BAC Information

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BAC

Clone NameB6Ng01-284D09
Chromosome9 (Build37)16 (Build37)
Map Location 20,839,604 - 20,840,67217,197,980 - 17,198,664
singlet/doubletsingletsinglet
Overlap geneIcam5
Upstream geneOlfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4
Downstream geneGlp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284D09.bB6Ng01-284D09.g
ACCGA082972GA082973
length1,064886
definitionB6Ng01-284D09.b B6Ng01-284D09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,839,604 - 20,840,672)(17,197,980 - 17,198,664)
sequence
gcggtcccggggcagcccgctgagctccagttaaatgttacaaagaacga
tgacaagcggggcttcttctgcgacgccgccctcgatgtggacggggaaa
ctctaagaaaaaaccagagctctgagcttcgtgtcctgtgtgagtggatg
ctcaccctatctctgtgacctccaaagcccctattacctgctccatcttt
aaccttatctatctcctctgcctcgtgcccgcagatgcacctcgcctgga
tgacttggattgtcccagaagctggacgtggccagagggtccagagcaga
ccctccactgcgaggcccgcggaaaccctgagccctcggtgcactgtgca
aggcctgagggcggggcggtgctagcgctgggcctattgggtccagtgac
ccgtgccctcgcaggcacttaccgatgcacagcagtcaatgggcaaggcc
aggcggtcaaagatgtgaccctgaccgtggaatgtgagtcgggagaggca
tgcatgcccaagttcaccgagttaggggagacgggcctatacggacagga
aagaagctggattctgcagggattgggaaaacactgaagggaagtgtagg
tgggactgtgggactgggtacagtctggcaaaaacaggcagtcaagagag
tgtaccggggagtgctttgtggggatcagtcagcagcatcctgagacctc
aggaaaggggcctgatcacctgaagtgatggccagaacccatgtgaaggt
gggaggagagaacgcctaccttttcatgctttcccacacacatatcgtac
agagtaaatagaaaagtaaaatggtacatgccagagtgagaagctgtctc
ccgaaggcatagaacagtggtaatgcacgcctttaatcccagcaccctgt
aggcaaaggcaggcacatctctgagtttgaggccagcctggtctacagag
caagttccaggccagcctggtctacatagggaattcctgtctcaaaataa
acaaacaaaaaccaaacaaagtcatttcagatgcccagcgctggaacagt
gtagctgcccagaa
gaattctaggaaatatttatacatacacagtgtgcgtgcacacaggggct
tcacatggcctacctagtgtgtgtgcatgcacacaactaccatcacacct
aggtactgcccccaggccatagctgtgggccacatcagtgtgctgctcgc
ttgcttgcccaccgagtgtctagctgtgtggcctctgtgtatgacacctt
tagtcccctttcaccattgctgttagcacctccagaatgtcaggaccctt
atactaggtcatttttcatagaggttagctgaggagttgcacaactcagt
ccaagcagctcagcttggactgcatagtgagaacctacgcaaaattaaat
tgtgaggatttaaaaaaaaatatttatttatttatttatttatttattat
atgtaagtacactgtagctgtcttcagacagcctagaagagggcatcaga
tctcattacagatggttgtgagccatcatgtggttgctgggatttgaact
caggatctttgaaagagcagtcagtgctcttaaccgctgagccatctctc
cagcccgaggatttatttatttatttatttattttttggggttttttttt
ttttttttttttttttggttttttgagacagggtttcactgtgtagtcct
ggctgtcctggaactcgctctgtagaccaggctggccttgaactcagaaa
tccgcctgcctctgtctcccaagtgctgggactaaaggtgtgcgccacca
cgcccagcccgaggattttgttttgttttgtttcgtttttgttttccgag
acagggtttctcctgtatagctctggctgtcctggaaactcactttgtag
acaaggctgggcctcgaactcagaaatccgctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20839604_20840672
seq2: B6Ng01-284D09.b_59_1122

