BAC Information

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BAC

Clone NameB6Ng01-277K15
Chromosome9 (Build37)
Map Location 33,197,283 - 33,312,737
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343, Kirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277K15.bB6Ng01-277K15.g
ACCGA078124GA078125
length1,1241,154
definitionB6Ng01-277K15.b B6Ng01-277K15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,311,619 - 33,312,737)(33,197,283 - 33,198,444)
sequence
gaattctcatgtagatggtaggaattgaacatgggaagaacagtcagtac
tctctttttattttctttgggaggggcggtgctgttcttgttgttttctt
tacaattttagggggacaaaagattcatttttaccacaggtatgagtaat
ttttacatgttttcttataaaataaagatgtaatccatttcattttgagg
aaaaatctcatgacttctctttgaaccatccaaatttgccagcaacacta
catcctgagccattattaaatgaaataacatttccttgaacaaagatatt
attgtactaagatggtcaatttgataactaaaacaatcattagacaagtg
gttatgaggcatttgaaatgatactagcttactttaaatttttatttcct
aattatttaaccttaatactagaaatatagtgattgtttttagtgctgca
ttgtacagacagtgtatagtagatgtttccaggacataggtatagttcat
tgaccataaagatccattgtcagtggctttttctcatagcatattctaag
ggatgctgaattataaggtctagttttaagaccttcttttctcagttgtg
taaaggagtaacacagaggcgaattgggtaaacacatcaacagtagggcc
aggtatagttcatatcccatatcatactactactcaggatacagtacaat
ttaaaattaccagtgtcattcatttctaacaatttaaacagtgaagaagt
gaaacttagtagaagagagttagattattccaagtgtgttcttcaaggaa
atagtgaaattcttgtcttggtctcttgttctttcctcttcgccgccccc
ccaccccccctctttcctgggttcatgactgagaagctgagaagatccat
gtgccacgcattcccatcctgatgcccctgtacaggattgaaagtaatgg
gccactgattatggactgaaatcttctggagttgtgtgcttagtcacttt
tattcccttatgagttggatctttcctccagatattatgctacaggtaat
gcctccaaaaataaaatctagacacttggccaatcttctccctttcctcc
tgggtctggagcctattttaactt

gaattcataaggccctttatgtctattaccgataaacagaacttgtcact
tcccttaattaacagcaaatcagaggcgatttattcttacttcgcttact
cagagacacagcaagatcaaagaactcttcagtcatcctgcccttgaggt
gggcactgtcttttttattccaaattaaagtaccagctttaggctgaagc
atttagcagggctttctttaaaaggtggtttgcctagaaaagcactctca
gtgagaacactacatcagactggactacatctaagctttgaaaaaatact
gtcagaaatacagccatgaaagaatgggttcaaaccgtttgtcatgtgcc
tgtttcttctggaaaactcaccctgtgatgttgtttcttaaggatgagtg
agtgttgggaggaacaaagcagtcatagtgatcacacatctttatttgga
aaactctaatgattggtcttcactgctcattgcagcatgcaggaagcaag
gatattccttgcaccatgtgaatcccaacacacacacacacacacacaca
cacacacacacacacccctatccacctatctgattctcatgttgttcccc
gaaatccaggtcattatttgatcattgtagaaccagttttgccatctgtc
agttaacctgttcccaaggtgttcccatcaagagggcaagagatctggta
gcatgacgggttggcaatgaataggaataaaagtcttagtggagtataaa
agtatttggggggggatatactgtataatattgtgatgattgctcaaagc
tagtgggttatacacttaaaaatttgtggagagtaaatctcatgtccagg
gaaaaatgagaggattgagagctgctgacatttgtctttctagcttaaat
atacattctttattttctgttcctctcaacgtcaaagcttattgctcttt
caaatcacgaataccaaagtacttctgagatcctgggaacatgggaacat
tgaacttgaaacaccttgagcaaagatttatgaagactcaaatgctcact
gtaccaatgataacatcttctgaaccagctccactatgaccagtaattct
acctacgtcatggcaaatatcttttggaaccgtaatcatggagttcaact
ctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33311619_33312737
seq2: B6Ng01-277K15.b_48_1171 (reverse)

