BAC Information

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BAC

Clone NameB6Ng01-279B03
Chromosome9 (Build37)
Map Location 33,550,143 - 33,680,257
singlet/doubletdoublet
Overlap genenone
Upstream geneEts1, LOC100041426, LOC100042343
Downstream geneKirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279B03.bB6Ng01-279B03.g
ACCGA079147GA079148
length1,1451,090
definitionB6Ng01-279B03.b B6Ng01-279B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,550,143 - 33,551,312)(33,679,161 - 33,680,257)
sequence
gaattccatcagatcactcactctgagccagtgataagtacactattaaa
ctataaagaaaatggtccatatttcaccagagaaaagagttcaaggttaa
gtgaaaggatttccttttattcccaccacatccatatagattcatgttct
ttcagccttatccccaagaagaggtttatttcactttatccaactaacca
aaacgtggcagaaaacacagcataactctacacttaccttgcaattttaa
aaaataaaaaataaagaaggcagcattcactttgtactaaccatgttttc
tttgaccacttaaaatacttcatatattgggaaataatttttgaagccta
cgtcaagttttggcttaatgaagagcaatttattttcttgtagtaagcga
gaatcatgtgtaccatgatataaaaaagaccacatgcatagaggcactct
cgcccatgggtgcctgcagtataattccattatttttgtggatgaagatt
ccagagcccagcaagtatgtaacttactcccattgtctcagtaattctgg
tgtttgatggggactaaaggactttagcctctctctgtctatctccgaaa
tcagtgacctttaccttgggtcattcaaccctttcatttccacacttact
ggagtcaaagaacattttatggctagagttttatccaagttcatgtccag
gctctaccagctgggtatctaaagcaatttctgggaatcaaagttaactc
aatcgaatttagaaccaatttgtttccattctcttgaggaagaaatgtgt
cagctattaccattcttaccatcagaccttatcactttcaaagaccacaa
cttgccctatcttcaatctggtcctgaatgcttactgatttttttcattc
taagcccgaggttgcgaggctcaaagttttgatgtactaacacataaata
aaaatattaactttacataagagacacttaaatttgggtatatatttaga
ttgagatcatgttggtatctatactcactttttcataatttatcatttgt
cacttacatccatcaaaccctctcgttctctactctcagtctcaccctca
cagccttctcttatacttctcactctttccgagcttacatcatgc

gaattcttaatggttcacttctctcagtgtagtcatccagcttgttgggg
ggaattgagtcccctgatcatgtgggacaggtgaataatccatagctcac
gtggaaatccagacatattagatgatttgtcaaggcattctgaacattat
caaacctataactcagatgttactactcattactactttcagtctgaaga
caaccacaagtctagtaatttagtgcactgaaaagtggaccaggaagagc
agatgtacacaagagccactccatgtttttctctggccactctgtgtcca
atgggccattgtcacccccccccagtctcactgacaatgttagttttagt
attggaagggaactgagaaatcttcagtgcaaatactttcaagctgagtg
ttttaggagatgaggtttcaattgtgaggcattagaagatccgtatttct
ggccttctagtaagtgagatgcccaatgtaattagaacaccactacttca
attgctattacacattgtagttacatataagactctattttaaaatggcc
ttccaatagtcttttattaaaagacgaaagacatagtaggagaggatgct
gatattatttgtgagaaagtaaatgagcagaatcattatataaaatgatg
tgtaaatcactcaaggaaaaaaaaacactgagaatagaactacaatatga
tctaggaaacctatatctgggattgtagacaaaggagtaaaaaatcaata
tatggaagatacacctgtatttccaggtttgctgaaatatagttcacaga
tgcagaatagcaaaagcttaagtgttatcaaagggtgaaagaatagtagg
tcatactccatacgtacaatggaacaatgtccagtgaggaaaagggggaa
aggctagtcttttttggagagcatgagtcaatctgggagctgttatgcga
tataaaataaactgagcctagaaaaggacatagcacatgggttctaacat
tgttaacacacaggatagaagtcaatgatgcttaccagagtctggcatga
atactgactggagagagtgaaaggtgtctaaccctacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33550143_33551312
seq2: B6Ng01-279B03.b_42_1186

seq1  GAATTCCATCAGATCACTCACTCTGAGCCAGTGATAAGTACACTATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGATCACTCACTCTGAGCCAGTGATAAGTACACTATTAAA  50

seq1  CTATAAAGAAAATGGTCCATATTTCACCAGAGAAAAGAGTTCAAGGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGAAAATGGTCCATATTTCACCAGAGAAAAGAGTTCAAGGTTAA  100

seq1  GTGAAAGGATTTCCTTTTATTCCCACCACATCCATATAGATTCATGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGATTTCCTTTTATTCCCACCACATCCATATAGATTCATGTTCT  150

seq1  TTCAGCCTTATCCCCAAGAAGAGGTTTATTTCACTTTATCCAACTAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTTATCCCCAAGAAGAGGTTTATTTCACTTTATCCAACTAACCA  200

