BAC Information

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BAC

Clone NameB6Ng01-279G13
Chromosome9 (Build37)
Map Location 110,515,725 - 110,676,424
singlet/doubletdoublet
Overlap geneSetd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3
Upstream geneEG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9
Downstream gene9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279G13.bB6Ng01-279G13.g
ACCGA079398GA079399
length1,1741,161
definitionB6Ng01-279G13.b B6Ng01-279G13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,675,159 - 110,676,424)(110,515,725 - 110,516,865)
sequence
gaattcacactatagaccaggctggccttgaactcagagatccacctgcc
tctgcctcccaagagctaggattaaaggtgcgcaccaccactgcctggct
cttttttttttaaagatttatttatttattttatgtatgtgagtacactg
cagctgtcttcagacacaccagaagagggcattgaatcccattacagatg
gttgtgagacaccatgtggttgctgggaattgaactcaggacctctggaa
gagcagtcagtgtccttacccactgagccagctcaccagcccaaaccctt
cctttcttaagtaacatttctcaggaagcttctcagagcagcaagaaggg
tagtggctaatacacttctcaaaccacacgccatgttcccaggacccacc
tccaacaagcctaggatgcctctgcctgatcgatagacacaggaagccct
gtggggcaagagctgctgtatcacagagatgagatgctctctccctccca
cctccaggtcaaggaaagcactctgacagcctcatgcagatggggagtgg
tgtctttaagggagatctagaagtaccagccgagaggcaggcattcttgg
aggaggacccatgtacctccctgactgacatatggtaacctggcaacagg
ggcacttcttgcctagaattgactaaaagcagtacatttcctgctcagga
ctgctccccaaagtggacctcaccagcgggaaaatgttaaggtcacccaa
gccagtcctgtacaggaccatccatgtaccagaattctcttcccttggaa
gactaagtcaggtatgatgacacatgtctgtaatcccagccctaggaggc
tgagacaggaggatcaccacaagtttgaggacagtcagggctacctaatg
agtcttgattttttttaattatgtatttttactttatgtgcattggtgtt
taccttcatgtatgtctgtatgagggtgtcggatcttgatttacataagt
tgtgagctgccatgtgggtgctgggaaatggaacccagtcctccagagtg
cagtcagtgcttctttaacagctgagccatccttcaacccaagtcttgga
tttcaaaatggaggaagacctgaaggtactcgtggaatgttctcgcttct
aatgtgtggccttgagcttggact
gaattctggatctctggctgcctgatattttactgagtggcatgcatatt
acaggggagactgtgatcagtctcaaggcaagctgtgtgacacacttgta
agcccagtgctcatgagcctgaggcagaaggaactgcaaatcaaaataga
gtttcttatgggttttgtttcagtttttctctagaaaagagggagggggg
tctatttactcagccccacctcccatacagccagaggagaggaaagaaat
agcaaatatatatgtaaagcctttctaactaaccatctctggacaatcca
aaaggcactttttttctgaagcaagtataagcagagggacttgcagggct
tcctcaacacagagtcttggcaagagagaactgcagaatagagcttgggt
atcaaaaactgcattactctaaacccctagtgaaaatgtgaacagggctt
ggagagaaggcttactggttaagagcacttaactgtcctgcagtggacct
gagtcaatttccagaagcacattgaatgggtcacatccgagtctagttcc
gagggaatctgagcctctgcttctgtggatgcccacactcagtacacata
cctacacatgcacacgcacacatattcataattaaagataataaaaatag
ggactagagccgggcagtggtgctgtgcacctttaatcccagctctcagg
ggggcagaggttagtgaatctctgtggatctctgcctggtgtagacaccc
agttcccgaacagccaaggctacataaccctgtctcaaaaaatacctgtt
ggctctagctgagcagatataactctaggtataaattcagatgtatataa
ataaatcttttttttttaattagaaacataaatagcaccagctgatattc
ctagaattatgaaagtttgtgttccaagaggaatgttcataattaatttt
ttttccatgggaaagggcattctagttatgcaacatgggcttgtatgctg
gggctgaatagctcatgaaccttcttgggtcttgcccttgataagagtaa
tttagggttatcctctctccctggccatgcctgaaagttgtattttctga
aatttcttgcccacttagaaaagggaattatggcctagtcatctacgcat
ctgtttcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110675159_110676424
seq2: B6Ng01-279G13.b_48_1221 (reverse)

