BAC Information

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BAC

Clone NameB6Ng01-282L17
Chromosome9 (Build37)
Map Location 9,358,552 - 9,359,666
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpc6, Pgr, 9030420J04Rik
Downstream geneCntn5, LOC665154, LOC100039970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282L17.bB6Ng01-282L17.g
ACCGA081874GA081875
length1,1391,117
definitionB6Ng01-282L17.b B6Ng01-282L17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtctagctctgtaccccatttttaaaatagggttatttgat
tttctggagtccagcttcttaagttctttgtatatataggaaattagtcc
cctatcagatttaggattggtgaagatcctttcccaatctgttggtggcc
tttttgtcttattgacagtgccttttgccttacaacagctttgcaatttt
atgaggtcccatttgtcgactctcgatcttacagcacaagccattgctgt
tctgttcaggaatttttcccctgtgcccatatcttccaggcttttcccca
ttttgtcctctataagtttcagtgtctctggttttatgtggaggtctttg
atccacttagacttgagctttgtacaaggacataagaatggatcaattcg
cattcttctacatgacaactgccaattgaggcagcaccatttgttgaaaa
tgctgtcttttttcaactggatggctttagcacctttgtcaaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctgttccattg
atctacctgtctgtcactgtaacagtaccatgcagtttttatcacaattg
ctctgtagtacagcttgaggtcaggcatggtgattccccagaggtgcttt
tattgttgagaatagttttagctatcataagttttttttttttggttttt
tttttttttttttttttttttggtatctaaagaaaaatttgcaaattgcc
ccttttctaactcggtgaagaattgagttgggaattttgatggggattac
attgaatttgtaaggttgctttccgggaagatagcctttgactatatttt
tttccaatttttttattaagtgtttagttcatttatatttaaaattctaa
aatgaaagtgcactataccctcccccaccctggatccttacccaccactc
cactcttgggcctggtgttccctgtactggggcatataagtttgcagaca
gggctcttccatgatgccactagccatctctgctactatgcagctaagaa
catgagactggggtatcgtaggttcatgtagtcactaggtgcgaccatag
cctagattatccagtccaatgggatcatggttcacatca

gaattctcagctcctcttgcaccatgtctgcttaaatgttaccatgttat
tgcctttataatagatgacagactgagcctctgaacctgtaagccagccc
caattaaatgtctttataagacttataagactctgtgtagcccctggaac
tgcccttgaacttcattagtagaccagctggccttgaactcagagatgca
cttgcttctgcctactgagtgtaggaagcactcttaaccacgagtcacct
tttctgctcagtctgttccatgttatttgtgtcaataatcaatatgacag
cactttcattgcataatactaataccataacagcaatccactgtattgag
gtacagttttactactttaaaatccttaaatacaaactatacttaaaaca
ctgaatattaaaagtaaatgtgacctgtaaaataatatttactaaactta
tccccatataactttaaccaaaggaaactcaaactatgatatttatttaa
taggttctatgaaattattgggggattaccataatccaaatttcttattg
ctagtctagctactggctcaactgtgctccccaaatacttgctgtttgaa
attctctgagttatttctgtcccgcagtctggtgttctgggagggcatat
cattgtggcatatgctattggtccatcaggactcatggggacctactgat
ctccagtcttctccgtgctcctcctccctctccccccccaactccttctc
ctcctcctcctcatagtgtctatttgagaccccctagttctgcaactcaa
actctacatgtctctattccaccatgtaattggctgttgccagttttatt
taaccagtagtttaaatttgcagagtaaggtttacagagtatcacttgtt
ggggagcatcttggggggtgcagagctgggggcagggcccgggaccagat
ccttgggagccagtatttagcatataaatacaagcagcaccagacttgat
gttcagaggaaaacaaaaacagctaggtagagaaatcactttcttcctac
atgcacaaacatcctgattaccacattagaccagaaagtcccttcaagaa
tcagaatactatgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9358552_9359666
seq2: B6Ng01-282L17.g_67_1183

seq1  GAATTCTCAGCTCCTCTTGCACCATGTCTGCTTAAATGTTACCATGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTCTTGCACCATGTCTGCTTAAATGTTACCATGTTAT  50

seq1  TGCCTTTATAATAGATGACAGACTGAGCCTCTGAACCTGTAAGCCAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTATAATAGATGACAGACTGAGCCTCTGAACCTGTAAGCCAGCCC  100

seq1  CAATTAAATGTCTTTATAAGACTTATAAGACTCTGTGTAGCCCCTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATGTCTTTATAAGACTTATAAGACTCTGTGTAGCCCCTGGAAC  150