seq1  AAGTTAAAATAAGCTCAAAGACCCAAGGGAGAAAGGAGAAAGATT-GCCA  49
      ||||||||||| ||||  |||||| |||  ||||||   |||||| ||||
seq2  AAGTTAAAATAGGCTC-CAGACCC-AGGAGGAAAGGGAGAAGATTGGCCA  48

seq1  AGTGTCTTAGATTTTA-TTTTGGA-GCATTA-CTGTAGCATAATATCT-G  95
      |||||| ||||||||| ||||||| |||||| |||||||||||||||| |
seq2  AGTGTC-TAGATTTTATTTTTGGAGGCATTACCTGTAGCATAATATCTGG  97

seq1  AG--AAGAT-CAACTCATAAGGAAATAAAAGTTGACTTAAGCACACAACT  142
      ||  ||||| |||||||||||| |||||||| |||| |||||||||||||
seq2  AGGAAAGATCCAACTCATAAGGGAATAAAAG-TGAC-TAAGCACACAACT  145

seq1  CCAG-AGATTTCAGTCCATAATCAGTTGGCCCATTACTTTCAATCCTGTA  191
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCAGAAGATTTCAGTCCATAATCAG-TGGCCCATTACTTTCAATCCTGTA  194

seq1  CAGGGGCATCAGGATGGGAATGCGTGGCACATGGATCTTCTCAGCTTCTC  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCATCAGGATGGGAATGCGTGGCACATGGATCTTCTCAGCTTCTC  244

seq1  AGTCATGAA-CCAGGAAAGAGGGGGGGTGGGGGGGCGGCGAAGAGG-AAG  289
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  AGTCATGAACCCAGGAAAGAGGGGGGGTGGGGGGGCGGCGAAGAGGAAAG  294

seq1  AACAAGAGACCAAGACAAGAATTTCACTATTTCCTTGAAGAACACACTTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAGACCAAGACAAGAATTTCACTATTTCCTTGAAGAACACACTTG  344

seq1  GAATAATCTAACTCTCTTCTACTAAGTTTCACTTCTTCACTGTTTAAATT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATCTAACTCTCTTCTACTAAGTTTCACTTCTTCACTGTTTAAATT  394

seq1  GTTAGAAATGAATGACACTGGTAATTTTAAATTGTACTGTATCCTGAGTA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAATGAATGACACTGGTAATTTTAAATTGTACTGTATCCTGAGTA  444

seq1  GTAGTATGATATGGGATATGAACTATACCTGGCCCTACTGTTGATGTGTT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATGATATGGGATATGAACTATACCTGGCCCTACTGTTGATGTGTT  494

seq1  TACCCAATTCGCCTCTGTGTTACTCCTTTACACAACTGAGAAAAGAAGGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAATTCGCCTCTGTGTTACTCCTTTACACAACTGAGAAAAGAAGGT  544

seq1  CTTAAAACTAGACCTTATAATTCAGCATCCCTTAGAATATGCTATGAGAA  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTAGACCTTATAATTCAGCATCCCTTAGAATATGCTATGAGAA  594

seq1  AAAGCCACTGACAATGGATCTTTATGGTCAATGAACTATACCTATGTCCT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACTGACAATGGATCTTTATGGTCAATGAACTATACCTATGTCCT  644

seq1  GGAAACATCTACTATACACTGTCTGTACAATGCAGCACTAAAAACAATCA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATCTACTATACACTGTCTGTACAATGCAGCACTAAAAACAATCA  694

