BAC Information

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BAC

Clone NameB6Ng01-279H01
Chromosome9 (Build37)
Map Location 59,420,396 - 59,539,798
singlet/doubletdoublet
Overlap geneBrunol6, Parp6, Pkm2, 4933407I18Rik
Upstream geneNptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa
Downstream geneGramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279H01.bB6Ng01-279H01.g
ACCGA079422GA079423
length5881,015
definitionB6Ng01-279H01.b B6Ng01-279H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,420,396 - 59,420,988)(59,538,795 - 59,539,798)
sequence
aaaacaagagccttgtacctgctaaacaagcagtctaccatggaggtaca
ctttttttttttttaagatttatttattatatgtaagtacactgtagttg
tcttcagatacaccagaagagggcatcagatctcattatgagtggttgtg
agccaccatgtggttgctgggatttgaacttcggaccttcgaaagagcag
tcgggtgcccttacccactgagccatctcaccagccccggaggtacactt
ttaagacctcagtttttatttattttttaatttctatttatttattttgt
ttttttaagacagggtttttctgtataatcctgtctgtcctggaactctc
tctgtagaccaggctggcctctgcctcctgagggttgagattaaggcaca
catggtctgtggcaccatgctaggctaatatcccaatttttaaattgttg
aatttggaaaggattttaaagtaactgaaagaataaaaatccaagagtaa
caaacttttttttttcttttgtttttctgttttttcgagacagggttttc
tctgtgtagccctggctgtcctggaactcactttgtag
gaattccagtaccacacttagtggttcccaaggcggcgcctgcagcgaca
ctgatcgcgtcagtatggcgcggtccggccctctgccagctggggagtcg
agctggtagcagagtagatcgggagacctgacgtgagagagggagcagcg
tccccaccaaccagcttcccgggatgctgagcccgcgctgggctcctgga
gtggtgcccagtaccagagctggcagctggccgcgactgtgcacacccct
ggcagggctggagtccacaccctgccgcaggctctcgacaacgtggctcc
ccaggcagattcctgaccaatgatctagtcttgagcagcttgctgggtcc
tggggcctcttccccagggagcaccctatactatgtaattgataaaaagt
cctagggagtgccagctcttgtcactgttaattcaacctttggaggttgt
agctattgtacaaaggtgagaagtataaagatttatgtattaaaaaaatt
gacaatgtaagaaaaacctagggggttggtgagatggcctaatcggtaag
aacgctttcacgtaagaatgagggcttcagtcaggcggatttctaagttc
gaagctagcctggtctacagagtgagtttcagggcagccagagttataca
gagaaaccctgtcttgaaaaaaacaaaaaaacaaaaaagaaaagaaggaa
ggaaggaagaaaaaagaatgagggcttcaatttgatctggagagaggaga
cggagagcaattgaggccgacacttgacctctgaatcaagtgaacgagag
caagcagacacacacacatgcacaggaagagacagagaaactgtgatact
ttgacccatacataaaaacacagtaagagatgccccccccgccccactgg
gggatgcctcacacacattagcaaagaattctaccgagcccacccaacct
acaccccttagcccttaaggagttcattactgtttctaatttgttacaag
agccaaccacagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59420396_59420988
seq2: B6Ng01-279H01.b_44_637

seq1  GAATTCAAAACAAGAGCCTTGTACCTGCTAAACAAGCAGTCTACCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAAGAGCCTTGTACCTGCTAAACAAGCAGTCTACCATGGA  50

seq1  GGTACACTTTTTTTTTTTTTAAGATTTATTTATTATATGTAAGTACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACTTTTTTTTTTTTTAAGATTTATTTATTATATGTAAGTACACTG  100

seq1  TAGTTGTCTTCAGATACACCAGAAGAGGGCATCAGATCTCATTATGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTCTTCAGATACACCAGAAGAGGGCATCAGATCTCATTATGAGTG  150

seq1  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTTCGGACCTTCGAAA  200

seq1  GAGCAGTCGGGTGCCCTTACCCACTGAGCCATCTCACCAGCCCCGGAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCGGGTGCCCTTACCCACTGAGCCATCTCACCAGCCCCGGAGGT  250

seq1  ACACTTTTAAGACCTCAGTTTTTATTTATTTTTTAATTTCTATTTATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTTAAGACCTCAGTTTTTATTTATTTTTTAATTTCTATTTATTTA  300

seq1  TTTTGTTTTTTTAAGACAGGGTTTTTCTGTATAATCCTGTCTGTCCTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTTTAAGACAGGGTTTTTCTGTATAATCCTGTCTGTCCTGGA  350

seq1  ACTCTCTCTGTAGACCAGGCTGGCCTCTGCCTCCTGAGGGTTGAGATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTCTGTAGACCAGGCTGGCCTCTGCCTCCTGAGGGTTGAGATTAA  400

seq1  GGCACACATGGTCTGTGGCACCATGCTAGGCTAATATCCCAATTTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACATGGTCTGTGGCACCATGCTAGGCTAATATCCCAATTTTTAAA  450

seq1  TTGTTGAATTTGGAAAGGATTTTAAAGTAACTGAAAGAATAAAAATCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAATTTGGAAAGGATTTTAAAGTAACTGAAAGAATAAAAATCCAA  500

seq1  GAGTAACAAACTTTTTTTTTTCTTTTGTTTTTCTGTTTTTTCGAGACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAACAAACTTTTTTTTTTCTTTTGTTTTTCTGTTTTTTCGAGACAGG  550

