BAC Information

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BAC

Clone NameB6Ng01-280G09
Chromosome9 (Build37)
Map Location 42,119,359 - 42,271,374
singlet/doubletdoublet
Overlap geneTecta, Tbcel
Upstream geneLOC100042464, EG667566, 6720432D03Rik, Sorl1, Sc5d
Downstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280G09.bB6Ng01-280G09.g
ACCGA080136GA080137
length1,1581,144
definitionB6Ng01-280G09.b B6Ng01-280G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,119,359 - 42,120,530)(42,270,250 - 42,271,374)
sequence
gaattcatagaaaaaaagcaaaacaactcaaataaaataggtaacaaaaa
tggacagaaattaatgtggcagaaacatgatttaaaatattaacattagg
gtctggctttttgaaaaataaagtctgttgctgagtgtttgcttttcttc
atgaggtttggggtttggttcccagaacccatgtatggttcctggaaaca
gcctacaattctatctctatggaatcgaacgccctcttctggactctatg
aggactgcatttatgtgcacatattctcacacagacactcacagagatac
agacacaaaaccagacacacacacacacacacacacacacacacacacac
acacgtaattaaaaattaaatcttcaaaaatatagcaaatagctataata
gcttatgacataacatttagattttaattttaacaaaaaaattaaaatag
tctccaggtggtggtggcacacacctttaattccaacacttgggaggcag
aggcaggtgaatctctgagttcaaggccagcctggtctacagagtgagtt
ctaggacagccagtgctacatagaggaacctggtcttgaaaattccaaaa
ataaaataaaatattaaaataaaatttaatttttagttaaaaattaagtt
taattatgttttagttaaaatttaaatttttcatttaaaattgtaaaaaa
tgtaaaaattgacaaattaaaggtcaaaatcaattcaagaagaaatagaa
aattagaagatgttacaactgttaaagaaatttgaataaattcaaattta
ttcctaaaaagaaaattctagatctacgaaggtttttgagggtgaaactt
caaaacaaaacaaagacatttttaataggaaggaattttaagctccaaaa
caattgtggacaaaactagcatatatttctagaactcacaagggcaacat
aattcttttgatcaagaaattccatggagggaatatatgcaaaggagaaa
aacatggagaaattataactattattagcaacatcacaatgtccaaagat
cagtagtatctaattattgtatagtataacagtaattcaggtaaaacctt
aaatttatagtaataattatatgacttatcctctcaatggagagagcatt
caatatgc
gaattcaccacactgcggtttatgtctgaatgagacctgtctaatgggca
tgtttcctccacaaggtacggagagcctcccatgtcttaggaacaaatac
catttcagtattcgtcttgagagacatcttaaatagctacatcagatgca
caaaacccatgaaaagtctagcattgagtagatcctcaaatgggagcttg
tttacagagctggagccagaagtgggagccccaccctgtctgcctcagct
ccaggtactcactcgctaactcctactgtggaccctctgcgtgtatccac
aaataaccacggacattctgaatgttgacctgcagatacatttggcaaac
agatggatctgagacctggaagacatgcagaatgggttggaaagtattga
agataatcttttaggagattgttagcattagagctggccttgccatacac
atcgcagagctgtttatcaggagagaatcacttagttcagtgacgtctac
atgctaagtttcctgattggcttatggcattattgcagtgataaggcttt
cttttcttgaagatgcttttattatgttgataatcacggcattgtcattt
agtccataggcttgaatcaaattaggaaaaatttcaatttctactttttg
aaaacaagtctaaattatttaatccttattgtagtaactcagtgagatta
tatctttcatgatcatctttaataatttaaggcctaaattttataaaggc
aagtaccctttgtgaaaggatatctttcatttgtttagtaatgtgtgtcc
tcatgaaacttaataatgatttacaagaaataaaaaatggagattttatc
cttcacagatctaatctcttctaagtgcatttttagatctcacctatttt
tatccttcaggggagtttgcagaaggtttgttcaagctgacaaggaacgg
caattataaccgttcagacagtttactgtttgggtctccactacttgggc
agcaggtcagcatagttccttggggccctagtagcaagaatcgaaatcta
actgtgcaggtaattttattaagttagccatgcaagcccagtacactcac
ttctgtggtcactcagagtgatgtagtagtggcccgggttagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42119359_42120530
seq2: B6Ng01-280G09.b_42_1199