seq1  AAACGTGGCAGAAAACACAGCATAACTCTACACTTACCTTGCAATTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGGCAGAAAACACAGCATAACTCTACACTTACCTTGCAATTTTAA  250

seq1  AAAATAAAAAATAAAGAAGGCAGCATTCACTTTGTACTAACCATGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAATAAAGAAGGCAGCATTCACTTTGTACTAACCATGTTTTC  300

seq1  TTTGACCACTTAAAATACTTCATATATTGGGAAATAATTTTTGAAGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCACTTAAAATACTTCATATATTGGGAAATAATTTTTGAAGCCTA  350

seq1  CGTCAAGTTTTGGCTTAATGAAGAGCAATTTATTTTCTTGTAGTAAGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAAGTTTTGGCTTAATGAAGAGCAATTTATTTTCTTGTAGTAAGCGA  400

seq1  GAATCATGTGTACCATGATATAAAAAAGACCACATGCATAGAGGCACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGTGTACCATGATATAAAAAAGACCACATGCATAGAGGCACTCT  450

seq1  CGCCCATGGGTGCCTGCAGTATAATTCCATTATTTTTGTGGATGAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCATGGGTGCCTGCAGTATAATTCCATTATTTTTGTGGATGAAGATT  500

seq1  CCAGAGCCCAGCAAGTATGTAACTTACTCCCATTGTCTCAGTAATTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCCAGCAAGTATGTAACTTACTCCCATTGTCTCAGTAATTCTGG  550

seq1  TGTTTGATGGGGACTAAAGGACTTTAGCCTCTCTCTGTCTATCTCCGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATGGGGACTAAAGGACTTTAGCCTCTCTCTGTCTATCTCCGAAA  600

seq1  TCAGTGACCTTTACCTTGGGTCATTCAACCCTTTCATTTCCACACTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGACCTTTACCTTGGGTCATTCAACCCTTTCATTTCCACACTTACT  650

seq1  GGAGTCAAAGAACATTTTATGGCTAGAGTTTTATCCAAGTTCATGTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAAAGAACATTTTATGGCTAGAGTTTTATCCAAGTTCATGTCCAG  700

seq1  GCTCTACCAGCTGGGTATCTAAAGCAATTTCTGGGAATCAAAGTTAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTACCAGCTGGGTATCTAAAGCAATTTCTGGGAATCAAAGTTAACTC  750

seq1  AATCGAATTTAGAACCAATTTGTTTCCATTCTCTTGAGGAAGAAATGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGAATTTAGAACCAATTTGTTTCCATTCTCTTGAGGAAGAAATGTGT  800

seq1  CAGCTATTACCATTCTTACCATCAGACCTTATCACTTTCAAAGACCACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTACCATTCTTACCATCAGACCTTATCACTTTCAAAGACCACAA  850

seq1  CTTGCCCTATCTTCAATCTGGTCCTGAATGCTTACTGATTTTTTTCATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCTATCTTCAATCTGGTCCTGAATGCTTACTGATTTTTTTCATTC  900

seq1  TAAGCCCGAGGTTGCGAGGCTCAAAGTTTTGATGTACTAACACATAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCCGAGGTTGCGAGGCTCAAAGTTTTGATGTACTAACACATAAATA  950

seq1  AAAATATTAACTTTACATAAGAGACACTTAAATTT-GGTATAATATTTTA  999
      ||||||||||||||||||||||||||||||||||| ||||| ||| ||||
seq2  AAAATATTAACTTTACATAAGAGACACTTAAATTTGGGTAT-ATA-TTTA  998

seq1  GAATTGAGATCAATGTTGGTTATTCTTAATACTCACTTTTTTCATTAATT  1049
      | ||||||||| ||||||||   |||  |||||||| ||||||| |||||
seq2  G-ATTGAGATC-ATGTTGGT--ATCT--ATACTCAC-TTTTTCA-TAATT  1040

seq1  TATTCATTTGTTCACTTTACATTCCCATCAAAACCCTCTCCTTTCTCTAC  1099
      || ||||||| |||| ||||||  ||||| ||||||||| | ||||||||
seq2  TA-TCATTTG-TCAC-TTACAT--CCATC-AAACCCTCT-CGTTCTCTAC  1083

seq1  TCTCAGTCTCACCCTCACAAGCCCCTCCTCTTATTACTTCTCCACTCTTT  1149
      |||||||||||||||||||    ||| |||||| ||||||| ||||||| 
seq2  TCTCAGTCTCACCCTCACA---GCCTTCTCTTA-TACTTCT-CACTCTT-  1127

seq1  CTCAGAGCTTTACCATCATGC  1170
       || ||||||   ||||||||
seq2  -TCCGAGCTT--ACATCATGC  1145


seq1: chr9_33679161_33680257
seq2: B6Ng01-279B03.g_64_1153 (reverse)

