BAC Information

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BAC

Clone NameB6Ng01-283B12
Chromosome9 (Build37)
Map Location 76,667,132 - 76,721,745
singlet/doubletdoublet
Overlap genenone
Upstream geneBmp5, EG620071, Hmgcll1, Gfral, Hcrtr2, C530008M07Rik
Downstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283B12.bB6Ng01-283B12.g
ACCGA082140GA082141
length1,157967
definitionB6Ng01-283B12.b B6Ng01-283B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,667,132 - 76,668,300)(76,721,161 - 76,721,745)
sequence
gaattctcaatcccagccatggagaatttggttatccacatgacagtaat
gccactattgcactaggaaatgcatctctccttgcaggttgatattatat
atcatagctacacaacactgttgatgacacttcttttccagcacacttca
tagcacctttctgcccatatgtttgctagcaaacagaaagagaccttcca
gttcaactgcatcttgatttatttatgtccaacaatcatggtatgtgtct
ttatcaatgataaggtcttatcattttgttatggtggcaaccagaagcac
cagcaataattcatgctgttttgtaagactattgagacttcctgtccaaa
aactcatgaggaggtattttacatctggtactggtattcccatttgatca
ctcatgtctaagggttaggatgatccatctgtgaagggttattcaattaa
tactcttttaaaatacttttgaatttctttatatgaacaaaagtgaccat
attccttcttacagccataatattgatcaatcctctccattatctactct
tctcctctcctccttccttgtttaaaactttataccaaattattgcccct
tcctgcatcccctttgtatatattctactatgcaaactttttcaaatgtc
ttgttcattttttacaagtgatacatttttatttcaaaagaattataaat
tcaaattgatttctcaggcagccacagagttatgcttgtgttatgtgcat
gctttcttccaccatctcatgtccttgttcttttttagaaataatatttt
agttaatttcttgagaatttcatttaatgtatttttaacctattcacact
cacttttccaactcttttcataacttagctctctagtctcatcattcatc
ctaccaagttggatattaatgctttcttgtttttccccatctagtcaagt
ttgtattgttgaaatagtcttggaagtaggaactgggatggtcacctggg
ataatatcattaaagaaaactgactctcatctcagagctgataaaatgcc
atggagtctctgtagtgtagatctcatgccactcttgcctctatggtgaa
tttttatctgagtggtctacagatcttgtgtgcctgccatatcattgtca
ttccata

gaattcagtaatgctgaaggcaaaataagcatgtagacatcgatggcctt
tatatgaaagaataaaacagctttttgaaagatttattatttttatttta
tgtgtatgagtgttttgcctgtatccttaatcatcagggaaatgcaaatc
aaaataaccctgagattccacctcataccagtcagaatggctagattaaa
aactcaggtgacagcagatgcgggcaaggatgtggagaaagaacactcct
tcattgctggtgggactgcaagctggtacaaccactctagaaatcagtct
ggcggttcctcagaaaattggacatagttctatcgggagatccagtactg
tatactgcacttacgtctgttgcttacaaaagccagaagagggcatcata
ttccatagaatgagttataggtggttgtgagcaaatatatggatgctggg
aactgaaccaaggtcctctgcgatggcagtaagcatctctcccattccat
cttggttgttttttgcttgtttgtattgtttatgttgttctgagacactg
tttctctatgaagaaatcacagagatctacctgcttctgtcttccaagtg
ctgggattaaagatgtgtaccaacaaaacatggtttggatgacttgagtt
aaggactttttatgttttctgcaaataacttgtatttattattacatatc
atgtgatttcagcaccataaagatatggttgcaactattcaatcctgctg
ctttaacattgaagcaatcacatataacacagaagcaaatgagcatggct
gtatggaaatagaaattcattttgaaaatgaaacattctgctatttttgg
tccttgagccatagtttgtcaattagtgaagtagatgaccagaaaaaata
atttatattagccaaaaccaatgtatgctttatgtggaattgggtatttt
tcaccttaatttatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76667132_76668300
seq2: B6Ng01-283B12.b_46_1202