seq1  GAATTCATAGAAAAAAAGCAAAACAACTCAAATAAAATAGGTAACAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAAAAAAGCAAAACAACTCAAATAAAATAGGTAACAAAAA  50

seq1  TGGACAGAAATTAATGTGGCAGAAACATGATTTAAAATATTAACATTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAAATTAATGTGGCAGAAACATGATTTAAAATATTAACATTAGG  100

seq1  GTCTGGCTTTTTGAAAAATAAAGTCTGTTGCTGAGTGTTTGCTTTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCTTTTTGAAAAATAAAGTCTGTTGCTGAGTGTTTGCTTTTCTTC  150

seq1  ATGAGGTTTGGGGTTTGGTTCCCAGAACCCATGTATGGTTCCTGGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTTTGGGGTTTGGTTCCCAGAACCCATGTATGGTTCCTGGAAACA  200

seq1  GCCTACAATTCTATCTCTATGGAATCGAACGCCCTCTTCTGGACTCTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTACAATTCTATCTCTATGGAATCGAACGCCCTCTTCTGGACTCTATG  250

seq1  AGGACTGCATTTATGTGCACATATTCTCACACAGACACTCACAGAGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGCATTTATGTGCACATATTCTCACACAGACACTCACAGAGATAC  300

seq1  AGACACAAAACCAGACACACACACACACACACACACACACACACACACAC  350
      ||||||||||||||      ||||||||||||||||||||||||||||||
seq2  AGACACAAAACCAG------ACACACACACACACACACACACACACACAC  344

seq1  ACACACACACGTAATTAAAAATTAAATCTTCAAAAATATAGCAAATAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACGTAATTAAAAATTAAATCTTCAAAAATATAGCAAATAGCT  394

seq1  ATAATAGCTTATGACATAACATTTAGATTTTAATTTTAACAAAAAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCTTATGACATAACATTTAGATTTTAATTTTAACAAAAAAATTA  444

seq1  AAATAGTCTCCAGGTGGTGGTGGCACACACCTTTAATTCCAACACTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCTCCAGGTGGTGGTGGCACACACCTTTAATTCCAACACTTGGG  494

seq1  AGGCAGAGGCAGGTGAATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGTGAATCTCTGAGTTCAAGGCCAGCCTGGTCTACAGAG  544

seq1  TGAGTTCTAGGACAGCCAGTGCTACATAGAGGAACCTGGTCTTGAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCTAGGACAGCCAGTGCTACATAGAGGAACCTGGTCTTGAAAATT  594

seq1  CCAAAAATAAAATAAAATATTAAAATAAAATTTAATTTTTAGTTAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATAAAATAAAATATTAAAATAAAATTTAATTTTTAGTTAAAAAT  644

seq1  TAAGTTTAATTATGTTTTAGTTAAAATTTAAATTTTTCATTTAAAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTAATTATGTTTTAGTTAAAATTTAAATTTTTCATTTAAAATTGT  694

seq1  AAAAAATGTAAAAATTGACAAATTAAAGGTCAAAATCAATTCAAGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTAAAAATTGACAAATTAAAGGTCAAAATCAATTCAAGAAGAA  744

seq1  ATAGAAAATTAGAAGATGTTACAACTGTTAAAGAAA-TTGAATAAATTCA  799
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAGAAAATTAGAAGATGTTACAACTGTTAAAGAAATTTGAATAAATTCA  794

seq1  AATTTATTCCTAAAAAGAAAATTCTAGATCTACGAAGG-TTTTGAGGGTG  848
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATTTATTCCTAAAAAGAAAATTCTAGATCTACGAAGGTTTTTGAGGGTG  844

