BAC Information

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BAC

Clone NameB6Ng01-281H16
Chromosome9 (Build37)
Map Location 91,088,002 - 91,197,033
singlet/doubletdoublet
Overlap geneLOC621576
Upstream geneAdamts7, Tbc1d2b, LOC100039777, LOC100039925, EG434428
Downstream geneZic1, Zic4, LOC331000, Plscr1, Plscr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281H16.bB6Ng01-281H16.g
ACCGA080946GA080947
length1,1421,081
definitionB6Ng01-281H16.b B6Ng01-281H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,088,002 - 91,089,155)(91,195,949 - 91,197,033)
sequence
gaattccatgttttctataaagattgcataggttggaagctcttgagaat
acaacagttgttagatcctgagcccaactacagggtaacccaacaattct
tctatttgctcttctctacttatctttaaatttcctatttttttcctgtt
ttggggagagaatgtccagctccttttgtttggtttaacgtagaagctaa
tgctcccataaggtaacattgctctcgctccttttgtgaagcttaaaata
aatattttggttaatgttttgctcaggtaattatgaaatctaatttttaa
aaggcaagacaagcggtgtgcaaatacagctaccagaagcactcccttgt
gaaacatgaccttagttgcctctggttgccctgtgtgctgttttgaatga
gttacttacaaattagcttatttcattcacacctcctcactactaacgtg
acaggcaatttttaaagacaagaaatgtgtgactccattttcaacttttt
aaagtatttcacaattgaaggcatcactctccttatttctgcagttgttt
tgactacatttttcttcacagccctatggacttgtcccttgcctacaact
ttcatgactagcactgagggccaaattgctacttgtaatgtcccaaagac
agaatgacatcatttcatccatctcacaggccagtcacactgacatcaca
cagagacaggctgctcttcactttgggaaagccctcatgctctgggctct
ctaggctttggatgtgcacctgcaaaaccttcttcctcagcttctttctt
tattctatctccttcaagctgaaatcatcagaagagagcactagattcgg
ataatcctgggatttttcttttatataataccaaggatttttaaatattt
caaaagtcagtgattgtttacactccacctttgtcctgtgacctatgctc
actctgcttttgacttttatctgacctatgtcatcagccttagatcctgg
cagagttttgcacaagctgttatcagtctcattttctatacctgacagaa
atagtaaactgtcagcttctcttcctgtgcaaaaacatcatctggaaaac
actggagaagtcaagtttacaaggaagctcctacatgtctgc

gaattcctcagggtacatcacaaattagggacagaattagaatcgaagtt
cacaagcacgaggttccagtttgttgcttagtcaccgaagctttctttta
ctcagccttcagtcatggtcttcattctgtaggccacactggcctacaga
aaggacacagattgacagatagacaggtttccttatgaaggttggtgcat
atattgtgaaagggttatgaacacagtgaaaattcaagtgatgtttctaa
atgcagcatttgttgacacttctggatttcagtcaatattttattcatta
cttaagtgtttgaaaaagaatgacattataataaaaaataattttttaaa
aattcaatttttgccactttttcctttgatgacatatatacttattaaaa
agttcagtatattctaattttaccattttaaaatgctgccttgagatttc
aagaaagtaattatagaagagtgtgtcatgaaatagtaattactgcaaaa
agaatttaatggatagacttgtaagtactaaatactaccttaaaattgaa
cacataaaatatgatacaaattagtagattgcttcatacatatataaggt
taatacatatttatttataaatatgaataaatgtatgtaaatatattagt
ttatgtaacatatatcctatgtgtattctacatgtaaagagatgatgaga
gagaatgaaaaatgttctctttatatgcatgcacatttataaatggctca
attggattgaaggaaactagagaaaatacgaaagtttttactggagtttc
tttagctaataatattctgtaattatcagctaccatttgttttgtacttt
attttatacacagtacttaaagttacaaaatttcttcatatagtacccag
gaatgatatctatacacatcttcattttttagaagagaaaatgaaataaa
tgacatggacatttaaaggatttaagtgaattctcaaaatcacacacatt
gtaatattgaacttgaaccaaattctatttaattctaaagctctatcatg
catcatatctttggataaaagaaaaagtaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91088002_91089155
seq2: B6Ng01-281H16.b_42_1183

seq1  GAATTCCATGTTTTCTATAAAGATTGCATAGGTTGGAAGCTCTTGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTTTTCTATAAAGATTGCATAGGTTGGAAGCTCTTGAGAAT  50

seq1  ACAACAGTTGTTAGATCCTGAGCCCAACTACAGGGTAACCCAACAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTTGTTAGATCCTGAGCCCAACTACAGGGTAACCCAACAATTCT  100

seq1  TCTATTTGCTCTTCTCTACTTATCTTTAAATTTCCTATTTTTTTCCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGCTCTTCTCTACTTATCTTTAAATTTCCTATTTTTTTCCTGTT  150

