BAC Information

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BAC

Clone NameB6Ng01-279L06
Chromosome9 (Build37)
Map Location 60,857,709 - 60,858,836
singlet/doubletsinglet
Overlap geneA430102L10
Upstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143
Downstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279L06.bB6Ng01-279L06.g
ACCGA079619GA079620
length1,1411,186
definitionB6Ng01-279L06.b B6Ng01-279L06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gggctgtgccagctcagaatcgctgggcagtgctggctctatggatggta
acatacagaagggaaagctataaaccctgtcaagggggctcaggcaaagt
gatgctaagtgaggggcagagctcggcaggcagctgggcaggaggaatag
agactgatctgactaagctcagagcatagtgtagggtgagctatggagaa
gaagggctagaagtgaaagagatggcatcagagtcggggctgaaggtgac
accctgatgaggagatcttaaactggcgctcacagggatggctgataagc
ttcagtctgcttttactcccatgatgctcctgtagcagtcattgatagtc
aatggttttcaagtaccatccttgaatttttctgggagccaggattagct
aatgggcattagtgtgtagaagttcctttcttctctccatcctcttcgat
ctcctcctcttccttccattcccccccccacctctcccttctcctccctc
tcctgctttctttctgttttaaattagtgtatattgcttgtatgaaatga
tggatttcatcgtgggaatttcacgcgtgtatttgatatccgttgatcat
atcaatactctctaatggctagtcttaccttactccccctttcctggtgc
cgttcttccttaatggccccctttcttctcccatgtgttatttgcttatt
ttctatatgagaaaggacgcattatctttcttagtctgccgtattttgat
cgtcttaatgatctttggtcccatccattttctgcaaacatcattttgtc
tcatggctgaataaaacccagacagacagacctagacacacatgcagaca
aatagatacacagagagacacatacacacagagacatagacacatgcaca
tattctttatccatttcaatctgttattgggcacctagactgcttccata
agttggctcgtttggcattgtattgtgaggtatctctgccataactgaat
tttgatcccatctgggggggtgtagctggatcaatgcactaatccaatct
ttgggtttgaagaacctccaggctggactgaatctccacagtcctaacaa
ggttaagaaatcgaacttgcaattggtcagcaatacacaaa
gaattctgacatcagtgaaggaatacctcggagcagcaacaggacagatg
gtcttgccagctagagtgagggcaagcaggcaaacaaagtttctttcttc
catgttcttttatgtgggctgccagcagaaagtgagaccaagatttaggg
atgaatcttcctgctttaaataatccgattaagaaaacctctcccaggag
cgctcagccacttgaacttttagttgattctaaatgcagtcaggttgaca
accaaaacatcataataaccaatcaccctaaaacaatgcagcgatgtaaa
cgaaactggatgactacagccataaatccgtgggatcaggaattttgata
gagccaatggcaatgttttgtctttatcacacactatgcctggagcccca
gccttaaagatttccatacttggtgcaagataaggtagagattaaactgt
tggtagctggagccacccagaggcttcttgatctgtttggtggttaggtt
gcgatatctcaaagtctatgtacaactgaccagttgattagtgtatccga
aatgcatctccatgcatgtgagtttctagcagcatagggactgggatctg
agggagggaggacaaaagagagaattccacaaatctagggttcaagagtc
taaggttgggctcctgaagttccctgggaccatggacaccaggcagggtc
atttctattggttataaactagtgacggaggctagctcccattcaagggg
agacaagttagattccgttccttggtgggaagcggcaagatcacctggca
gaaaaaacgcacgaggtagaagttcctgtcaccaccatcttggaaaccac
accctgttacaagagctgttgttttcattaagcttctgggacatcaatca
ttcaatcaacaaccgacaattgtgaccacaagtgttgatgactatttctg
tcgtgctagttcttaaaccaggagacaggagaggggaagaagggacccta
ctccaatctcctccagcttctgagcttagagagcccagtctgtaagaatg
gatttccgttgagggtcttttaaaagaatgattcatttttatagttttac
tttgtggtgtgggcggggacatatagctgtagtatctggccaacatgctc
ggaagctatccatgtgtcctcgtggacttgtccgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_60857709_60858836
seq2: B6Ng01-279L06.b_54_1194

seq1  GGGCTGTGCCAGCTCAGAATCGCTGGGCAGTGCTGGCTCTATGGATGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGCCAGCTCAGAATCGCTGGGCAGTGCTGGCTCTATGGATGGTA  50

seq1  ACATACAGAAGGGAAAGCTATAAACCCTGTCAAGGGGGCTCAGGCAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGAAGGGAAAGCTATAAACCCTGTCAAGGGGGCTCAGGCAAAGT  100

seq1  GATGCTAAGTGAGGGGCAGAGCTCGGCAGGCAGCTGGGCAGGAGGAATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAGTGAGGGGCAGAGCTCGGCAGGCAGCTGGGCAGGAGGAATAG  150