seq1  AAACTTCAAAAACAAAACAAAGACATTTTTAATAGGAAGGAATTTTAAGC  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTC-AAAACAAAACAAAGACATTTTTAATAGGAAGGAATTTTAAGC  893

seq1  TCCAAAAACAATTGTGGACAAAACTAGCATATA-TTCTAGAACTCACAAG  947
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCC-AAAACAATTGTGGACAAAACTAGCATATATTTCTAGAACTCACAAG  942

seq1  GGCAACATAATTCTTTTGATCAAGAAATTCCATGGA-GGAATATATGCAA  996
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGCAACATAATTCTTTTGATCAAGAAATTCCATGGAGGGAATATATGCAA  992

seq1  AGGAG-AAAACATGGAGAAATATAAACTAATTATTAGCAACATCACAATG  1045
      ||||| |||||||||||||||   |||| |||||||||||||||||||||
seq2  AGGAGAAAAACATGGAGAAATTATAACT-ATTATTAGCAACATCACAATG  1041

seq1  TCAAAGAATCAGTAGTAATCTAATTAATGTAATAGTAATAACAGTAATTT  1095
      || ||  ||||||||| ||||||||| ||| ||||| |||||||||| ||
seq2  TCCAAAGATCAGTAGT-ATCTAATTATTGT-ATAGT-ATAACAGTAA-TT  1087

seq1  CAAGTAAAAACCTTAAAAATTAATAGTAATAATTAATAGTAATTATCTCT  1145
      || || ||||||||  ||||| |||||||||||| |||  | ||||| ||
seq2  CAGGT-AAAACCTT--AAATTTATAGTAATAATT-ATATGACTTATC-CT  1132

seq1  CAAAATTGAGAGAAGCATTCAATATGC  1172
      |  ||| ||||| ||||||||||||||
seq2  CTCAATGGAGAG-AGCATTCAATATGC  1158

seq1: chr9_42270250_42271374
seq2: B6Ng01-280G09.g_67_1210 (reverse)

seq1  TACTA--CCCGACCACTACCTACCATCAACTCTGAGTGACCACAGAAGTG  48
      |||||  || | |||||| ||| |||| ||||||||||||||||||||||
seq2  TACTAACCCGGGCCACTA-CTA-CATC-ACTCTGAGTGACCACAGAAGTG  47

seq1  AGTGTACTGGGC-TGCATGGCTTACTT-ATAAAATTA-CTGCACAG-TAG  94
      |||||||||||| ||||||||| |||| ||||||||| |||||||| |||
seq2  AGTGTACTGGGCTTGCATGGCTAACTTAATAAAATTACCTGCACAGTTAG  97

seq1  A-TTCGA-TCTGGCTACTTAGGGCCC--AGG-ACTATGCTGA-CTGCTG-  137
      | ||||| ||| ||||| ||||||||  ||| |||||||||| |||||| 
seq2  ATTTCGATTCTTGCTAC-TAGGGCCCCAAGGAACTATGCTGACCTGCTGC  146

seq1  CCAAGTAGT-GAGA-CCAAACAGTAAACTGTCTG-ACGGTTATAA-TGCC  183
      ||||||||| |||| ||||||||||||||||||| |||||||||| ||||
seq2  CCAAGTAGTGGAGACCCAAACAGTAAACTGTCTGAACGGTTATAATTGCC  196

seq1  GTTCCTTGTCAGCTGGA--CAACCTTCTGCCACCTCCCCTGAAGGAT-AA  230
      |||||||||||||| ||   |||||||||| | |||||||||||||| ||
seq2  GTTCCTTGTCAGCTTGAACAAACCTTCTGCAAACTCCCCTGAAGGATAAA  246

seq1  AATAGGTGAG-TCTAAAAATGCACTTAGAAGAGATTAGATCTGTGAAGGA  279
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTGAGATCTAAAAATGCACTTAGAAGAGATTAGATCTGTGAAGGA  296

