BAC Information

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BAC

Clone NameB6Ng01-281E13
Chromosome9 (Build37)
Map Location 53,783,912 - 53,923,437
singlet/doubletdoublet
Overlap geneElmod1, Tnfaip8l3
Upstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996
Downstream geneCyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281E13.bB6Ng01-281E13.g
ACCGA080802GA080803
length8181,133
definitionB6Ng01-281E13.b B6Ng01-281E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,922,620 - 53,923,437)(53,783,912 - 53,785,026)
sequence
gaattcaataggacattgggtgctaatatagaaataaaacaaaagtaaga
aagcaaagcttatggccatgagtctgggaactcagagcctttggttacag
tgagaactttagaaaggcagattgctcagagcagaagctgagaacctgta
ccacactgaccctacccttcacacaagggggagaaaaagacaacagattg
tgctgttggcttcccaaagctctccttctgttttctgccaataatccctc
ttcttggtaactctttctgaaacaccacagcatgaagggagaaagtaagt
gtcttgtgcacttattttctgaatggaatcttactatttgatcactatat
ttaatcaaatttatcaagaggaattaaagtatgaattacaggaatgtgga
agatgaactgacttcctgacttctcaacaattatgtgcctgagacaaaat
ccacattgaggaaaggaacacaatttggaaggcaagaagaacacaagcca
actggagctgtggtgtcaataagctttgctctgggggagggctagtgcac
ttgaacacggtcactgtgactcagatgttatattataaaatgctatccta
aaaaagctttaataaattcaaccactcgtaaatgtctacataacacaaat
ttggcaacgatctaaaacccagctaggatttatagccaatggagcaaatt
gctaaagcattgaaaacctgcattccatggttgatacatattttgagatc
tctctctctctctctctctctctctctctctgtgtgtgtgtgtgtatgtg
tgtgtgtgtgtgtgtgcg
gaattcagtcggcgttaatattgcctctgtctgagacattggggcgggtg
tgcctcctattacctagaagactggctgctcagctcccccaacagcgccc
cccacccccaacagccctccacccctaccgtctccagccattccttaaga
ccctctactcagggtccactgccggcattttctcctttcctctctctctc
ccaacctttcctgtctccctatgtggtcccttgcccattgcagttctcct
ttggctgcgtggctactgaccaatcccagcactcgttgcttctgccctaa
agcttccctgtcttcatcgacttgccgaggaagcacttttgaccttttag
tcttcctccactcgacagtgttctctgatttaaactttccagagacacgc
caacaaaccagggatcgtgttgtctccagcatacctgtatttgcatgtaa
ctgaacttgtgacttagttttttatgtagattttctttttaaaaatggaa
gtgcccgctcctttgtgctattgtgccaaatcttacaaacctgtcaccca
gagtgctatgttcagcccatcccttcacactgtgttctaggaaacagtta
tttctattacatcctgctggtgtcatttctaaaagatttgaacgctctga
ttccctttagtcccaaaataaggtgtttagggttattcagctcaattaca
atggttaacattcttaataatgtgacccatttagttgattgattagtgaa
gcagttattttggttatattcatgcatttgaattgttccagtccaagtat
tatcaacaacctttgtattaaaagttaggagtctaatgtgtccaaaggca
caggctttagatcttgtaaacacatacacacacacacacacacacacaca
cacacacacacacacacactggtgacaagaaagagccagtatcaaagctg
ccccaccaaaagaaaacatgggaattacttttgcaagcaagaaaatcacc
accctaagataagctagggaacatggaaaatgttcacaaatatttttact
aaaacagaaaaaactgcacctcaatacacacaacatgaacctaagtttta
ttaaggaaataaaaaccaatttaaatagtgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_53922620_53923437
seq2: B6Ng01-281E13.b_45_862 (reverse)

seq1  CACACACACACACACACACACATACACACACACACACAGAGAGAGAGAGA  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACACACACACACACACATACACACACACACACAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGATCTCAAAATATGTATCAACCATGGAATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGATCTCAAAATATGTATCAACCATGGAATGCA  100

seq1  GGTTTTCAATGCTTTAGCAATTTGCTCCATTGGCTATAAATCCTAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCAATGCTTTAGCAATTTGCTCCATTGGCTATAAATCCTAGCTGG  150

