BAC Information

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BAC

Clone NameB6Ng01-285F01
Chromosome9 (Build37)
Map Location 76,139,814 - 76,277,206
singlet/doubletdoublet
Overlap geneHcrtr2
Upstream geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral
Downstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik, 5730403I07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285F01.bB6Ng01-285F01.g
ACCGA083796GA083797
length949773
definitionB6Ng01-285F01.b B6Ng01-285F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,139,814 - 76,140,706)(76,276,679 - 76,277,206)
sequence
gaattcatagtttagaaagtcctgtattaataaatgatgttattctgaat
tgaatctgaggagaaaaagttcccagcacttaagtcatataacactcccc
tgggacttaacattgtcatttggttggtctggatattgatcttccagtta
aaaatgaatgaaagagagaagattcagtggcaaagtaaaaatgaattagg
tgggagaataaagatggaacatatttagaattgttctatgaaacagatga
aaatattggggaacattttgctaatgtttctaaaagatggcactgtcatg
ggacccattccagaaaatgaaaaatacagaaacaatctaagatatggcca
caacacagcaggtagaagaattaaaaatgaaattgtgaaataagtagtat
tagttaattttttgtcaacttgacataagatagagtcatttggggagagg
actctcaactgagaaaaatgactccagaaactttgccacttggcaagcct
gtaatgcattttcttgactaatgattgacgtgaatgggccctgctcactg
caggcaatgtcacccgtggacaggtgttcctagatgctataagaaagcag
cccagaaacttaggatacccaagatataagatacaacttgccaaacgcat
gaaattcaagaagaacgaagaccaaagtgtggacactttaccttttctta
gaaatgggaacaaaacacccatggaaggagttacagagacaaaatttgga
gctgtgacgaaaggatggaccatctagtgattgccatatgcagggatcca
tcccataatcagcttccaaatgctgacaccattgcatacactagcaagat
tttgctgaaaggacccagatgtagctgtctcttgtgagactatgcccggg
gcctagcaacacagaagtggatgatcacagtcagctattggatgggtca
gaattcttgtgtttctttgagtgctctctcactcctgagactagagtggg
ggtccccgaaagggggacttactttttgggggcttgtccgggatttggga
gcacccagaaaccctgagaataccccttggaggcatgtttgtttgtgtga
gtcttgtatgttgtctgttgtctaagtgtctaagtgtggcaccactgaat
ttgtgtcttggtttttcaattctgagattgtgggtcctacctgggttccc
agttctggtattctgtattctggcagctgccactgtggaccatgaggact
tagtggctgcgggagagagacgtcctaaggccctgcaagctgcaaccctg
gaagacgttccatgggtggaagggggtggaagcagagtcccccctgtcag
gaagggggtcgatgtggaaaccaacctccgtcaggaagtcatgtttggct
ggttgtacaagtccagatgcggatgagtatgcttggatatactgctgtct
ttttttctctgttgctgtcttaattttgtttgtggttttcgtcatgggac
acagaaactgtacatcggaggtaaagtggaatccctccctgcctgtctgt
ctatcttgctcacttgtgtgtcctccattagaccaccttctgattctgtt
ttgctttttgtttgtctggtttcaggtatggttttggtcccaaggggttg
actgattatctttggttttggtttttaaggccggtcttcgggttctgggg
ggccttctcatggagagaggtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_76139814_76140706
seq2: B6Ng01-285F01.b_44_936

seq1  GAATTCATAGTTTAGAAAGTCCTGTATTAATAAATGATGTTATTCTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTTAGAAAGTCCTGTATTAATAAATGATGTTATTCTGAAT  50

seq1  TGAATCTGAGGAGAAAAAGTTCCCAGCACTTAAGTCATATAACACTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGAGGAGAAAAAGTTCCCAGCACTTAAGTCATATAACACTCCCC  100

seq1  TGGGACTTAACATTGTCATTTGGTTGGTCTGGATATTGATCTTCCAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTAACATTGTCATTTGGTTGGTCTGGATATTGATCTTCCAGTTA  150

seq1  AAAATGAATGAAAGAGAGAAGATTCAGTGGCAAAGTAAAAATGAATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATGAAAGAGAGAAGATTCAGTGGCAAAGTAAAAATGAATTAGG  200

seq1  TGGGAGAATAAAGATGGAACATATTTAGAATTGTTCTATGAAACAGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAATAAAGATGGAACATATTTAGAATTGTTCTATGAAACAGATGA  250

seq1  AAATATTGGGGAACATTTTGCTAATGTTTCTAAAAGATGGCACTGTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGGGGAACATTTTGCTAATGTTTCTAAAAGATGGCACTGTCATG  300

