BAC Information

Click to search

BAC

Clone NameB6Ng01-278I21
Chromosome9 (Build37)
Map Location 12,717,999 - 12,719,157
singlet/doubletsinglet
Overlap geneLOC100039680
Upstream geneLOC100039989, LOC622505
Downstream geneLOC665285, LOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-278I21.bB6Ng01-278I21.g
ACCGA078768GA078769
length1,1401,186
definitionB6Ng01-278I21.b B6Ng01-278I21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaactagaaataagtttttaacttgattcacatttctacaacata
tgtacaacacataaatatatgttcatttctagatacatgaagattttcaa
atgtgtcattgatttctaatttaaatagggttaccaaatataacttaaag
catttacatttaattgaggctgcttcctgatattggatataaccatttta
ctctatggaactgaaagaatgaatggtctgcatttggagtacatggagtt
aaaggtacattgtatcatgatgattgttcactttaacagtcaagttttcc
ttctgattttttccagtgcccctgtaaaagaaaaaaaaatagtaattatt
ggttaatttagtcttttaactttttactttttacttcaaaatttctgagg
ctgtttcattggataaataaaatgtgaggtctcttggtgaacaaaactca
taataaagaagtcttccactctgcctctcttggtctattgatgtgaagag
acaccatgaccatgagggttcttataaagaaaagcatttccttgtggctt
gtttatattttcagaggtttagtccattgtcagcatggtgtgaagcatgg
atgcatgcagccaaagatgctgcaggagcttttaagctctatattcaaat
cagtaggcattagaaagagagagactctagaactggcttgagtttttgat
accctaaaccacacccccagtgacagacatactccaacaaggccacccat
attccaacaaggccactgctcctaattcctctcaagcagtgtcattacct
aagatctagacacatgaccctctggggaccattcctagtcaaaccatcat
actgtttcttgtctctggcatggactgatttcttgagctgatttatttta
ctattgctgcagcaacaagatgtttacataggtatagttctttcattctt
tgactttcattatgtaatgtgtaaatatgtctcccataaacagacataaa
tatataatatttgattgtatttttctgatattgctaatactatgtagagt
gaaagttttcaattatttatttcctataacaaatgcatgagccttatgca
aatactataataaaatctgaatatacactggcatcacttt

gaattccttatctttccaatacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgacatgatcatgtggtttttgtcttt
tagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatgaatgattgct
ttaatgtgttcttggatttggttagcgagaattttattaaggatttttgc
atcgatattcataagagaaattggtctgaatttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttttacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacctgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgattgcgttttggatt
tcttcaggatctgttgttatgtctcccttttaatttctgattttgttaat
taagatgctgtcccctgtgccctttagtgagtctagctaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttaattctttg
aatagttcttcttgtttccacttggttgatttcacccctgagtttgatta
tttcctgctatctactcctcttgggtgaatttgcttcctttttttctaga
gcttttagatgtgttgtcagctgctagtatgtgctctctcagttttcttc
ttggaggcactcagagctatgagtttccctcttagaaatgctttcattgt
gtttcaagttcgggtacgttgtggcttcattttccattaaactctaaaag
gtctttaatttcttttctttattctttccttgacaaggatcaatgagaag
agtgttgttcagttcaacggtgaagtgctgctccattatttagtgtatga
gatccagctttaaggcccaaggggcttctggattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_12717999_12719157
seq2: B6Ng01-278I21.b_46_1185

seq1  GAATTCAACTAGAAATAAGTTTTTAACTTGATTCACATTTCTACAACATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTAGAAATAAGTTTTTAACTTGATTCACATTTCTACAACATA  50

seq1  TGTACAACACATAAATATATGTTCATTTCTAGATACATGAAGATTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACACATAAATATATGTTCATTTCTAGATACATGAAGATTTTCAA  100

seq1  ATGTGTCATTGATTTCTAATTTAAATAGGGTTACCAAATATAACTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCATTGATTTCTAATTTAAATAGGGTTACCAAATATAACTTAAAG  150

seq1  CATTTACATTTAATTGAGGCTGCTTCCTGATATTGGATATAACCATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATTTAATTGAGGCTGCTTCCTGATATTGGATATAACCATTTTA  200

seq1  CTCTATGGAACTGAAAGAATGAATGGTCTGCATTTGGAGTACATGGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGAACTGAAAGAATGAATGGTCTGCATTTGGAGTACATGGAGTT  250