seq1  GAATTCTCAATCCCAGCCATGGAGAATTTGGTTATCCACATGACAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAATCCCAGCCATGGAGAATTTGGTTATCCACATGACAGTAAT  50

seq1  GCCACTATTGCACTAGGAAATGCATCTCTCCTTGCAGGTTGATATTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTATTGCACTAGGAAATGCATCTCTCCTTGCAGGTTGATATTATAT  100

seq1  ATCATAGCTACACAACACTGTTGATGACACTTCTTTTCCAGCACACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGCTACACAACACTGTTGATGACACTTCTTTTCCAGCACACTTCA  150

seq1  TAGCACCTTTCTGCCCATATGTTTGCTAGCAAACAGAAAGAGACCTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCTTTCTGCCCATATGTTTGCTAGCAAACAGAAAGAGACCTTCCA  200

seq1  GTTCAACTGCATCTTGATTTATTTATGTCCAACAATCATGGTATGTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACTGCATCTTGATTTATTTATGTCCAACAATCATGGTATGTGTCT  250

seq1  TTATCAATGATAAGGTCTTATCATTTTGTTATGGTGGCAACCAGAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATGATAAGGTCTTATCATTTTGTTATGGTGGCAACCAGAAGCAC  300

seq1  CAGCAATAATTCATGCTGTTTTGTAAGACTATTGAGACTTCCTGTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATAATTCATGCTGTTTTGTAAGACTATTGAGACTTCCTGTCCAAA  350

seq1  AACTCATGAGGAGGTATTTTACATCTGGTACTGGTATTCCCATTTGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATGAGGAGGTATTTTACATCTGGTACTGGTATTCCCATTTGATCA  400

seq1  CTCATGTCTAAGGGTTAGGATGATCCATCTGTGAAGGGTTATTCAATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCTAAGGGTTAGGATGATCCATCTGTGAAGGGTTATTCAATTAA  450

seq1  TACTCTTTTAAAATACTTTTGAATTTCTTTATATGAACAAAAGTGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTTTAAAATACTTTTGAATTTCTTTATATGAACAAAAGTGACCAT  500

seq1  ATTCCTTCTTACAGCCATAATATTGATCAATCCTCTCCATTATCTACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTCTTACAGCCATAATATTGATCAATCCTCTCCATTATCTACTCT  550

seq1  TCTCCTCTCCTCCTTCCTTGTTTAAAACTTTATACCAAATTATTGCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTCCTCCTTCCTTGTTTAAAACTTTATACCAAATTATTGCCCCT  600

seq1  TCCTGCATCCCCTTTGTATATATTCTACTATGCAAACTTTTTCAAATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCCCCTTTGTATATATTCTACTATGCAAACTTTTTCAAATGTC  650

seq1  TTGTTCATTTTTTACAAGTGATACATTTTTATTTCAAAAGAATTATAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTTTTTACAAGTGATACATTTTTATTTCAAAAGAATTATAAAT  700

seq1  TCAAATTGATTTCTCAGGCAGCCACAGAGTTATGCTTGTGTTATGTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTGATTTCTCAGGCAGCCACAGAGTTATGCTTGTGTTATGTGCAT  750

seq1  GCTTTCTTCCACCATCTCATGTCCTTGTTCTTTTTTAGAAATAATATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTCCACCATCTCATGTCCTTGTTCTTTTTTAGAAATAATATTTT  800

seq1  AGTTAATTTCTTGAGAATTTCATTTAATGTATTTTTAACCTATTCACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTTCTTGAGAATTTCATTTAATGTATTTTTAACCTATTCACACT  850

seq1  CACTTTTCCAACTCTTTTCATAACTTAGCTCTCTAGTCTCATCATTCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTCCAACTCTTTTCATAACTTAGCTCTCTAGTCTCATCATTCATC  900

seq1  CTACCAAGTTGGATATTAATGCTTTCTTGTTTTTCCCCATCTAGTCAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGTTGGATATTAATGCTTTCTTGTTTTTCCCCATCTAGTCAAGT  950

