BAC Information

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BAC

Clone NameB6Ng01-282K11
Chromosome9 (Build37)
Map Location 28,149,046 - 28,275,283
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneSpata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282K11.bB6Ng01-282K11.g
ACCGA081814GA081815
length1,1611,112
definitionB6Ng01-282K11.b B6Ng01-282K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,274,118 - 28,275,283)(28,149,046 - 28,150,152)
sequence
gaattctgaaagcaggagtgggacagatgactcagtgggtaaaagcactg
actgctctttccaaggacctgggattaagtcttagtacatacatggtggc
tcacagtcatctaaaactccagttccagaggatccaatgtcctcttctta
tgtctgcaggcatcaagcatgaacaaggtacacagacatatgtgcggcca
aaacactcacagataaaatcagttgaaaattttttgaaaaaaatcacaaa
tattttatattttttgattgacagagtagagacaatgaacatatacagga
tacctaccaggaaatacaaactctgccagctatgctactaaacagtggaa
gactcaggaaacagccttataccttgtgtcttagggtttgcattgctgta
aagaaacaccatgaccaaggcaaccattataaaggacatttcattgggac
tggctcacgggctcagaggtttaggacattattattaaggcagaaagcat
ggcagtgtccaggcaggaatggcactagaagagctgagagctctacatct
tgttctgaaggcaaataggtgaagactccaggcagctaggatgagggtct
caaagcccatacccacagtaacacacttcttctgacaaggccacacctat
accaacaagaccacacctaatagtgccactcactccctgagccaagcata
tgcaaaccaccacacgtacacaatcctctatccctatattgtcttgtgac
tatgaagctcatctccaggctaggtcttgcctaggcaagaaagagcctag
tgatttccttcatagtcaaaagcccacttatggattctgagggacatttt
gaaagttgagccaaatctattttcatgaaaattccatttataatactctg
caattcttgctcacgttctttcatcagggtttcaaaataagtcaaccatg
ctagtgaatttttgatgacatttcggaagatgagtctagaaccaagttaa
tgataggctttcctccatgaaacctttcaagtttctttcaagtaccagat
ctctgcaggtgtcttacagaatacattccccagtgcttttggctcttcat
acattcttccaaagggagacagtagaatgatgcatactcctctactactt
agggagaaaat

gaattctcatttctaggtggtcaatgtgaaatcgtgcagatcatagctct
gttatatgacaaatagaaaaaccaaaaggtctcctcttcctcctgaggtt
gttgagagaaacactttgacaatcataggagagagcaatagaaatgtaag
ctgtattactgctgtggttgttagtacacacagtcatttccttgcttcaa
tgccaagtcacactaacagcagtattgggagtatagatggcggagatgaa
gactttaagaacatttctttgcagagttcaactggaggtaagtacagatg
ctctctgagtcatgcacatttattttatggacagccaatatataagaagt
gggggcatcatcactagccatctactctagcaagcagtgctgggaattct
gtttctttgactatatttttgtgaccattctgactccttactactaccca
ttgctcttaagtttagatagctcacatggggactcatctgccctcggttt
tcctttgtgccagctttataatctctctcaagtgtgtcatgtcctttcaa
cttccaggagtcacctaaccttgatcatgtgggtccctaaattctttcac
actacagattcttctgtctcttgtttcttgtgctgattttggcagcccaa
gaataactttaaattgtcataaaataattgctttagttggagacttaaat
taatgacagaattgaagaatttatttttaagtaagtcatatgaagatcaa
acatatcatgaaagatttaagagaattccaggcacatgaaactggagtat
tataaataatggcctctagcccatgaagataagtaggttggttttctcag
tatcttttttttttcatttttttaaatgtccttttttttattgggtattt
attttcatttacattttcaacgctatcccaaaagtctcccacccactccc
ccatccacccactccacttcctgaccctggcaattcccctgtactgaagg
cataataaagttgcactacaatggcctcacctttccactgatggccaact
aggcattcttctgaattcataatgcagctagagaaacgaagcttcggggg
agagtaggtact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28274118_28275283
seq2: B6Ng01-282K11.b_45_1205 (reverse)

seq1  ATTTTCTCCCTAGGTAGTAAGGAGGGAGTATGCAATCCATTCTACTGTCT  50
      |||||||||||| ||||||  || ||||||||||   |||||||||||||
seq2  ATTTTCTCCCTAAGTAGTA--GA-GGAGTATGCA--TCATTCTACTGTCT  45

seq1  CC--TTTGAAGGATGTATTGAAGAGCAAAAAGCACTGGGG-ATGTA-TCT  96
      ||  || |||| ||||| |||||||| ||||||||||||| ||||| |||
seq2  CCCTTTGGAAGAATGTA-TGAAGAGCCAAAAGCACTGGGGAATGTATTCT  94

seq1  GTAAGGACACCTGCAGAGAATCTTGTACTTTGAAAGAAACTTGAAAGGTT  146
      |||| ||||||||||||| |||| |||| ||||||||||||||||||| |
seq2  GTAA-GACACCTGCAGAG-ATCTGGTAC-TTGAAAGAAACTTGAAAGG-T  140