seq1  AGACTGATCTGACTAAGCTCAGAGCATAGTGTAGGGTGAGCTATGGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGATCTGACTAAGCTCAGAGCATAGTGTAGGGTGAGCTATGGAGAA  200

seq1  GAAGGGCTAGAAGTGAAAGAGATGGCATCAGAGTCGGGGCTGAAGGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTAGAAGTGAAAGAGATGGCATCAGAGTCGGGGCTGAAGGTGAC  250

seq1  ACCCTGATGAGGAGATCTTAAACTGGCGCTCACAGGGATGGCTGATAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGATGAGGAGATCTTAAACTGGCGCTCACAGGGATGGCTGATAAGC  300

seq1  TTCAGTCTGCTTTTACTCCCATGATGCTCCTGTAGCAGTCATTGATAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTGCTTTTACTCCCATGATGCTCCTGTAGCAGTCATTGATAGTC  350

seq1  AATGGTTTTCAAGTACCATCCTTGAATTTTTCTGGGAGCCAGGATTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTTTCAAGTACCATCCTTGAATTTTTCTGGGAGCCAGGATTAGCT  400

seq1  AATGGGCATTAGTGTGTAGAAGTTCCTTTCTTCTCTCCATCCTCTTCGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCATTAGTGTGTAGAAGTTCCTTTCTTCTCTCCATCCTCTTCGAT  450

seq1  CTCCTCCTCTTCCTTCCATTCCCCCCCCCACCTCTCCCTTCTCCTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCTTCCTTCCATTCCCCCCCCCACCTCTCCCTTCTCCTCCCTC  500

seq1  TCCTGCTTTCTTTCTGTTTTAAATTAGTGTATATTGCTTGTATGAAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTCTTTCTGTTTTAAATTAGTGTATATTGCTTGTATGAAATGA  550

seq1  TGGATTTCATCGTGGGAATTTCACGCGTGTATTTGATATCCGTTGATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCATCGTGGGAATTTCACGCGTGTATTTGATATCCGTTGATCAT  600

seq1  ATCAATACTCTCTAATGGCTAGTCTTACCTTACTCCCCCTTTCCTGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATACTCTCTAATGGCTAGTCTTACCTTACTCCCCCTTTCCTGGTGC  650

seq1  CGTTCTTCCTTAATGGCCCCCTTTCTTCTCCCATGTGTTATTTGCTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTCCTTAATGGCCCCCTTTCTTCTCCCATGTGTTATTTGCTTATT  700

seq1  TTCTATATGAGAAAGGACGCATTATCTTTCTTAGTCTGCCGTATTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATGAGAAAGGACGCATTATCTTTCTTAGTCTGCCGTATTTTGAT  750

seq1  CGTCTTAATGATCTTTGGTCCCATCCATTTTCTGCAAACATCATTTTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTAATGATCTTTGGTCCCATCCATTTTCTGCAAACATCATTTTGTC  800

seq1  TCATGGCTGAATAAAACCCAGACAGACAGACCTAGACACACATGCAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCTGAATAAAACCCAGACAGACAGACCTAGACACACATGCAGACA  850

seq1  AATAGATACACAGAGAGACACATACACACAGAGACATAGACACATGCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATACACAGAGAGACACATACACACAGAGACATAGACACATGCACA  900

seq1  TATTCTTTATCCA-TTCAATCTGTTATTGGGCACCTAGACTGCTTCCATA  949
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTATCCATTTCAATCTGTTATTGGGCACCTAGACTGCTTCCATA  950

seq1  AGTTGGCTCGTTT-GCATTGTATTGTGAGGTATCTCTGCCATAACTG-AT  997
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  AGTTGGCTCGTTTGGCATTGTATTGTGAGGTATCTCTGCCATAACTGAAT  1000

seq1  TTTGATCCCATCT--GGGGGTGTAGCTGGATC-ATGCACTAATCCCATCT  1044
      |||||||||||||  ||||||||||||||||| |||||||||||| ||||
seq2  TTTGATCCCATCTGGGGGGGTGTAGCTGGATCAATGCACTAATCCAATCT  1050

seq1  TTGGGTTTTGAAGAACCTCCAGGCT-GACTG-ATCT-CACAGT-CTAAC-  1089
      ||||| ||||||||||||||||||| ||||| |||| |||||| ||||| 
seq2  TTGGG-TTTGAAGAACCTCCAGGCTGGACTGAATCTCCACAGTCCTAACA  1099

seq1  AGGTT---AGATCG-ACTTGCATTCCTTTCAGCAATACACAAA  1128
      |||||   | |||| ||||||| |    |||||||||||||||
seq2  AGGTTAAGAAATCGAACTTGCAAT-TGGTCAGCAATACACAAA  1141