seq1  AGTCCAAGCTGGGAGCAACTCCAATGTGGACGGACGGACAAACTGCCCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAAACACATAAAAGAACGCTGCAGCTCTGAGGAG--CAAACCCAGGGCCA  98
                                      ||  ||| | || |||||
seq2  --------------------------------AGTCCAAGCTCAAGGCCA  18

seq1  CACATTTTGGAGGCAAGAACTATTCAACCGAGTCCCTCAGTCTTTTCTTT  148
      ||||  || || || ||||| |||| | ||||| |||   ||   |||| 
seq2  CACA--TTAGAAGCGAGAAC-ATTCCA-CGAGTACCT---TCAGGTCTTC  61

seq1  C-CTTTTTTTAAAATCAAGACTTGGGGTTGGAGAGATGGCTCAGCTGTTA  197
      | |  |||| |||  |||||||| |||||| || ||||||||||||||||
seq2  CTCCATTTTGAAATCCAAGACTT-GGGTTGAAG-GATGGCTCAGCTGTTA  109

seq1  A--GAGCACTGGCTGCACTTCTGGAGAACCTGGGTT-CAATTCCCAGCAC  244
      |   ||||||| |||||| ||||||| | ||||||| || ||||||||| 
seq2  AAGAAGCACTGACTGCAC-TCTGGAGGA-CTGGGTTCCATTTCCCAGCA-  156

seq1  CCCACATGGCAGCTCACAACTTTATGTAAATCCAAGATCCGACACCCTCA  294
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  CCCACATGGCAGCTCACAAC-TTATGTAAAT-CAAGATCCGACACCCTCA  204

seq1  TACAGACATACATGAAGGTAAAACACCAATGCACATAAAAGTAAAAATAC  344
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TACAGACATACATGAAGGT-AAACACCAATGCACAT-AAAGTAAAAATAC  252

seq1  ATAATTAAAAAAAATCAAGACTCATTAGGTAGCCCTGACTGTCCTCAAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAAAAAAATCAAGACTCATTAGGTAGCCCTGACTGTCCTCAAAC  302

seq1  TTGTGGTGATCCTCCTGTCTCAGCCTCCTAGGGCTGGGATTACAGACATG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGTGATCCTCCTGTCTCAGCCTCCTAGGGCTGGGATTACAGACATG  352

seq1  TGTCATCATACCTGACTTAGTCTTCCAAGGGAAGAGAATTCTGGTACATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCATACCTGACTTAGTCTTCCAAGGGAAGAGAATTCTGGTACATG  402

seq1  GATGGTCCTGTACAGGACTGGCTTGGGTGACCTTAACATTTTCCCGCTGG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCCTGTACAGGACTGGCTTGGGTGACCTTAACATTTTCCCGCTGG  452

seq1  TGAGGTCCACTTTGGGGAGCAGTCCTGAGCAGGAAATGTACTGCTTTTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCACTTTGGGGAGCAGTCCTGAGCAGGAAATGTACTGCTTTTAG  502

seq1  TCAATTCTAGGCAAGAAGTGCCCCTGTTGCCAGGTTACCATATGTCAGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTAGGCAAGAAGTGCCCCTGTTGCCAGGTTACCATATGTCAGTC  552

seq1  AGGGAGGTACATGGGTCCTCCTCCAAGAATGCCTGCCTCTCGGCTGGTAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTACATGGGTCCTCCTCCAAGAATGCCTGCCTCTCGGCTGGTAC  602

seq1  TTCTAGATCTCCCTTAAAGACACCACTCCCCATCTGCATGAGGCTGTCAG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATCTCCCTTAAAGACACCACTCCCCATCTGCATGAGGCTGTCAG  652