seq1  TTCATGGAGGAAAGCCTATCATTAACTTGGTTCTAGACTCATCTTCCGAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGAGGAAAGCCTATCATTAACTTGGTTCTAGACTCATCTTCCGAA  190

seq1  ATGTCATC-AAAATTCACTAGCATGGTTGACTTATTTTGAAACCCTGATG  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCAAAAATTCACTAGCATGGTTGACTTATTTTGAAACCCTGATG  240

seq1  AAAGAACGTGAGCAAGAATTGCAGAGTATTATAAATGGAATTTTCATGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACGTGAGCAAGAATTGCAGAGTATTATAAATGGAATTTTCATGAA  290

seq1  AATAGATTTGGCTCAACTTTCAAAATGTCCCTCAGAATCCATAAGTGGGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTTGGCTCAACTTTCAAAATGTCCCTCAGAATCCATAAGTGGGC  340

seq1  TTTTGACTATGAAGGAAATCACTAGGCTCTTTCTTGCCTAGGCAAGACCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTATGAAGGAAATCACTAGGCTCTTTCTTGCCTAGGCAAGACCT  390

seq1  AGCCTGGAGATGAGCTTCATAGTCACAAGACAATATAGGGATAGAGGATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGAGATGAGCTTCATAGTCACAAGACAATATAGGGATAGAGGATT  440

seq1  GTGTACGTGTGGTGGTTTGCATATGCTTGGCTCAGGGAGTGAGTGGCACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACGTGTGGTGGTTTGCATATGCTTGGCTCAGGGAGTGAGTGGCACT  490

seq1  ATTAGGTGTGGTCTTGTTGGTATAGGTGTGGCCTTGTCAGAAGAAGTGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTGTGGTCTTGTTGGTATAGGTGTGGCCTTGTCAGAAGAAGTGTG  540

seq1  TTACTGTGGGTATGGGCTTTGAGACCCTCATCCTAGCTGCCTGGAGTCTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTGGGTATGGGCTTTGAGACCCTCATCCTAGCTGCCTGGAGTCTT  590

seq1  CACCTATTTGCCTTCAGAACAAGATGTAGAGCTCTCAGCTCTTCTAGTGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTATTTGCCTTCAGAACAAGATGTAGAGCTCTCAGCTCTTCTAGTGC  640

seq1  CATTCCTGCCTGGACACTGCCATGCTTTCTGCCTTAATAATAATGTCCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGCCTGGACACTGCCATGCTTTCTGCCTTAATAATAATGTCCTA  690

seq1  AACCTCTGAGCCCGTGAGCCAGTCCCAATGAAATGTCCTTTATAATGGTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGAGCCCGTGAGCCAGTCCCAATGAAATGTCCTTTATAATGGTT  740

seq1  GCCTTGGTCATGGTGTTTCTTTACAGCAATGCAAACCCTAAGACACAAGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCATGGTGTTTCTTTACAGCAATGCAAACCCTAAGACACAAGG  790

seq1  TATAAGGCTGTTTCCTGAGTCTTCCACTGTTTAGTAGCATAGCTGGCAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGCTGTTTCCTGAGTCTTCCACTGTTTAGTAGCATAGCTGGCAGA  840

seq1  GTTTGTATTTCCTGGTAGGTATCCTGTATATGTTCATTGTCTCTACTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATTTCCTGGTAGGTATCCTGTATATGTTCATTGTCTCTACTCTG  890

seq1  TCAATCAAAAAATATAAAATATTTGTGATTTTTTTCAAAAAATTTTCAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAAAAAATATAAAATATTTGTGATTTTTTTCAAAAAATTTTCAAC  940

seq1  TGATTTTATCTGTGAGTGTTTTGGCCGCACATATGTCTGTGTACCTTGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATCTGTGAGTGTTTTGGCCGCACATATGTCTGTGTACCTTGTT  990

seq1  CATGCTTGATGCCTGCAGACATAAGAAGAGGACATTGGATCCTCTGGAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGATGCCTGCAGACATAAGAAGAGGACATTGGATCCTCTGGAAC  1040

seq1  TGGAGTTTTAGATGACTGTGAGCCACCATGTATGTACTAAGACTTAATCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTTAGATGACTGTGAGCCACCATGTATGTACTAAGACTTAATCC  1090

seq1  CAGGTCCTTGGAAAGAGCAGTCAGTGCTTTTACCCACTGAGTCATCTGTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTTGGAAAGAGCAGTCAGTGCTTTTACCCACTGAGTCATCTGTC  1140

seq1  CCACTCCTGCTTTCAGAATTC  1166
      |||||||||||||||||||||
seq2  CCACTCCTGCTTTCAGAATTC  1161


seq1: chr9_28149046_28150152
seq2: B6Ng01-282K11.g_67_1178

seq1  GAATTCTCATTTCTAGGTGGTCAATGTGAAATCGTGCAGATCATAGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTCTAGGTGGTCAATGTGAAATCGTGCAGATCATAGCTCT  50