seq1  CTATATTTCTAGTATTAAGGTTAAATAATTAGGAAATAAAAATTTAAAGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTCTAGTATTAAGGTTAAATAATTAGGAAATAAAAATTTAAAGT  744

seq1  AAGCTAGTATCATTTCAAATGCCTCATAACCACTTGTCTAATGATTGTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGTATCATTTCAAATGCCTCATAACCACTTGTCTAATGATTGTTT  794

seq1  TAGTTATCAAATTGACCATCTTAGTACAATAATATCTTTGTTCAAGGAAA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCAAATTGACCATCTTAGTACAATAATATCTTTGTTCAAGGAAA  844

seq1  TGTTATTTCATTTAATAATGGCTCAGGATGTAGTGTTGCTGGCAAATTTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTCATTTAATAATGGCTCAGGATGTAGTGTTGCTGGCAAATTTG  894

seq1  GATGGTTCAAAGAGAAGTCATGAGATTTTTCCTCAAAATGAAATGGATTA  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTCAAAGAGAAGTCATGAGATTTTTCCTCAAAATGAAATGGATTA  944

seq1  CATCTTTATTTTATAAGAAAACATGTAAAAATTACTCATACCTGTGGTAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTATTTTATAAGAAAACATGTAAAAATTACTCATACCTGTGGTAA  994

seq1  AAATGAATCTTTTGTCCCCCTAAAATTGTAAAGAAAACAACAAGAACAGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAATCTTTTGTCCCCCTAAAATTGTAAAGAAAACAACAAGAACAGC  1044

seq1  ACCGCCCCTCCCAAAGAAAATAAAAAGAGAGTACTGACTGTTCTTCCCAT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCCCTCCCAAAGAAAATAAAAAGAGAGTACTGACTGTTCTTCCCAT  1094

seq1  GTTCAATTCCTACCATCTACATGAGAATTC  1119
      ||||||||||||||||||||||||||||||
seq2  GTTCAATTCCTACCATCTACATGAGAATTC  1124


seq1: chr9_33197283_33198444
seq2: B6Ng01-277K15.g_68_1221

seq1  GAATTCATAAGGCCCTTTATGTCTATTACCGATAAACAGAACTTGTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGGCCCTTTATGTCTATTACCGATAAACAGAACTTGTCACT  50

seq1  TCCCTTAATTAACAGCAAATCAGAGGCGATTTATTCTTACTTCGCTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAATTAACAGCAAATCAGAGGCGATTTATTCTTACTTCGCTTACT  100

seq1  CAGAGACACAGCAAGATCAAAGAACTCTTCAGTCATCCTGCCCTTGAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACAGCAAGATCAAAGAACTCTTCAGTCATCCTGCCCTTGAGGT  150

seq1  GGGCACTGTCTTTTTTATTCCAAATTAAAGTACCAGCTTTAGGCTGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACTGTCTTTTTTATTCCAAATTAAAGTACCAGCTTTAGGCTGAAGC  200

seq1  ATTTAGCAGGGCTTTCTTTAAAAGGTGGTTTGCCTAGAAAAGCACTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCAGGGCTTTCTTTAAAAGGTGGTTTGCCTAGAAAAGCACTCTCA  250

seq1  GTGAGAACACTACATCAGACTGGACTACATCTAAGCTTTGAAAAAATACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACACTACATCAGACTGGACTACATCTAAGCTTTGAAAAAATACT  300

seq1  GTCAGAAATACAGCCATGAAAGAATGGGTTCAAACCGTTTGTCATGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAAATACAGCCATGAAAGAATGGGTTCAAACCGTTTGTCATGTGCC  350

seq1  TGTTTCTTCTGGAAAACTCACCCTGTGATGTTGTTTCTTAAGGATGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCTGGAAAACTCACCCTGTGATGTTGTTTCTTAAGGATGAGTG  400