seq1  AGTGCTTTCCTTGACCTGGAGGTGGGAGGGAGAGAGCATCTCATCTCTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTTCCTTGACCTGGAGGTGGGAGGGAGAGAGCATCTCATCTCTGT  702

seq1  GATACAGCAGCTCTTGCCCCACAGGGCTTCCTGTGTCTATCGATCAGGCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAGCAGCTCTTGCCCCACAGGGCTTCCTGTGTCTATCGATCAGGCA  752

seq1  GAGGCATCCTAGGCTTGTTGGAGGTGGGTCCTGGGAACATGGCGTGTGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATCCTAGGCTTGTTGGAGGTGGGTCCTGGGAACATGGCGTGTGGT  802

seq1  TTGAGAAGTGTATTAGCCACTACCCTTCTTGCTGCTCTGAGAAGCTTCCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGTGTATTAGCCACTACCCTTCTTGCTGCTCTGAGAAGCTTCCT  852

seq1  GAGAAATGTTACTTAAGAAAGGAAGGGTTTGGGCTGGTGAGCTGGCTCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGTTACTTAAGAAAGGAAGGGTTTGGGCTGGTGAGCTGGCTCAG  902

seq1  TGGGTAAGGACACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAGGACACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAG  952

seq1  CAACCACATGGTGTCTCACAACCATCTGTAATGGGATTCAATGCCCTCTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATGGTGTCTCACAACCATCTGTAATGGGATTCAATGCCCTCTT  1002

seq1  CTGGTGTGTCTGAAGACAGCTGCAGTGTACTCACATACATAAAATAAATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGTCTGAAGACAGCTGCAGTGTACTCACATACATAAAATAAATA  1052

seq1  AATAAATCTTTAAAAAAAAAAGAGCCAGGCAGTGGTGGTGCGCACCTTTA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTTAAAAAAAAAAGAGCCAGGCAGTGGTGGTGCGCACCTTTA  1102

seq1  ATCCTAGCTCTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTTCAAGGCCA  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGCTCTTGGGAGGCAGAGGCAGGTGGATCTCTGAGTTCAAGGCCA  1152

seq1  GCCTGGTCTATAGTGTGAATTC  1266
      ||||||||||||||||||||||
seq2  GCCTGGTCTATAGTGTGAATTC  1174

seq1: chr9_110515725_110516865
seq2: B6Ng01-279G13.g_66_1226

seq1  GAATTCTGGATCTCTGGCTGCCTGATATTTTACTGAGTGGCATGCATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGATCTCTGGCTGCCTGATATTTTACTGAGTGGCATGCATATT  50

seq1  ACAGGGGAGACTGTGATCAGTCTCAAGGCAAGCTGTGTGACACACTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAGACTGTGATCAGTCTCAAGGCAAGCTGTGTGACACACTTGTA  100

seq1  AGCCCAGTGCTCATGAGCCTGAGGCAGAAGGAACTGCAAATCAAAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGCTCATGAGCCTGAGGCAGAAGGAACTGCAAATCAAAATAGA  150

seq1  GTTTCTTATGGGTTTTGTTTCAGTTTTTCTCTAGAAAAGAGGGAGGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTATGGGTTTTGTTTCAGTTTTTCTCTAGAAAAGAGGGAGGGGGG  200

seq1  TCTATTTACTCAGCCCCACCTCCCATACAGCCAGAGGAGAGGAAAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTACTCAGCCCCACCTCCCATACAGCCAGAGGAGAGGAAAGAAAT  250

seq1  AGCAAATATATATGTAAAGCCTTTCTAACTAACCATCTCTGGACAATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATATATATGTAAAGCCTTTCTAACTAACCATCTCTGGACAATCCA  300

seq1  AAAGGCACTTTTTTTCTGAAGCAAGTATAAGCAGAGGGACTTGCAGGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACTTTTTTTCTGAAGCAAGTATAAGCAGAGGGACTTGCAGGGCT  350

seq1  TCCTCAACACAGAGTCTTGGCAAGAGAGAACTGCAGAATAGAGCTTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACACAGAGTCTTGGCAAGAGAGAACTGCAGAATAGAGCTTGGGT  400

