BAC Information

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BAC

Clone NameB6Ng01-283G05
Chromosome9 (Build37)
Map Location 5,108,296 - 5,109,340
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283G05.bB6Ng01-283G05.g
ACCGA082362GA082363
length1,1811,038
definitionB6Ng01-283G05.b B6Ng01-283G05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagaatgccttccatttctttcctgaccactgagtagagagtta
ttcagtttccctgtgtgtataggcattctgttttttctgttaaagtctaa
tgtttattcatagtggtctgataacatacaagccattatttgaattttct
tgtatcttttgagtcatgctttttgactgagtgtatggtcaattttttga
gaaggttcagtgacatgcttagaaaaggtgcattctttttcatctttgtg
aaatgttctgtagatatatcctacatctatttgattcacaatctctgtta
gtttcattatttattttctatttcgataatatgtccatttgttagagtgg
ggtgttgaagtctcccactattaatatgtgtgattcaatgtacattataa
tgtttagtgattttttcttttacagatatgggcaccctttcatttggggt
acggatattccagaattcaaaaaccatcctggtagatttttcctttgatg
aatatttagtgttcttctccatctcttttgaataattttggtgtaatgtc
tatcttttttagatattagaatgacaactctagtttacctctagtgtcat
tgcttgaaaaacttttttccagccctttattttgaggtaatatctgtctt
tgttgcagaatcatgttttgcatgcattttatagcctgtttctttttact
agggaactgagtccactaatgttgggagatattaatcaccagtaataatt
gttcatttctgttatttttatgttcatggtgcatgtgtgtgtgtgtgtgt
gtgtgctatgcttggtttgtttttgctggtatagaattacacatttcatc
tagtctccccccccccctttgttgtagttaacctccttgagttactgtta
ggctagatttgtggatattctttaaatttgactgttgttgtcaagattgg
cacctttggttgttttgaggttacaacataatgttccaggtcttttaaga
accttggttgagaagttgagtgttgttctggagaggatctctcctctctt
gttatgtaacttggccttttccttggcaattttaggatcttccatgtctg
gtaaattagacttcattatttggggaatagccttctatccgggttcagct
aatggggctcctgtaagcgttttcctgcatg
gaattctcttacaagtgatttccctaaactcatacatatgcacaggactt
ggtccttgaagacttgtaagtataaggagtgtccacataccttaggggaa
ttggatagaaaggaaagatggcctcaaagttcatcactgcacactaggat
gctttcctactgtgttgttttagaaaataattggcctttgggaatggcta
taagtcatcctttagaactttaaacgttccctaaattcaagtcatgcaca
cagagaaaataaatgtgccagctcttacaggctgaatgggagaggacttt
atctgcctttgtattttcaattttcctcaaagcaaagaatactagaagga
gacccagaaaagagaagagatagtgactctattaagtggtactaaaacaa
tgtttgaggtctcataatcatattaaatatgaatgaaatgcacttacatg
ttataatgttgaagaaaattgatttcacaggcagtaacaatttctcatca
gttaagagtacaaacacatactttcagatgatctatgttctattcttaga
actgagtcaggaagttactaactctctaactccagctatacaagatctga
ctccctgttctgtactatgtgggtatcttatttacacagatttgcaaaga
tacaaacatgcacacatacagttaaaaataaaataaatatgtatagaaaa
gaaaatcaattttgaattcaaccgggaaattttatgttactatttttctt
taattaatgatcttggtaacatccctaatagtgtataattagttttttaa
gtgtagcagagatatttgaggatgtaccttagttggttgagtgtctatcc
tgttcaaggcccaacattttgtttaccatattatataaactgtgtctggt
gaccattatctgtaatcccagcacttgagaagtgaatacagagaattgat
agctcatgtataatgagctatcaattataagtatgatttaaggcattcat
tgatacgtaggtctgtctcaagaaaaaaaataactcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5108296_5109340
seq2: B6Ng01-283G05.g_65_1102 (reverse)

seq1  TAGAGTTATTTTTTTTTCTTGAGACAAGACCTTACGTTATCAATGATTGC  50
      |||||||| |||||||||||||||| ||||| |||| ||||||||| |||
seq2  TAGAGTTA-TTTTTTTTCTTGAGAC-AGACC-TACG-TATCAATGAATGC  46