seq1  GTTTTAGATCGTTGCCAAATTTGTGTTATGTAGACATTTACGAGTGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGATCGTTGCCAAATTTGTGTTATGTAGACATTTACGAGTGGTTG  200

seq1  AATTTATTAAAGCTTTTTTAGGATAGCATTTTATAATATAACATCTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTAAAGCTTTTTTAGGATAGCATTTTATAATATAACATCTGAGT  250

seq1  CACAGTGACCGTGTTCAAGTGCACTAGCCCTCCCCCAGAGCAAAGCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGACCGTGTTCAAGTGCACTAGCCCTCCCCCAGAGCAAAGCTTAT  300

seq1  TGACACCACAGCTCCAGTTGGCTTGTGTTCTTCTTGCCTTCCAAATTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCACAGCTCCAGTTGGCTTGTGTTCTTCTTGCCTTCCAAATTGTG  350

seq1  TTCCTTTCCTCAATGTGGATTTTGTCTCAGGCACATAATTGTTGAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCCTCAATGTGGATTTTGTCTCAGGCACATAATTGTTGAGAAGT  400

seq1  CAGGAAGTCAGTTCATCTTCCACATTCCTGTAATTCATACTTTAATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCAGTTCATCTTCCACATTCCTGTAATTCATACTTTAATTCCT  450

seq1  CTTGATAAATTTGATTAAATATAGTGATCAAATAGTAAGATTCCATTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAAATTTGATTAAATATAGTGATCAAATAGTAAGATTCCATTCAG  500

seq1  AAAATAAGTGCACAAGACACTTACTTTCTCCCTTCATGCTGTGGTGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGTGCACAAGACACTTACTTTCTCCCTTCATGCTGTGGTGTTTC  550

seq1  AGAAAGAGTTACCAAGAAGAGGGATTATTGGCAGAAAACAGAAGGAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGTTACCAAGAAGAGGGATTATTGGCAGAAAACAGAAGGAGAGC  600

seq1  TTTGGGAAGCCAACAGCACAATCTGTTGTCTTTTTCTCCCCCTTGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAGCCAACAGCACAATCTGTTGTCTTTTTCTCCCCCTTGTGTGA  650

seq1  AGGGTAGGGTCAGTGTGGTACAGGTTCTCAGCTTCTGCTCTGAGCAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGGGTCAGTGTGGTACAGGTTCTCAGCTTCTGCTCTGAGCAATCT  700

seq1  GCCTTTCTAAAGTTCTCACTGTAACCAAAGGCTCTGAGTTCCCAGACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTAAAGTTCTCACTGTAACCAAAGGCTCTGAGTTCCCAGACTCA  750

seq1  TGGCCATAAGCTTTGCTTTCTTACTTTTGTTTTATTTCTATATTAGCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATAAGCTTTGCTTTCTTACTTTTGTTTTATTTCTATATTAGCACC  800

seq1  CAATGTCCTATTGAATTC  818
      ||||||||||||||||||
seq2  CAATGTCCTATTGAATTC  818

seq1: chr9_53783912_53785026
seq2: B6Ng01-281E13.g_70_1202

seq1  GAATTCAGTCGGCGTTAATATTGCCTCTGTCTGAGACATTGGGGCGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCGGCGTTAATATTGCCTCTGTCTGAGACATTGGGGCGGGTG  50

seq1  TGCCTCCTATTACCTAGAAGACTGGCTGCTCAGCTCCCCCAACAGCGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTATTACCTAGAAGACTGGCTGCTCAGCTCCCCCAACAGCGCCC  100

seq1  CCCACCCCCAACAGCCCTCCACCCCTACCGTCTCCAGCCATTCCTTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCCAACAGCCCTCCACCCCTACCGTCTCCAGCCATTCCTTAAGA  150

seq1  CCCTCTACTCAGGGTCCACTGCCGGCATTTTCTCCTTTCCTCTCTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTACTCAGGGTCCACTGCCGGCATTTTCTCCTTTCCTCTCTCTCTC  200

seq1  CCAACCTTTCCTGTCTCCCTATGTGGTCCCTTGCCCATTGCAGTTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTTTCCTGTCTCCCTATGTGGTCCCTTGCCCATTGCAGTTCTCCT  250