seq1  TGCCCTTGAACTTCATTAGTAGACCAGCTGGCCTTGAACTCAGAGATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGAACTTCATTAGTAGACCAGCTGGCCTTGAACTCAGAGATGCA  200

seq1  CTTGCTTCTGCCTACTGAGTGTAGGAAGCACTCTTAACCACGAGTCACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTCTGCCTACTGAGTGTAGGAAGCACTCTTAACCACGAGTCACCT  250

seq1  TTTCTGCTCAGTCTGTTCCATGTTATTTGTGTCAATAATCAATATGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTCAGTCTGTTCCATGTTATTTGTGTCAATAATCAATATGACAG  300

seq1  CACTTTCATTGCATAATACTAATACCATAACAGCAATCCACTGTATTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCATTGCATAATACTAATACCATAACAGCAATCCACTGTATTGAG  350

seq1  GTACAGTTTTACTACTTTAAAATCCTTAAATACAAACTATACTTAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTTTTACTACTTTAAAATCCTTAAATACAAACTATACTTAAAACA  400

seq1  CTGAATATTAAAAGTAAATGTGACCTGTAAAATAATATTTACTAAACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATTAAAAGTAAATGTGACCTGTAAAATAATATTTACTAAACTTA  450

seq1  TCCCCATATAACTTTAACCAAAGGAAACTCAAACTATGATATTTATTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATATAACTTTAACCAAAGGAAACTCAAACTATGATATTTATTTAA  500

seq1  TAGGTTCTATGAAATTATTGGGGGATTACCATAATCCAAATTTCTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTATGAAATTATTGGGGGATTACCATAATCCAAATTTCTTATTG  550

seq1  CTAGTCTAGCTACTGGCTCAACTGTGCTCCCCAAATACTTGCTGTTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTAGCTACTGGCTCAACTGTGCTCCCCAAATACTTGCTGTTTGAA  600

seq1  ATTCTCTGAGTTATTTCTGTCCCGCAGTCTGGTGTTCTGGGAGGGCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGAGTTATTTCTGTCCCGCAGTCTGGTGTTCTGGGAGGGCATAT  650

seq1  CATTGTGGCATATGCTATTGGTCCATCAGGACTCATGGGGACCTACTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGCATATGCTATTGGTCCATCAGGACTCATGGGGACCTACTGAT  700

seq1  CTCCAGTCTTCTCCGTGCTCCTCCTCCCTCTCCCCCCCCAACTCCTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTCTTCTCCGTGCTCCTCCTCCCTCTCCCCCCCCAACTCCTTCTC  750

seq1  CTCCTCCTCCTCATAGTGTCTATTTGAGACCCCCTAGTTCTGCAACTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCTCCTCATAGTGTCTATTTGAGACCCCCTAGTTCTGCAACTCAA  800

seq1  ACTCTACATGTCTCTATTCCACCATGTAATTGGCTGTTGCCAGTTTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACATGTCTCTATTCCACCATGTAATTGGCTGTTGCCAGTTTTATT  850

seq1  TAACCAGTAGTTTAAATTTGCAGAGTAAGGTTTACAGAGTATCACTTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTAGTTTAAATTTGCAGAGTAAGGTTTACAGAGTATCACTTGTT  900

seq1  -GGGAGCATCTTGGGGGGTGCAGAGCTGGGGGCAGGGCCCGGGACCAGAT  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCATCTTGGGGGGTGCAGAGCTGGGGGCAGGGCCCGGGACCAGAT  950

seq1  -CTTGGGAGCCAGTATTTAGCATATAAATACAAGCAGCACCAGACTTGAA  998
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTTGGGAGCCAGTATTTAGCATATAAATACAAGCAGCACCAGACTTGAT  1000

seq1  TGTCAGA-GAAAAC-AAAACAGCTAGTAAGAGAAATCACTTCCTCCTAAC  1046
        ||||| |||||| |||||||||||  ||||||||||||| || |  ||
seq2  GTTCAGAGGAAAACAAAAACAGCTAGGTAGAGAAATCACTTTCTTCCTAC  1050

seq1  AATGCACAAACAT-CTGATTACACATTTTAGACAAGAAAGTCTCTCAGGG  1095
       |||||||||||| |||||||| ||  |||||| |||||||| ||    |
seq2  -ATGCACAAACATCCTGATTAC-CACATTAGACCAGAAAGTCCCTTCAAG  1098

seq1  AATCAGAATACCTATGTCTG  1115
      |||||||||| |||||||||
seq2  AATCAGAATA-CTATGTCTG  1117


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