seq1  GCGGTCCCGGGGCAGCCCGCTGAGCTCCAGTTAAATGTTACAAAGAACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCCCGGGGCAGCCCGCTGAGCTCCAGTTAAATGTTACAAAGAACGA  50

seq1  TGACAAGCGGGGCTTCTTCTGCGACGCCGCCCTCGATGTGGACGGGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCGGGGCTTCTTCTGCGACGCCGCCCTCGATGTGGACGGGGAAA  100

seq1  CTCTAAGAAAAAACCAGAGCTCTGAGCTTCGTGTCCTGTGTGAGTGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGAAAAAACCAGAGCTCTGAGCTTCGTGTCCTGTGTGAGTGGATG  150

seq1  CTCACCCTATCTCTGTGACCTCCAAAGCCCCTATTACCTGCTCCATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCCTATCTCTGTGACCTCCAAAGCCCCTATTACCTGCTCCATCTTT  200

seq1  AACCTTATCTATCTCCTCTGCCTCGTGCCCGCAGATGCACCTCGCCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTATCTATCTCCTCTGCCTCGTGCCCGCAGATGCACCTCGCCTGGA  250

seq1  TGACTTGGATTGTCCCAGAAGCTGGACGTGGCCAGAGGGTCCAGAGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGATTGTCCCAGAAGCTGGACGTGGCCAGAGGGTCCAGAGCAGA  300

seq1  CCCTCCACTGCGAGGCCCGCGGAAACCCTGAGCCCTCGGTGCACTGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACTGCGAGGCCCGCGGAAACCCTGAGCCCTCGGTGCACTGTGCA  350

seq1  AGGCCTGAGGGCGGGGCGGTGCTAGCGCTGGGCCTATTGGGTCCAGTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGAGGGCGGGGCGGTGCTAGCGCTGGGCCTATTGGGTCCAGTGAC  400

seq1  CCGTGCCCTCGCAGGCACTTACCGATGCACAGCAGTCAATGGGCAAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGCCCTCGCAGGCACTTACCGATGCACAGCAGTCAATGGGCAAGGCC  450

seq1  AGGCGGTCAAAGATGTGACCCTGACCGTGGAATGTGAGTCGGGAGAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGTCAAAGATGTGACCCTGACCGTGGAATGTGAGTCGGGAGAGGCA  500

seq1  TGCATGCCCAAGTTCACCGAGTTAGGGGAGACGGGCCTATACGGACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCCCAAGTTCACCGAGTTAGGGGAGACGGGCCTATACGGACAGGA  550

seq1  AAGAAGCTGGATTCTGCAGGGATTGGGAAAACACTGAAGGGAAGTGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTGGATTCTGCAGGGATTGGGAAAACACTGAAGGGAAGTGTAGG  600

seq1  TGGGACTGTGGGACTGGGTACAGTCTGGCAAAAACAGGCAGTCAAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTGTGGGACTGGGTACAGTCTGGCAAAAACAGGCAGTCAAGAGAG  650

seq1  TGTACCGGGGAGTGCTTTGTGGGGATCAGTCAGCAGCATCCTGAGACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCGGGGAGTGCTTTGTGGGGATCAGTCAGCAGCATCCTGAGACCTC  700

seq1  AGGAAAGGGGCCTGATCACCTGAAGTGATGGCCAGAACCCATGTGAAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGGGGCCTGATCACCTGAAGTGATGGCCAGAACCCATGTGAAGGT  750

seq1  GGGAGGAGAGAACGCCTACCTTTTCATGCTTTCCCACACACATATCGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGAGAACGCCTACCTTTTCATGCTTTCCCACACACATATCGTAC  800

seq1  AGAGTAAATAGAAAAGTAAAATGGTACATGCCAGAGTGAGAAGCTGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAATAGAAAAGTAAAATGGTACATGCCAGAGTGAGAAGCTGTCTC  850

seq1  CCGAAGGCATAGAACAGTGGTAATGCACGCCTTTAATCCCAGCACCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGCATAGAACAGTGGTAATGCACGCCTTTAATCCCAGCACCCTGT  900

seq1  AGGCAAAGGCAGGCACATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAGGCAGGCACATCTCTGAGTTTGAGGCCAGCCTGGTCTACAGAG  950

seq1  CAAGTTCCAGGCCAGCCTGGTCTACATAGGGAATTCCTGTCTCAAAATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCCAGGCCAGCCTGGTCTACATAGGGAATTCCTGTCTCAAAATAA  1000

seq1  ACAAACAAAAAACCAAAACCAAAGTCCATTCCAGATGCCCCAGCGCTGG-  1049
      |||||| ||||||||||  |||||| |||| |||||| ||||||||||| 
seq2  ACAAAC-AAAAACCAAA--CAAAGT-CATTTCAGATG-CCCAGCGCTGGA  1045

seq1  ACAGTGTAGGCTGCCCAGAA  1069
      |||||||| |||||||||||
seq2  ACAGTGTA-GCTGCCCAGAA  1064

seq1: chr16_17197980_17198664
seq2: B6Ng01-284D09.g_448_819 (reverse)

seq1  GGGCGTGGTGACGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAG----  46
      |||||||||| ||||  |||||| |||||||||||||||| |||||    
seq2  GGGCGTGGTGGCGCACACCTTTAGTCCCAGCACTTGGGAGACAGAGGCAG  50

seq1  --GGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGA  94
        ||||||||||||||||||||||||||||||||| || |||||||||||
seq2  GCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGCGAGTTCCAGGA  100

seq1  CAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAAAACAAACAA  144
      |||||||| ||| |||| |||||||||||||||||||| |||| ||| ||
seq2  CAGCCAGGACTACACAGTGAAACCCTGTCTCAAAAAACCAAAAAAAAAAA  150

seq1  ATATATATATATATACACACACATACACCCTGTCTCAAAAAACCAATACA  194
                                          ||||||        
seq2  ------------------------------------AAAAAA--------  156

seq1  CACACACACTCTTCTACAGAGACAATCTGACAAAGTGACAAAGAATGTAG  244
                                             ||| ||     
seq2  ---------------------------------------AAAAAA-----  162

seq1  GTTTCCACACTTGGAGCCAGGGGCTTCAGTGCATCATCTCACCTCACCAC  294
                                                        
seq2  --------------------------------------------------  162

seq1  GGTCTACTACTCCTCAGAACCCTGCCAATCTAGGCTGGAGATGGCTCAGT  344
                                                        
seq2  --------------------------------------------------  162

seq1  GGTTAAGAGCACTGGGAACTCTTCCAGAGGACCCAGGTTCAATTTCCAGC  394
                                                        
seq2  --------------------------------------------------  162

seq1  AACCCCATGGTGGCTCACAATTGTCTGTAACTCTAGTTCCAGGGGATATG  444
      |||||||                                           
seq2  AACCCCA-------------------------------------------  169

seq1  ACACCCTCATACAGACACACATGCAGACAACACCAAACCACATAACTCAT  494
                                        |||  | |||| | | 
seq2  ---------------------------------AAAAATAAATAAATAAA  186

seq1  TTAAAATTAAAATTCTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAACAC  544
      |  ||||  |||| || ||||||| |||||||||||| || ||||| || 
seq2  T--AAAT--AAATCCTCGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCA-  231

seq1  CCAACTGCTCTTCCAAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGT  594
      |  ||||||||| ||||| ||| ||||||||||||||||||||||||| |
seq2  CTGACTGCTCTTTCAAAGATCCTGAGTTCAAATCCCAGCAACCACATGAT  281

seq1  GGCTCACAACCATCCGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTG  644
      |||||||||||||| |||| ||||||||| |||||||||| |  ||||||
seq2  GGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTAGGCTGTCTG  331

seq1  AAGACAGCTACAGTGTACTTACATATAATAAATAAATAAAT  685
      |||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGCTACAGTGTACTTACATATAATAAATAAATAAAT  372