seq1  TTGTATTGTTGAAATAGTCTTGGAAGTAGGAACTGGGATGGTCAACCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGTATTGTTGAAATAGTCTTGGAAGTAGGAACTGGGATGGTC-ACCTGG  999

seq1  GAT-ATATCATTAAAGAAAACTGACTCTCCATCTCAAGAGCTGATAAAAT  1049
      ||| |||||||||||||||||||||||| |||||| ||||||||||||||
seq2  GATAATATCATTAAAGAAAACTGACTCT-CATCTC-AGAGCTGATAAAAT  1047

seq1  GCCAATGGAGTCTCTGTTAGTGGTAGAATCTCATGCCCAACTCTTGCCTC  1099
      ||| |||||||||||| |||| |||| ||||||||||  |||||||||||
seq2  GCC-ATGGAGTCTCTG-TAGT-GTAG-ATCTCATGCC--ACTCTTGCCTC  1091

seq1  TATGGTGATATTTTTATCTGAGTTGTTCTACAGATCTTGTGTGTGCTGTC  1149
      |||||||| ||||||||||||| || |||||||||||||||||  ||| |
seq2  TATGGTGA-ATTTTTATCTGAG-TGGTCTACAGATCTTGTGTG-CCTGCC  1138

seq1  ATAATCATTGTCAATCCATA  1169
      || |||||||||| ||||||
seq2  AT-ATCATTGTCATTCCATA  1157


seq1: chr9_76721161_76721745
seq2: B6Ng01-283B12.g_63_647 (reverse)

seq1  AGCAGGTAGATCTCTGTGATTTCTTCATAGAGAAACAGTGTCTCAGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTAGATCTCTGTGATTTCTTCATAGAGAAACAGTGTCTCAGAACA  50

seq1  ACATAAACAATACAAACAAGCAAAAAACAACCAAGATGGAATGGGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACAATACAAACAAGCAAAAAACAACCAAGATGGAATGGGAGAGA  100

seq1  TGCTTACTGCCATCGCAGAGGACCTTGGTTCAGTTCCCAGCATCCATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTGCCATCGCAGAGGACCTTGGTTCAGTTCCCAGCATCCATATA  150

seq1  TTTGCTCACAACCACCTATAACTCATTCTATGGAATATGATGCCCTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCACAACCACCTATAACTCATTCTATGGAATATGATGCCCTCTTC  200

seq1  TGGCTTTTGTAAGCAACAGACGTAAGTGCAGTATACAGTACTGGATCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTTGTAAGCAACAGACGTAAGTGCAGTATACAGTACTGGATCTCC  250

seq1  CGATAGAACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATAGAACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCTAGA  300

seq1  GTGGTTGTACCAGCTTGCAGTCCCACCAGCAATGAAGGAGTGTTCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTGTACCAGCTTGCAGTCCCACCAGCAATGAAGGAGTGTTCTTTCT  350

seq1  CCACATCCTTGCCCGCATCTGCTGTCACCTGAGTTTTTAATCTAGCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCTTGCCCGCATCTGCTGTCACCTGAGTTTTTAATCTAGCCATT  400

seq1  CTGACTGGTATGAGGTGGAATCTCAGGGTTATTTTGATTTGCATTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGTATGAGGTGGAATCTCAGGGTTATTTTGATTTGCATTTCCCT  450

seq1  GATGATTAAGGATACAGGCAAAACACTCATACACATAAAATAAAAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTAAGGATACAGGCAAAACACTCATACACATAAAATAAAAATAAT  500

seq1  AAATCTTTCAAAAAGCTGTTTTATTCTTTCATATAAAGGCCATCGATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTCAAAAAGCTGTTTTATTCTTTCATATAAAGGCCATCGATGTC  550

seq1  TACATGCTTATTTTGCCTTCAGCATTACTGAATTC  585
      |||||||||||||||||||||||||||||||||||
seq2  TACATGCTTATTTTGCCTTCAGCATTACTGAATTC  585


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