seq1  AAAGGTACATTGTATCATGATGATTGTTCACTTTAACAGTCAAGTTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTACATTGTATCATGATGATTGTTCACTTTAACAGTCAAGTTTTCC  300

seq1  TTCTGATTTTTTCCAGTGCCCCTGTAAAAGAAAAAAAAATAGTAATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTTTTCCAGTGCCCCTGTAAAAGAAAAAAAAATAGTAATTATT  350

seq1  GGTTAATTTAGTCTTTTAACTTTTTACTTTTTACTTCAAAATTTCTGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTTAGTCTTTTAACTTTTTACTTTTTACTTCAAAATTTCTGAGG  400

seq1  CTGTTTCATTGGATAAATAAAATGTGAGGTCTCTTGGTGAACAAAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCATTGGATAAATAAAATGTGAGGTCTCTTGGTGAACAAAACTCA  450

seq1  TAATAAAGAAGTCTTCCACTCTGCCTCTCTTGGTCTATTGATGTGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGAAGTCTTCCACTCTGCCTCTCTTGGTCTATTGATGTGAAGAG  500

seq1  ACACCATGACCATGAGGGTTCTTATAAAGAAAAGCATTTCCTTGTGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGACCATGAGGGTTCTTATAAAGAAAAGCATTTCCTTGTGGCTT  550

seq1  GTTTATATTTTCAGAGGTTTAGTCCATTGTCAGCATGGTGTGAAGCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATTTTCAGAGGTTTAGTCCATTGTCAGCATGGTGTGAAGCATGG  600

seq1  ATGCATGCAGCCAAAGATGCTGCAGGAGCTTTTAAGCTCTATATTCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGCAGCCAAAGATGCTGCAGGAGCTTTTAAGCTCTATATTCAAAT  650

seq1  CAGTAGGCATTAGAAAGAGAGAGACTCTAGAACTGGCTTGAGTTTTTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGCATTAGAAAGAGAGAGACTCTAGAACTGGCTTGAGTTTTTGAT  700

seq1  ACCCTAAACCACACCCCCAGTGACAGACATACTCCAACAAGGCCACCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAAACCACACCCCCAGTGACAGACATACTCCAACAAGGCCACCCAT  750

seq1  ATTCCAACAAGGCCACTGCTCCTAATTCCTCTCAAGCAGTGTCATTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAACAAGGCCACTGCTCCTAATTCCTCTCAAGCAGTGTCATTACCT  800

seq1  AAGATCTAGACACATGACCCTCTGGGGACCATTCCTAGTCAAACCATCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTAGACACATGACCCTCTGGGGACCATTCCTAGTCAAACCATCAT  850

seq1  ACTGTTTCTTGTCTCTGGCATGGACTGATTTCTTGAGCTGATTTATTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTCTTGTCTCTGGCATGGACTGATTTCTTGAGCTGATTTATTTTA  900

seq1  CTATTGCTGCAGCAACAAGATGTTTACATA-GTATAGTTCTTTCATTCTT  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTATTGCTGCAGCAACAAGATGTTTACATAGGTATAGTTCTTTCATTCTT  950

seq1  TGACTTTCATTATGTTAATTGTGTAAATATGTCTCCCATTAAACAAGACA  999
      |||||||||||||||  | ||||||||||||||||||| ||||| |||||
seq2  TGACTTTCATTATGT--AATGTGTAAATATGTCTCCCA-TAAAC-AGACA  996

seq1  TAAAATATAT-ATATTTGATTGTATTTTCTGGATATTGCTAAATACTATG  1048
      | |||||||| |||||||||||||||||   ||||||||| |||||||||
seq2  T-AAATATATAATATTTGATTGTATTTTTCTGATATTGCT-AATACTATG  1044

seq1  TAGAGTGAAAAGTTTTTCAATTTATTTATTTCCCTTATTAACAAAATGGC  1098
      ||||||||||   ||||||| ||||||||||||  || |||||||   ||
seq2  TAGAGTGAAA--GTTTTCAA-TTATTTATTTCC--TA-TAACAAA--TGC  1086

seq1  ATGAGGCTTTATGCATATACTATATAATAAAATTCTGAATGTAATACACT  1148
      |||| || ||||||| ||||  |||||||||| |||||||   |||||||
seq2  ATGA-GCCTTATGCAAATAC--TATAATAAAA-TCTGAAT---ATACACT  1129

seq1  GCCATCACTTT  1159
      | |||||||||
seq2  GGCATCACTTT  1140


| Home | SequenceCutter | Blast | Download |