seq1  AGTGTTGGGAGGAACAAAGCAGTCATAGTGATCACACATCTTTATTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGGAGGAACAAAGCAGTCATAGTGATCACACATCTTTATTTGGA  450

seq1  AAACTCTAATGATTGGTCTTCACTGCTCATTGCAGCATGCAGGAAGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTAATGATTGGTCTTCACTGCTCATTGCAGCATGCAGGAAGCAAG  500

seq1  GATATTCCTTGCACCATGTGAATCCCAACACACACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTCCTTGCACCATGTGAATCCCAACACACACACACACACACACACA  550

seq1  CACACACACACACACCCCTATCCACCTATCTGATTCTCATGTTGTTCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACCCCTATCCACCTATCTGATTCTCATGTTGTTCCCC  600

seq1  GAAATCCAGGTCATTATTTGATCATTGTAGAACCAGTTTTGCCATCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAGGTCATTATTTGATCATTGTAGAACCAGTTTTGCCATCTGTC  650

seq1  AGTTAACCTGTTCCCAAGGTGTTCCCATCAAGAGGGCAAGAGATCTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACCTGTTCCCAAGGTGTTCCCATCAAGAGGGCAAGAGATCTGGTA  700

seq1  GCATGACGGGTTGGCAATGAATAGGAATAAAAGTCTTAGTGGAGTATAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACGGGTTGGCAATGAATAGGAATAAAAGTCTTAGTGGAGTATAAA  750

seq1  AGTATTT-GGGGGGGATATACTGTATAATATTGTGATGATTGCTCAAAGC  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGGGGGGGGATATACTGTATAATATTGTGATGATTGCTCAAAGC  800

seq1  TAGTGGGTTATACACTTAAAAATTTGTGGAGAGTAAATCTCATGTCAAGG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAGTGGGTTATACACTTAAAAATTTGTGGAGAGTAAATCTCATGTCCAGG  850

seq1  GAAAAATGAGAGGATTGAGAGCTGCTGACATTTGTCTTTCTAGCTTAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGAGAGGATTGAGAGCTGCTGACATTTGTCTTTCTAGCTTAAAT  900

seq1  ATACATTCTTTA-TTTCTGTTCCCTCTCAAACGTCAAAGCTTATTGCTCT  948
      |||||||||||| |||||||| |||||| |||||||||||||||||||| 
seq2  ATACATTCTTTATTTTCTGTT-CCTCTC-AACGTCAAAGCTTATTGCTC-  947

seq1  TTTCAAATCACG-ATACCAAGGTACTTCTGAGGAATCCTGGAACAATGGG  997
      |||||||||||| ||||||| |||||||||||  ||||||| |  |||||
seq2  TTTCAAATCACGAATACCAAAGTACTTCTGAG--ATCCTGGGAACATGGG  995

seq1  AACAATTGAAACTGAAACACCTTGAGCAAAAGATTATTGAGAACTCAAAT  1047
      ||| ||||||  ||||||||||||||| |||||||  |||  ||||||||
seq2  AAC-ATTGAACTTGAAACACCTTGAGC-AAAGATTTATGAAGACTCAAAT  1043

seq1  GCTCACTTGTAACAAATGATAACATCTTCTGAAACAAGCTCCACTATGAC  1097
      |||||| ||| || ||||||||||||||||| ||| ||||||||||||| 
seq2  GCTCAC-TGT-ACCAATGATAACATCTTCTG-AACCAGCTCCACTATGA-  1089

seq1  CCAGGTATTCTCACCTACTTCATAGCAAATATCTTTTGGAGACAGTAATC  1147
      ||||  ||||| |||||| |||| |||||||||||||||| || ||||||
seq2  CCAGTAATTCT-ACCTACGTCATGGCAAATATCTTTTGGA-ACCGTAATC  1137

seq1  -TTGAGTTC-ACTCTAT  1162
       | |||||| |||||||
seq2  ATGGAGTTCAACTCTAT  1154


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