seq1  TTGGCTGCGTGGCTACTGACCAATCCCAGCACTCGTTGCTTCTGCCCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGCGTGGCTACTGACCAATCCCAGCACTCGTTGCTTCTGCCCTAA  300

seq1  AGCTTCCCTGTCTTCATCGACTTGCCGAGGAAGCACTTTTGACCTTTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCCTGTCTTCATCGACTTGCCGAGGAAGCACTTTTGACCTTTTAG  350

seq1  TCTTCCTCCACTCGACAGTGTTCTCTGATTTAAACTTTCCAGAGACACGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCACTCGACAGTGTTCTCTGATTTAAACTTTCCAGAGACACGC  400

seq1  CAACAAACCAGGGATCGTGTTGTCTCCAGCATACCTGTATTTGCATGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACCAGGGATCGTGTTGTCTCCAGCATACCTGTATTTGCATGTAA  450

seq1  CTGAACTTGTGACTTAGTTTTTTATGTAGATTTTCTTTTTAAAAATGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTTGTGACTTAGTTTTTTATGTAGATTTTCTTTTTAAAAATGGAA  500

seq1  GTGCCCGCTCCTTTGTGCTATTGTGCCAAATCTTACAAACCTGTCACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCGCTCCTTTGTGCTATTGTGCCAAATCTTACAAACCTGTCACCCA  550

seq1  GAGTGCTATGTTCAGCCCATCCCTTCACACTGTGTTCTAGGAAACAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTATGTTCAGCCCATCCCTTCACACTGTGTTCTAGGAAACAGTTA  600

seq1  TTTCTATTACATCCTGCTGGTGTCATTTCTAAAAGATTTGAACGCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTACATCCTGCTGGTGTCATTTCTAAAAGATTTGAACGCTCTGA  650

seq1  TTCCCTTTAGTCCCAAAATAAGGTGTTTAGGGTTATTCAGCTCAATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTAGTCCCAAAATAAGGTGTTTAGGGTTATTCAGCTCAATTACA  700

seq1  ATGGTTAACATTCTTAATAATGTGACCCATTTAGTTGATTGATTAGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAACATTCTTAATAATGTGACCCATTTAGTTGATTGATTAGTGAA  750

seq1  GCAGTTA-TTTGGTTATATTCATGCATTTGAATTGTTCCAGTCCAAGTAT  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATTTTGGTTATATTCATGCATTTGAATTGTTCCAGTCCAAGTAT  800

seq1  TATCAACAACC-TTGTATTAAAAGTTAGGAGTCTAATGTGTCCAAAGGCA  848
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATCAACAACCTTTGTATTAAAAGTTAGGAGTCTAATGTGTCCAAAGGCA  850

seq1  CAGGCTTTAGATCTTGTAAACACATACACACACACACACACACACACACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTTAGATCTTGTAAACACATACACACACACACACACACACACACA  900

seq1  CACACACACACACACACACTGGTGACAAGAAAGAGCCAGTATCAAAGCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACTGGTGACAAGAAAGAGCCAGTATCAAAGCTG  950

seq1  CCCCACCAAAAGAAACAATGG--AATACTTTTGCAGGCAAGAAAATCA-C  995
      |||||||||||||||  ||||  | |||||||||| |||||||||||| |
seq2  CCCCACCAAAAGAAAACATGGGAATTACTTTTGCAAGCAAGAAAATCACC  1000

seq1  ACCCTAGGAT-AGCTA-GGAACATGG-AAATGTTCACA---ATATTTACT  1039
      |||||| ||| ||||| ||||||||| |||||||||||   || ||||||
seq2  ACCCTAAGATAAGCTAGGGAACATGGAAAATGTTCACAAATATTTTTACT  1050

seq1  -AAACAG-AAAAACTGCACTCAAATACACACA--ATG-ACCTAAGTTTTA  1084
       |||||| |||||||||||   ||||||||||  ||| ||||||||||||
seq2  AAAACAGAAAAAACTGCACCTCAATACACACAACATGAACCTAAGTTTTA  1100

seq1  TTTAAGAAATAAAA--CAATTTTAATAGTGATT  1115
      || | |||||||||  |||||| ||||||||||
seq2  TTAAGGAAATAAAAACCAATTTAAATAGTGATT  1133