seq1  TTGGGGAGAGAATGTCCAGCTCCTTTTGTTTGGTTTAACGTAGAAGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAGAGAATGTCCAGCTCCTTTTGTTTGGTTTAACGTAGAAGCTAA  200

seq1  TGCTCCCATAAGGTAACATTGCTCTCGCTCCTTTTGTGAAGCTTAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCATAAGGTAACATTGCTCTCGCTCCTTTTGTGAAGCTTAAAATA  250

seq1  AATATTTTGGTTAATGTTTTGCTCAGGTAATTATGAAATCTAATTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTGGTTAATGTTTTGCTCAGGTAATTATGAAATCTAATTTTTAA  300

seq1  AAGGCAAGACAAGCGGTGTGCAAATACAGCTACCAGAAGCACTCCCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGACAAGCGGTGTGCAAATACAGCTACCAGAAGCACTCCCTTGT  350

seq1  GAAACATGACCTTAGTTGCCTCTGGTTGCCCTGTGTGCTGTTTTGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGACCTTAGTTGCCTCTGGTTGCCCTGTGTGCTGTTTTGAATGA  400

seq1  GTTACTTACAAATTAGCTTATTTCATTCACACCTCCTCACTACTAACGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTACAAATTAGCTTATTTCATTCACACCTCCTCACTACTAACGTG  450

seq1  ACAGGCAATTTTTAAAGACAAGAAATGTGTGACTCCATTTTCAACTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAATTTTTAAAGACAAGAAATGTGTGACTCCATTTTCAACTTTTT  500

seq1  AAAGTATTTCACAATTGAAGGCATCACTCTCCTTATTTCTGCAGTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTTCACAATTGAAGGCATCACTCTCCTTATTTCTGCAGTTGTTT  550

seq1  TGACTACATTTTTCTTCACAGCCCTATGGACTTGTCCCTTGCCTACAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACATTTTTCTTCACAGCCCTATGGACTTGTCCCTTGCCTACAACT  600

seq1  TTCATGACTAGCACTGAGGGCCAAATTGCTACTTGTAATGTCCCAAAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACTAGCACTGAGGGCCAAATTGCTACTTGTAATGTCCCAAAGAC  650

seq1  AGAATGACATCATTTCATCCATCTCACAGGCCAGTCACACTGACATCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACATCATTTCATCCATCTCACAGGCCAGTCACACTGACATCACA  700

seq1  CAGAGACAGGCTGCTCTTCACTTTGGGAAAGCCCTCATGCTCTGGGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGGCTGCTCTTCACTTTGGGAAAGCCCTCATGCTCTGGGCTCT  750

seq1  CTAGGCTTTGGATGTGCACCTGCAAAACCTTCTTCCTCAGCTTCTTTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTTGGATGTGCACCTGCAAAACCTTCTTCCTCAGCTTCTTTCTT  800

seq1  TATTCTATCTCCTTCAAGCTGAAATCATCAGAAGAGAGCACTAGATTCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATCTCCTTCAAGCTGAAATCATCAGAAGAGAGCACTAGATTCGG  850

seq1  ATAATCCTGGGATTTTTCTTTTATATAATACCAAGGATTTTTAAATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTGGGATTTTTCTTTTATATAATACCAAGGATTTTTAAATATTT  900

seq1  CAAAAGTCAGTGATTGTTTACACTCCACCTTTGTCCTGTGACCTATGCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCAGTGATTGTTTACACTCCACCTTTGTCCTGTGACCTATGCTC  950

seq1  ACTCTGCTTTTGACTTTTATCTGACCTATGTCATCAGCCTTAGATCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCTTTTGACTTTTATCTGACCTATGTCATCAGCCTTAGATCCTGG  1000

seq1  CAAGAGTTTTGCACAAGCTGTTATCAGTCTTCATTTTCTTATACCTGACA  1050
      | ||||||||||||||||||||||||||| |||||||| |||||||||||
seq2  C-AGAGTTTTGCACAAGCTGTTATCAGTC-TCATTTTC-TATACCTGACA  1047

seq1  GAAATAGTAAAACTGTCAGCTTCTCTTCCTGGTTTCCAAAAACATTCCTT  1100
      |||||||| ||||||||||||||||||||||   | |||||||||  | |
seq2  GAAATAGT-AAACTGTCAGCTTCTCTTCCTG---TGCAAAAACAT--CAT  1091

seq1  CTGGAAAACACTGAGAAAATCAAATTTTACAAAGGAAAACTCCTACATGT  1150
      ||||||||||||| || ||   || |||||||  | || |||||||||||
seq2  CTGGAAAACACTG-GAGAAGTCAAGTTTACAA--GGAAGCTCCTACATGT  1138

seq1  CTGC  1154
      ||||
seq2  CTGC  1142


seq1: chr9_91195949_91197033
seq2: B6Ng01-281H16.g_64_1144 (reverse)