seq1  ATCAAAAACTGCATTACTCTAAACCCCTAGTGAAAATGTGAACAGGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAACTGCATTACTCTAAACCCCTAGTGAAAATGTGAACAGGGCTT  450

seq1  GGAGAGAAGGCTTACTGGTTAAGAGCACTTAACTGTCCTGCAGTGGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAGGCTTACTGGTTAAGAGCACTTAACTGTCCTGCAGTGGACCT  500

seq1  GAGTCAATTTCCAGAAGCACATTGAATGGGTCACATCCGAGTCTAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATTTCCAGAAGCACATTGAATGGGTCACATCCGAGTCTAGTTCC  550

seq1  GAGGGAATCTGAGCCTCTGCTTCTGTGGATGCCCACACTCAGTACACATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAATCTGAGCCTCTGCTTCTGTGGATGCCCACACTCAGTACACATA  600

seq1  CCTACACATGCACACGCACACATATTCATAATTAAAGATAATAAAAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACACATGCACACGCACACATATTCATAATTAAAGATAATAAAAATAG  650

seq1  GGACTAGAGCCGGGCAGTGGTGCTGTGCACCTTTAATCCCAGCTCTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGAGCCGGGCAGTGGTGCTGTGCACCTTTAATCCCAGCTCTCAGG  700

seq1  GGGGCAGAGGTTAGTGAATCTCTGTGGATCTCTGCCTGGTGTAGACACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGAGGTTAGTGAATCTCTGTGGATCTCTGCCTGGTGTAGACACCC  750

seq1  AGTTCCCGAACAGCCAAGGCTACATAACCCTGTCTCAAAAAATACCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCGAACAGCCAAGGCTACATAACCCTGTCTCAAAAAATACCTGTT  800

seq1  GGCTCTAAGCTGAGCAGATATAACTCTAGGTATAAATTCAGATGTATATA  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCT-AGCTGAGCAGATATAACTCTAGGTATAAATTCAGATGTATATA  849

seq1  AATAAATC-TTTTTTTTTAATTAGAAACAT-AATAGCACCAGCTGATATT  898
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  AATAAATCTTTTTTTTTTAATTAGAAACATAAATAGCACCAGCTGATATT  899

seq1  CCTAGAA-TATGAAAGTTTGTGTTCCAAGAGGAATGTTCATAATTA--TT  945
      ||||||| ||||||||||||||||||||||||||||||||||||||  ||
seq2  CCTAGAATTATGAAAGTTTGTGTTCCAAGAGGAATGTTCATAATTAATTT  949

seq1  TTTTTCCATGGG-AAGGGCATTCTAG-TATGC-ACAT-GGCTTGTATGCT  991
      |||||||||||| ||||||||||||| ||||| |||| ||||||||||||
seq2  TTTTTCCATGGGAAAGGGCATTCTAGTTATGCAACATGGGCTTGTATGCT  999

seq1  GGGGCTG-ATAGCTCATGA--CCTCTT-GGTCTTGCC--TGGTTAGAGTA  1035
      ||||||| |||||||||||  | |||| |||||||||  || | ||||||
seq2  GGGGCTGAATAGCTCATGAACCTTCTTGGGTCTTGCCCTTGATAAGAGTA  1049

seq1  A-TTAGG--TATCCTCT---CCTGGCATTGCTAGAAAGGTGTA-TTTCTG  1078
      | |||||  ||||||||   ||||||  |||  ||||| |||| ||||||
seq2  ATTTAGGGTTATCCTCTCTCCCTGGCCATGCCTGAAAGTTGTATTTTCTG  1099

seq1  -AATTTCTTG-CCACTTTGGAAAAAGGGTATTAGTGGTCTTAGCATCTAC  1126
       ||||||||| |||||| |  ||||||| |||| ||| ||   |||||||
seq2  AAATTTCTTGCCCACTTAG--AAAAGGGAATTA-TGGCCTAGTCATCTAC  1146

seq1  GCATCTGTTCCCTGA  1141
      ||||||||| |||||
seq2  GCATCTGTTTCCTGA  1161