seq1  G-TTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  593
      | ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAG  594

seq1: chr9_59538795_59539798
seq2: B6Ng01-279H01.g_68_1082 (reverse)

seq1  TTTCTGTG--TTGCTCTTGTAAC-AATTAG-AACAGTAATGAACTC--TT  44
      ||||||||  | ||||||||||| |||||| |||||||||||||||  | 
seq2  TTTCTGTGGTTGGCTCTTGTAACAAATTAGAAACAGTAATGAACTCCTTA  50

seq1  AGGGCT-AGGGGTGTA-GTTGGGTGGGCT-GGTAGAATCCTTGCCTAATG  91
      |||||| ||||||||| |||||||||||| |||||||| |||  ||||||
seq2  AGGGCTAAGGGGTGTAGGTTGGGTGGGCTCGGTAGAATTCTTTGCTAATG  100

seq1  TGTGTGAGGCATCCCCCAGTGGG--CGGGGGGGCATCTCTTACTGTGTTT  139
      |||||||||||||||||||||||   ||||||||||||||||||||| ||
seq2  TGTGTGAGGCATCCCCCAGTGGGGCGGGGGGGGCATCTCTTACTGTG-TT  149

seq1  TTTATGTAT-GGTCAAAGTATCACAGTTTCTCTGTCTCTTCCTGTGCATG  188
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTATGGGTCAAAGTATCACAGTTTCTCTGTCTCTTCCTGTGCATG  199

seq1  TGTGTGTGTCTGCTTGCTCTCGTTCACTTGATTCAGAGGTCAAGTGTCGG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTGCTTGCTCTCGTTCACTTGATTCAGAGGTCAAGTGTCGG  249

seq1  CCTCAATTGCTCTCCGTCTCCTCTCTCCAGATCAAATTGAAGCCCTCATT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATTGCTCTCCGTCTCCTCTCTCCAGATCAAATTGAAGCCCTCATT  299

seq1  CTTTTTTCTTCCTTCCTTCCTTCTTTTCTTTTTTGTTTTTTTGTTTTTTT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTCCTTCCTTCCTTCTTTTCTTTTTTGTTTTTTTGTTTTTTT  349

seq1  CAAGACAGGGTTTCTCTGTATAACTCTGGCTGCCCTGAAACTCACTCTGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGGGTTTCTCTGTATAACTCTGGCTGCCCTGAAACTCACTCTGT  399

seq1  AGACCAGGCTAGCTTCGAACTTAGAAATCCGCCTGACTGAAGCCCTCATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTAGCTTCGAACTTAGAAATCCGCCTGACTGAAGCCCTCATT  449

seq1  CTTACGTGAAAGCGTTCTTACCGATTAGGCCATCTCACCAACCCCCTAGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTGAAAGCGTTCTTACCGATTAGGCCATCTCACCAACCCCCTAGG  499

seq1  TTTTTCTTACATTGTCAATTTTTTTAATACATAAATCTTTATACTTCTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTACATTGTCAATTTTTTTAATACATAAATCTTTATACTTCTCA  549

seq1  CCTTTGTACAATAGCTACAACCTCCAAAGGTTGAATTAACAGTGACAAGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTACAATAGCTACAACCTCCAAAGGTTGAATTAACAGTGACAAGA  599

seq1  GCTGGCACTCCCTAGGACTTTTTATCAATTACATAGTATAGGGTGCTCCC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCACTCCCTAGGACTTTTTATCAATTACATAGTATAGGGTGCTCCC  649

seq1  TGGGGAAGAGGCCCCAGGACCCAGCAAGCTGCTCAAGACTAGATCATTGG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAGAGGCCCCAGGACCCAGCAAGCTGCTCAAGACTAGATCATTGG  699

seq1  TCAGGAATCTGCCTGGGGAGCCACGTTGTCGAGAGCCTGCGGCAGGGTGT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATCTGCCTGGGGAGCCACGTTGTCGAGAGCCTGCGGCAGGGTGT  749

seq1  GGACTCCAGCCCTGCCAGGGGTGTGCACAGTCGCGGCCAGCTGCCAGCTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCAGCCCTGCCAGGGGTGTGCACAGTCGCGGCCAGCTGCCAGCTC  799

seq1  TGGTACTGGGCACCACTCCAGGAGCCCAGCGCGGGCTCAGCATCCCGGGA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTGGGCACCACTCCAGGAGCCCAGCGCGGGCTCAGCATCCCGGGA  849

seq1  AGCTGGTTGGTGGGGACGCTGCTCCCTCTCTCACGTCAGGTCTCCCGATC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTTGGTGGGGACGCTGCTCCCTCTCTCACGTCAGGTCTCCCGATC  899

seq1  TACTCTGCTACCAGCTCGACTCCCCAGCTGGCAGAGGGCCGGACCGCGCC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGCTACCAGCTCGACTCCCCAGCTGGCAGAGGGCCGGACCGCGCC  949

seq1  ATACTGACGCGATCAGTGTCGCTGCAGGCGCCGCCTTGGGAACCACTAAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACGCGATCAGTGTCGCTGCAGGCGCCGCCTTGGGAACCACTAAG  999

seq1  TGTGGTACTGGAATTC  1004
      ||||||||||||||||
seq2  TGTGGTACTGGAATTC  1015