seq1  T-AAATCTCCATTTTTTATTTCTTGT-AATCATTATTAAGTTTCATGAGG  327
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TAAAATCTCCATTTTTTATTTCTTGTAAATCATTATTAAGTTTCATGAGG  346

seq1  ACACACATTACTAAACAAATGAAAGATATCCTTTCACAAAGGGTACTTGC  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATTACTAAACAAATGAAAGATATCCTTTCACAAAGGGTACTTGC  396

seq1  CTTTATAAAATTTAGGCCTTAAATTATTAAAGATGATCATGAAAGATATA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAAATTTAGGCCTTAAATTATTAAAGATGATCATGAAAGATATA  446

seq1  ATCTCACTGAGTTACTACAATAAGGATTAAATAATTTAGACTTGTTTTCA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCACTGAGTTACTACAATAAGGATTAAATAATTTAGACTTGTTTTCA  496

seq1  AAAAGTAGAAATTGAAATTTTTCCTAATTTGATTCAAGCCTATGGACTAA  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAGAAATTGAAATTTTTCCTAATTTGATTCAAGCCTATGGACTAA  546

seq1  ATGACAATGCCGTGATTATCAACATAATAAAAGCATCTTCAAGAAAAGAA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGCCGTGATTATCAACATAATAAAAGCATCTTCAAGAAAAGAA  596

seq1  AGCCTTATCACTGCAATAATGCCATAAGCCAATCAGGAAACTTAGCATGT  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTATCACTGCAATAATGCCATAAGCCAATCAGGAAACTTAGCATGT  646

seq1  AGACGTCACTGAACTAAGTGATTCTCTCCTGATAAACAGCTCTGCGATGT  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTCACTGAACTAAGTGATTCTCTCCTGATAAACAGCTCTGCGATGT  696

seq1  GTATGGCAAGGCCAGCTCTAATGCTAACAATCTCCTAAAAGATTATCTTC  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGCAAGGCCAGCTCTAATGCTAACAATCTCCTAAAAGATTATCTTC  746

seq1  AATACTTTCCAACCCATTCTGCATGTCTTCCAGGTCTCAGATCCATCTGT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTCCAACCCATTCTGCATGTCTTCCAGGTCTCAGATCCATCTGT  796

seq1  TTGCCAAATGTATCTGCAGGTCAACATTCAGAATGTCCGTGGTTATTTGT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAATGTATCTGCAGGTCAACATTCAGAATGTCCGTGGTTATTTGT  846

seq1  GGATACACGCAGAGGGTCCACAGTAGGAGTTAGCGAGTGAGTACCTGGAG  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACACGCAGAGGGTCCACAGTAGGAGTTAGCGAGTGAGTACCTGGAG  896

seq1  CTGAGGCAGACAGGGTGGGGCTCCCACTTCTGGCTCCAGCTCTGTAAACA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCAGACAGGGTGGGGCTCCCACTTCTGGCTCCAGCTCTGTAAACA  946

seq1  AGCTCCCATTTGAGGATCTACTCAATGCTAGACTTTTCATGGGTTTTGTG  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCATTTGAGGATCTACTCAATGCTAGACTTTTCATGGGTTTTGTG  996

seq1  CATCTGATGTAGCTATTTAAGATGTCTCTCAAGACGAATACTGAAATGGT  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGATGTAGCTATTTAAGATGTCTCTCAAGACGAATACTGAAATGGT  1046

seq1  ATTTGTTCCTAAGACATGGGAGGCTCTCCGTACCTTGTGGAGGAAACATG  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCCTAAGACATGGGAGGCTCTCCGTACCTTGTGGAGGAAACATG  1096

seq1  CCCATTAGACAGGTCTCATTCAGACATAAACCGCAGTGTGGTGAATTC  1125
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAGACAGGTCTCATTCAGACATAAACCGCAGTGTGGTGAATTC  1144