seq1  GTTATATGACAAATAGAAAAACCAAAAGGTCTCCTCTTCCTCCTGAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATGACAAATAGAAAAACCAAAAGGTCTCCTCTTCCTCCTGAGGTT  100

seq1  GTTGAGAGAAACACTTTGACAATCATAGGAGAGAGCAATAGAAATGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAGAAACACTTTGACAATCATAGGAGAGAGCAATAGAAATGTAAG  150

seq1  CTGTATTACTGCTGTGGTTGTTAGTACACACAGTCATTTCCTTGCTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTACTGCTGTGGTTGTTAGTACACACAGTCATTTCCTTGCTTCAA  200

seq1  TGCCAAGTCACACTAACAGCAGTATTGGGAGTATAGATGGCGGAGATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGTCACACTAACAGCAGTATTGGGAGTATAGATGGCGGAGATGAA  250

seq1  GACTTTAAGAACATTTCTTTGCAGAGTTCAACTGGAGGTAAGTACAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAAGAACATTTCTTTGCAGAGTTCAACTGGAGGTAAGTACAGATG  300

seq1  CTCTCTGAGTCATGCACATTTATTTTATGGACAGCCAATATATAAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAGTCATGCACATTTATTTTATGGACAGCCAATATATAAGAAGT  350

seq1  GGGGGCATCATCACTAGCCATCTACTCTAGCAAGCAGTGCTGGGAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCATCATCACTAGCCATCTACTCTAGCAAGCAGTGCTGGGAATTCT  400

seq1  GTTTCTTTGACTATATTTTTGTGACCATTCTGACTCCTTACTACTACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGACTATATTTTTGTGACCATTCTGACTCCTTACTACTACCCA  450

seq1  TTGCTCTTAAGTTTAGATAGCTCACATGGGGACTCATCTGCCCTCGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTAAGTTTAGATAGCTCACATGGGGACTCATCTGCCCTCGGTTT  500

seq1  TCCTTTGTGCCAGCTTTATAATCTCTCTCAAGTGTGTCATGTCCTTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGCCAGCTTTATAATCTCTCTCAAGTGTGTCATGTCCTTTCAA  550

seq1  CTTCCAGGAGTCACCTAACCTTGATCATGTGGGTCCCTAAATTCTTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAGTCACCTAACCTTGATCATGTGGGTCCCTAAATTCTTTCAC  600

seq1  ACTACAGATTCTTCTGTCTCTTGTTTCTTGTGCTGATTTTGGCAGCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGATTCTTCTGTCTCTTGTTTCTTGTGCTGATTTTGGCAGCCCAA  650

seq1  GAATAACTTTAAATTGTCATAAAATAATTGCTTTAGTTGGAGACTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTTTAAATTGTCATAAAATAATTGCTTTAGTTGGAGACTTAAAT  700

seq1  TAATGACAGAATTGAAGAATTTATTTTTAAGTAAGTCATATGAAGATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGACAGAATTGAAGAATTTATTTTTAAGTAAGTCATATGAAGATCAA  750

seq1  ACATATCATGAAAGATTTAAGAGAATTCCAGGCACATGAAACTGGAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCATGAAAGATTTAAGAGAATTCCAGGCACATGAAACTGGAGTAT  800

seq1  TATAAATAATGGCCTCTAGCCCATGAAGATAAGTAGGTTGGTTTTCTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAATGGCCTCTAGCCCATGAAGATAAGTAGGTTGGTTTTCTCAG  850

seq1  TATCTTTTTTTTTTCATTTTTTT-AATGTTCTTTTTTTTATTGGGTATTT  899
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  TATCTTTTTTTTTTCATTTTTTTAAATGTCCTTTTTTTTATTGGGTATTT  900

seq1  A-TTTCATTTACATTTCCAACGCTATCCCAAAAGTCTCCCACCCACTCCC  948
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTACATTTTCAACGCTATCCCAAAAGTCTCCCACCCACTCCC  950

seq1  CCATCCACCCACTCCCACTTCCTGACCCTGGC-ATTCCCCTGTACTG-AG  996
      ||||||||||||| |||||||||||||||||| |||||||||||||| ||
seq2  CCATCCACCCACT-CCACTTCCTGACCCTGGCAATTCCCCTGTACTGAAG  999

seq1  GCAT-ATAAAGTTTGCACTACCAATGGGCCTCA-CTTTCCACTGATGGCC  1044
      |||| |||||| |||||||| |||| ||||||| ||||||||||||||||
seq2  GCATAATAAAG-TTGCACTA-CAAT-GGCCTCACCTTTCCACTGATGGCC  1046

seq1  AACTAGGCCATCTTCTG-ATTCAT-ATGCAGCTAGAGACACG-AGCTCCG  1091
      ||||||||  ||||||| |||||| ||||||||||||| ||| |||| ||
seq2  AACTAGGCATTCTTCTGAATTCATAATGCAGCTAGAGAAACGAAGCTTCG  1096

seq1  GGGGAGGGGAGGTACT  1107
      |||||| | |||||||
seq2  GGGGAGAGTAGGTACT  1112


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