seq1  CTTAAATTCATACTTATAATTGATAGCTCATTATACATTGAGCTATCAAT  100
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTAAA-TCATACTTATAATTGATAGCTCATTATACA-TGAGCTATCAAT  94

seq1  TCTCTGTATTCACTTCTCAAGTGCTGGGATTACAGATAATGGTCACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTATTCACTTCTCAAGTGCTGGGATTACAGATAATGGTCACCAGA  144

seq1  CACAGTTTATATAATATGGTAAACAAAATGTTGGGCCTTGAACAGGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTTATATAATATGGTAAACAAAATGTTGGGCCTTGAACAGGATAG  194

seq1  ACACTCAACCAACTAAGGTACATCCTCAAATATCTCTGCTACACTTTAAA  250
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACACTCAACCAACTAAGGTACATCCTCAAATATCTCTGCTACAC-TTAAA  243

seq1  AAACTAATTATACACTATTAGGGATGTTACCAAGATCATTAATTAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATTATACACTATTAGGGATGTTACCAAGATCATTAATTAAAGAA  293

seq1  AAATAGTAACATAAAATTTCCCGGTTGAATTCAAAATTGATTTTCTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAACATAAAATTTCCCGGTTGAATTCAAAATTGATTTTCTTTTC  343

seq1  TATACATATTTATTTTATTTTTAACTGTATGTGTGCATGTTTGTATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATATTTATTTTATTTTTAACTGTATGTGTGCATGTTTGTATCTTT  393

seq1  GCAAATCTGTGTAAATAAGATACCCACATAGTACAGAACAGGGAGTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCTGTGTAAATAAGATACCCACATAGTACAGAACAGGGAGTCAGA  443

seq1  TCTTGTATAGCTGGAGTTAGAGAGTTAGTAACTTCCTGACTCAGTTCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATAGCTGGAGTTAGAGAGTTAGTAACTTCCTGACTCAGTTCTAA  493

seq1  GAATAGAACATAGATCATCTGAAAGTATGTGTTTGTACTCTTAACTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAACATAGATCATCTGAAAGTATGTGTTTGTACTCTTAACTGATG  543

seq1  AGAAATTGTTACTGCCTGTGAAATCAATTTTCTTCAACATTATAACATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGTTACTGCCTGTGAAATCAATTTTCTTCAACATTATAACATGT  593

seq1  AAGTGCATTTCATTCATATTTAATATGATTATGAGACCTCAAACATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATTTCATTCATATTTAATATGATTATGAGACCTCAAACATTGTT  643

seq1  TTAGTACCACTTAATAGAGTCACTATCTCTTCTCTTTTCTGGGTCTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTACCACTTAATAGAGTCACTATCTCTTCTCTTTTCTGGGTCTCCTT  693

seq1  CTAGTATTCTTTGCTTTGAGGAAAATTGAAAATACAAAGGCAGATAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTCTTTGCTTTGAGGAAAATTGAAAATACAAAGGCAGATAAAGT  743

seq1  CCTCTCCCATTCAGCCTGTAAGAGCTGGCACATTTATTTTCTCTGTGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCATTCAGCCTGTAAGAGCTGGCACATTTATTTTCTCTGTGTGC  793

seq1  ATGACTTGAATTTAGGGAACGTTTAAAGTTCTAAAGGATGACTTATAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGAATTTAGGGAACGTTTAAAGTTCTAAAGGATGACTTATAGCC  843

seq1  ATTCCCAAAGGCCAATTATTTTCTAAAACAACACAGTAGGAAAGCATCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAAGGCCAATTATTTTCTAAAACAACACAGTAGGAAAGCATCCT  893

seq1  AGTGTGCAGTGATGAACTTTGAGGCCATCTTTCCTTTCTATCCAATTCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCAGTGATGAACTTTGAGGCCATCTTTCCTTTCTATCCAATTCCC  943

seq1  CTAAGGTATGTGGACACTCCTTATACTTACAAGTCTTCAAGGACCAAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTATGTGGACACTCCTTATACTTACAAGTCTTCAAGGACCAAGTC  993

seq1  CTGTGCATATGTATGAGTTTAGGGAAATCACTTGTAAGAGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCATATGTATGAGTTTAGGGAAATCACTTGTAAGAGAATTC  1038