seq1  ATTACTTTTTTCTTTTAT-CAAAGATATTGATGCATGATAGAAGGCTTTA  49
      ||||| |||||||||||| |||||||| ||||||||||||||  ||||||
seq2  ATTAC-TTTTTCTTTTATCCAAAGATA-TGATGCATGATAGA--GCTTTA  46

seq1  GAATTAAATAGAATTTGGTTCAAGTTCAATATTAACAATGTGTGTGATTT  99
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAATTAAATAGAATTTGGTTCAAGTTCAATATT-ACAATGTGTGTGATTT  95

seq1  TGAGGAATTCACTTAAATCCTTTAAATGTCCATGTCATTTATTTCATTTT  149
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGA-GAATTCACTTAAATCCTTTAAATGTCCATGTCATTTATTTCATTTT  144

seq1  CTCTTCTAAAAAATGAAGATGTGTATAGATATCATTCCTGGGTACTATAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTAAAAAATGAAGATGTGTATAGATATCATTCCTGGGTACTATAT  194

seq1  GAAGAAATTTTGTAACTTTAAGTACTGTGTATAAAAT-AAGTACAAAACA  248
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAGAAATTTTGTAACTTTAAGTACTGTGTATAAAATAAAGTACAAAACA  244

seq1  AATGGTAGCTGATAATTACAGAATATTATTAGCTAAAGAAACTCCAGTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGCTGATAATTACAGAATATTATTAGCTAAAGAAACTCCAGTAA  294

seq1  AAACTTTCGTATTTTCTCTAGTTTCCTTCAATCCAATTGAGCCATTTATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTCGTATTTTCTCTAGTTTCCTTCAATCCAATTGAGCCATTTATA  344

seq1  AATGTGCATGCATATAAAGAGAACATTTTTCATTCTCTCTCATCATCTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCATGCATATAAAGAGAACATTTTTCATTCTCTCTCATCATCTCT  394

seq1  TTACATGTAGAATACACATAGGATATATGTTACATAAACTAATATATTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGTAGAATACACATAGGATATATGTTACATAAACTAATATATTTA  444

seq1  CATACATTTATTCATATTTATAAATAAATATGTATTAACCTTATATATGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATTTATTCATATTTATAAATAAATATGTATTAACCTTATATATGT  494

seq1  ATGAAGCAATCTACTAATTTGTATCATATTTTATGTGTTCAATTTTAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCAATCTACTAATTTGTATCATATTTTATGTGTTCAATTTTAAGG  544

seq1  TAGTATTTAGTACTTACAAGTCTATCCATTAAATTCTTTTTGCAGTAATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTAGTACTTACAAGTCTATCCATTAAATTCTTTTTGCAGTAATT  594

seq1  ACTATTTCATGACACACTCTTCTATAATTACTTTCTTGAAATCTCAAGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTCATGACACACTCTTCTATAATTACTTTCTTGAAATCTCAAGGC  644

seq1  AGCATTTTAAAATGGTAAAATTAGAATATACTGAACTTTTTAATAAGTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTAAAATGGTAAAATTAGAATATACTGAACTTTTTAATAAGTAT  694

seq1  ATATGTCATCAAAGGAAAAAGTGGCAAAAATTGAATTTTTAAAAAATTAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCATCAAAGGAAAAAGTGGCAAAAATTGAATTTTTAAAAAATTAT  744

seq1  TTTTTATTATAATGTCATTCTTTTTCAAACACTTAAGTAATGAATAAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTATAATGTCATTCTTTTTCAAACACTTAAGTAATGAATAAAAT  794

seq1  ATTGACTGAAATCCAGAAGTGTCAACAAATGCTGCATTTAGAAACATCAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTGAAATCCAGAAGTGTCAACAAATGCTGCATTTAGAAACATCAC  844

seq1  TTGAATTTTCACTGTGTTCATAACCCTTTCACAATATATGCACCAACCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTTCACTGTGTTCATAACCCTTTCACAATATATGCACCAACCTT  894

seq1  CATAAGGAAACCTGTCTATCTGTCAATCTGTGTCCTTTCTGTAGGCCAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAAACCTGTCTATCTGTCAATCTGTGTCCTTTCTGTAGGCCAGT  944

seq1  GTGGCCTACAGAATGAAGACCATGACTGAAGGCTGAGTAAAAGAAAGCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTACAGAATGAAGACCATGACTGAAGGCTGAGTAAAAGAAAGCTT  994

seq1  CGGTGACTAAGCAACAAACTGGAACCTCGTGCTTGTGAACTTCGATTCTA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGACTAAGCAACAAACTGGAACCTCGTGCTTGTGAACTTCGATTCTA  1044

seq1  ATTCTGTCCCTAATTTGTGATGTACCCTGAGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCCCTAATTTGTGATGTACCCTGAGGAATTC  1081


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