seq1  TGTGTAGGTTTAGACCAACCTTTTCACCTTCTCTCAGTCAGTATTCATGC  50
      |||||||| ||||||  ||| ||||||  |||| ||||||||||||||| 
seq2  TGTGTAGGGTTAGAC--ACC-TTTCACTCTCTC-CAGTCAGTATTCATG-  45

seq1  CCAGACTCTGGTAAGCATCATTTGACTTCCTATCCTTGTGTGTTTAACAT  100
      |||||||||||||||||||| ||||||| |||||| |||||| |||||| 
seq2  CCAGACTCTGGTAAGCATCA-TTGACTT-CTATCC-TGTGTG-TTAACAA  91

seq1  TGTTAGAACCCATGTGCTATGTCCTTTTCTAGGCTCAGTTTATTTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAACCCATGTGCTATGTCCTTTTCTAGGCTCAGTTTATTTTATAT  141

seq1  CGCATAACAGCTCCCAGATTGACTCATGCTCTCC-AAAAAGACTAGCC-T  198
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  CGCATAACAGCTCCCAGATTGACTCATGCTCTCCAAAAAAGACTAGCCTT  191

seq1  TCCCCCTTTTCCTCACTGGACATTGTTCCATTGTACGTATGGAGTATGAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTTTCCTCACTGGACATTGTTCCATTGTACGTATGGAGTATGAC  241

seq1  CTACTATTCTTTCACCCTTTGATAACACTTAAGCTTTTGCTATTCTGCAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATTCTTTCACCCTTTGATAACACTTAAGCTTTTGCTATTCTGCAT  291

seq1  CTGTGAACTATATTTCAGCAAACCTGGAAATACAGGTGTATCTTCCATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAACTATATTTCAGCAAACCTGGAAATACAGGTGTATCTTCCATAT  341

seq1  ATTGATTTTTTACTCCTTTGTCTACAATCCCAGATATAGGTTTCCTAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTTTACTCCTTTGTCTACAATCCCAGATATAGGTTTCCTAGAT  391

seq1  CATATTGTAGTTCTATTCTCAGTGTTTTTTTTTCCTTGAGTGATTTACAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTAGTTCTATTCTCAGTGTTTTTTTTTCCTTGAGTGATTTACAC  441

seq1  ATCATTTTATATAATGATTCTGCTCATTTACTTTCTCACAAATAATATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTATATAATGATTCTGCTCATTTACTTTCTCACAAATAATATCA  491

seq1  GCATCCTCTCCTACTATGTCTTTCGTCTTTTAATAAAAGACTATTGGAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCTCCTACTATGTCTTTCGTCTTTTAATAAAAGACTATTGGAAG  541

seq1  GCCATTTTAAAATAGAGTCTTATATGTAACTACAATGTGTAATAGCAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTAAAATAGAGTCTTATATGTAACTACAATGTGTAATAGCAATT  591

seq1  GAAGTAGTGGTGTTCTAATTACATTGGGCATCTCACTTACTAGAAGGCCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGTGGTGTTCTAATTACATTGGGCATCTCACTTACTAGAAGGCCA  641

seq1  GAAATACGGATCTTCTAATGCCTCACAATTGAAACCTCATCTCCTAAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACGGATCTTCTAATGCCTCACAATTGAAACCTCATCTCCTAAAAC  691

seq1  ACTCAGCTTGAAAGTATTTGCACTGAAGATTTCTCAGTTCCCTTCCAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTTGAAAGTATTTGCACTGAAGATTTCTCAGTTCCCTTCCAATA  741

seq1  CTAAAACTAACATTGTCAGTGAGACTGGGGGGGGGTGACAATGGCCCATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTAACATTGTCAGTGAGACTGGGGGGGGGTGACAATGGCCCATT  791

seq1  GGACACAGAGTGGCCAGAGAAAAACATGGAGTGGCTCTTGTGTACATCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAGAGTGGCCAGAGAAAAACATGGAGTGGCTCTTGTGTACATCTG  841

seq1  CTCTTCCTGGTCCACTTTTCAGTGCACTAAATTACTAGACTTGTGGTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCTGGTCCACTTTTCAGTGCACTAAATTACTAGACTTGTGGTTGT  891

seq1  CTTCAGACTGAAAGTAGTAATGAGTAGTAACATCTGAGTTATAGGTTTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGACTGAAAGTAGTAATGAGTAGTAACATCTGAGTTATAGGTTTGA  941

seq1  TAATGTTCAGAATGCCTTGACAAATCATCTAATATGTCTGGATTTCCACG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCAGAATGCCTTGACAAATCATCTAATATGTCTGGATTTCCACG  991

seq1  TGAGCTATGGATTATTCACCTGTCCCACATGATCAGGGGACTCAATTCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATGGATTATTCACCTGTCCCACATGATCAGGGGACTCAATTCCC  1041

seq1  CCCAACAAGCTGGATGACTACACTGAGAGAAGTGAACCATTAAGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAAGCTGGATGACTACACTGAGAGAAGTGAACCATTAAGAATTC  1090


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