTCTCTTTACAGCAAAAGAAGATTGACTAAGAC  194

seq1  ATTTCTCAATATGTGGCTACAAAGCAAAAGAAGTAATATTAGCACATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAATATGTGGCTACAAAGCAAAAGAAGTAATATTAGCACATGTA  244

seq1  GGCGAAACTACATTTCTATTGGGCAGTGTTTCTAAAGGTTTCTCAAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAAACTACATTTCTATTGGGCAGTGTTTCTAAAGGTTTCTCAAGGAG  294

seq1  TTTAGCCTTGGAGTAGAGAACATATTGAAAATGTAATGATTACAGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTTGGAGTAGAGAACATATTGAAAATGTAATGATTACAGGTAGA  344

seq1  GAGAGCAGAGAGATTATCCCACCGATTTTTAAATGTTCAATTTGTTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGAGAGATTATCCCACCGATTTTTAAATGTTCAATTTGTTCTCA  394

seq1  TAGGAAGATGGCTTCATAAAGAAGTTTGAACCCAAATCTGGCTGGCTGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGATGGCTTCATAAAGAAGTTTGAACCCAAATCTGGCTGGCTGAC  444

seq1  TTTTCTGCAGATGACAGGACAGTTCTGGGAAATGCTCTTTCTCCTCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCAGATGACAGGACAGTTCTGGGAAATGCTCTTTCTCCTCAAGT  494

seq1  AACACTACGGACCAGAGAGAACCTTGGCTCCCACGAGAATGGTTATCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTACGGACCAGAGAGAACCTTGGCTCCCACGAGAATGGTTATCAGC  544

seq1  ACTTGGCATTTCCATTTACAAACATGAAACTTGTCTTTCCAGAGTTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCATTTCCATTTACAAACATGAAACTTGTCTTTCCAGAGTTGCAG  594

seq1  ATATTTTGTTTCAACTTTAATGAATAAATTACTAGTATTTGTTTCTGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTTTCAACTTTAATGAATAAATTACTAGTATTTGTTTCTGTAC  644

seq1  ATGTTTCATGATTTCAGTTTTGAGTCTGTCATTCAATACAAGGGACAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATGATTTCAGTTTTGAGTCTGTCATTCAATACAAGGGACAGGT  694

seq1  ATTGAAGTAAGGACAGATGATGACCTGGAAGGATCCTTTTTGTACCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTAAGGACAGATGATGACCTGGAAGGATCCTTTTTGTACCTCTA  744

seq1  GCATGAGGTAGAGACTTTTCCATAAGGGTGTGCTCATGATCTAAAAGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAGGTAGAGACTTTTCCATAAGGGTGTGCTCATGATCTAAAAGGCT  794

seq1  GGGTTACTAAGCTAAACCTTACAGAGGCTAAAATCTTCTTCCTACCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTACTAAGCTAAACCTTACAGAGGCTAAAATCTTCTTCCTACCTTTT  844

seq1  CCTGGATTTTTACAGTTTCTTATTGATGCCCTCTCCTGAATCTTTACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATTTTTACAGTTTCTTATTGATGCCCTCTCCTGAATCTTTACTCT  894

seq1  TTGGCCTTTAATTTGGGGTTCATGGATAGGACAGTCAGATAAGCAATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTTTAATTTGGGGTTCATGGATAGGACAGTCAGATAAGCAATGTT  944

seq1  GGGGCTAAAAGGAAGGCCTCAAGTTATAGTCCTCTCTGACCTTCTCTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAAAAGGAAGGCCTCAAGTTATAGTCCTCTCTGACCTTCTCTTGC  994

seq1  CTTCTTTCTCTTGCCAACCCACATTTGTCCCATGGCAAGACACAAAAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTCTTGCCAACCCACATTTGTCCCATGGCAAGACACAAAAAGT  1044

seq1  GGAATTC  1057
      |||||||
seq2  GGAATTC  1051