seq1  GGACCCATTCCAGAAAATGAAAAATACAGAAACAATCTAAGATATGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCATTCCAGAAAATGAAAAATACAGAAACAATCTAAGATATGGCCA  350

seq1  CAACACAGCAGGTAGAAGAATTAAAAATGAAATTGTGAAATAAGTAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAGCAGGTAGAAGAATTAAAAATGAAATTGTGAAATAAGTAGTAT  400

seq1  TAGTTAATTTTTTGTCAACTTGACATAAGATAGAGTCATTTGGGGAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAATTTTTTGTCAACTTGACATAAGATAGAGTCATTTGGGGAGAGG  450

seq1  ACTCTCAACTGAGAAAAATGACTCCAGAAACTTTGCCACTTGGCAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAACTGAGAAAAATGACTCCAGAAACTTTGCCACTTGGCAAGCCT  500

seq1  GTAATGCATTTTCTTGACTAATGATTGACGTGAATGGGCCCTGCTCACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCATTTTCTTGACTAATGATTGACGTGAATGGGCCCTGCTCACTG  550

seq1  CAGGCAATGTCACCCGTGGACAGGTGTTCCTAGATGCTATAAGAAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAATGTCACCCGTGGACAGGTGTTCCTAGATGCTATAAGAAAGCAG  600

seq1  CCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAACGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAACTTAGGATACCCAAGATATAAGATACAACTTGCCAAACGCAT  650

seq1  GAAATTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTACCTTTTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCAAGAAGAACGAAGACCAAAGTGTGGACACTTTACCTTTTCTTA  700

seq1  GAAATGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAATTTGGA  750

seq1  GCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATATGCAGGGATCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATATGCAGGGATCCA  800

seq1  TCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCAAGAT  850

seq1  TTTGCTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTAT  893
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTAT  893

seq1: chr9_76276679_76277206
seq2: B6Ng01-285F01.g_306_839 (reverse)

seq1  GGACCTCTCTCCATGGGAAGG-CCCCCAGAACCCG-AGACCGGCCT--AA  46
      ||||||||||||||| ||||| ||||||||||||| ||||||||||  ||
seq2  GGACCTCTCTCCATGAGAAGGCCCCCCAGAACCCGAAGACCGGCCTTAAA  50

seq1  AACCAAA--CCAAGATAATCAGTCAACCCCTTGGGACCAAAACCATACCT  94
      |||||||  | |||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACCAAAGATAATCAGTCAACCCCTTGGGACCAAAACCATACCT  100

seq1  GAAACCAGACAAACAAAAAGCAAAACAGAATCAGAAGGTGGTCTAATGGA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGACAAACAAAAAGCAAAACAGAATCAGAAGGTGGTCTAATGGA  150

seq1  GGACACACAAGTGAGCAAGATAGACAGACAGGCAGGGAGGGATTCCACTT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACAAGTGAGCAAGATAGACAGACAGGCAGGGAGGGATTCCACTT  200

seq1  TACCTCCGATGTACAGTTTCTGTGTCCCATGACGAAAACCACAAACAAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCGATGTACAGTTTCTGTGTCCCATGACGAAAACCACAAACAAAA  250

seq1  TTAAGACAGCAACAGAGAAAAAAAGACAGCAGTATATCCAAGCATACTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGCAACAGAGAAAAAAAGACAGCAGTATATCCAAGCATACTCA  300

seq1  TCCGCATCTGGACTTGTACAACCAGCCAAACATGACTTCCTGACGGAGGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCATCTGGACTTGTACAACCAGCCAAACATGACTTCCTGACGGAGGT  350

seq1  TGGTTTCCACATCGACCCCCTTCCTGACAGGGGGGACTCTGCTTCCACCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCACATCGACCCCCTTCCTGACAGGGGGGACTCTGCTTCCACCC  400

seq1  CCTTCCACCCATGGAACGTCTTCCAGGGTTGCAGCTTGCAGGGCCTTAGG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACCCATGGAACGTCTTCCAGGGTTGCAGCTTGCAGGGCCTTAGG  450

seq1  ACGTCTCTCTCCCGCAGCCACTAAGTCCTCATGGTCCACAGTGGCAGCTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTCTCTCCCGCAGCCACTAAGTCCTCATGGTCCACAGTGGCAGCTG  500

seq1  CCAGAATACAGAATACCAGAACTGGGAACCCAGG  528
      ||||||||||||||||||||||||||||||||||
seq2  CCAGAATACAGAATACCAGAACTGGGAACCCAGG  534