BAC Information

Click to search

BAC

Clone NameB6Ng01-285O14
Chromosome9 (Build37)
Map Location 89,282,858 - 89,389,608
singlet/doubletdoublet
Overlap genenone
Upstream geneSnx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285O14.bB6Ng01-285O14.g
ACCGA084239GA084240
length1,115733
definitionB6Ng01-285O14.b B6Ng01-285O14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,282,858 - 89,283,970)(89,388,876 - 89,389,608)
sequence
gaattcactctcatcccaatactaaataaactgcagaaagcatctcctcc
cttcatctactccacagggagaaattattggccttcttttctcatccttt
cttctttctgcccctttccccctttttactctcttgtcaagctatttcct
ttgcttcccctcaccatgatttcttttgcttttatttcatatctcataga
agtttcccattcagtattcagtttcttccctttgtctcctcaactccttt
ttaattacttattatatctgaccttgactaatttttaaattcctagctca
ttctataagtatcttagcaatttttctatcattttcgagggtgtagttgt
tgttccctattgtttattattattatgtttaagtatctgctttgttttcg
aagttgtggttgttagtgtgatattccttttatatggtagtggggactga
gagttcaagcaaagtgtgatcattctttcagggctgggagggatgactta
tctcttgctgttcttgtagaggaccagggtctagtttccaacactcacgt
gatggctcaccatcatctataacttcagttccaggggatcaggtgttgtc
tttacaatgtttgggggtttgaggtttgcaagtgatgtccatacatgcat
aaaaggtagagcactcatgtgtataaaacaacataaattaaagtaaaata
agaaattaaatattaaaaccagaagagaattacatcccaatacatgcaca
ataaatataaggaagcaaggccataggaccgatccaaatgttcacaactt
tttaatagctaaatcagaagacaacaacaattttcacatgccagacaaag
aatctggccgtgtaatttgaaaaaaactcaatgagctcagtaggagaaca
aatgaacaggtgaatgaagtagagaactcagtttgtgcaatgtattttag
cctttgttgttgttcttgtttacagagaatagttgtttataactagtcag
aaaatttactaaagagatgaatattcttgagaaaagaaatcttagaaata
aagagcctcattaaatcaaattgtaaatttcagtgaaaggcatcacctct
tagcctcacaataga
gaattccatgcccaacctcctctgccccacattgtgaagatgaagggcgc
aaatccacacaaagaacataaacacctagaggtgttgcatgctgggtaga
ggtgagatgtcaggagctatggctcacccgttttctccccatttcggtca
gcatttgaccatgctttcaaagccaaagcagtgcaaagacacgagaaaca
tcaaaaaaaaaaaaaaaaaatcattttggctagtttaactaagtcataga
aatactttcagagcatctatgtcccggataccatactccttacacaaagc
ttaatgtccactgttggagtcatatagaaaaaaataaggcagtgtctgtg
gatctatgttcttgatcttcacagcacactcacaagggaagtgctgttca
tgtccacattcatagatgatggcttggaggtgggaggatatctagtaagc
tctcatgacccagagatagctgagagaaattgctcagtggttaagagatc
actgccagggaacccaagatcagtttccagcatccacatcaggtggctaa
cttcagtttaaagggatctatatagaaaattctcctctctctctctctct
ctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgt
tctctgtgtgtgtgtgtgtgagagagagagagagacagagagacagacag
agagaaacagacagagagagatcaaaaattaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89282858_89283970
seq2: B6Ng01-285O14.b_50_1164

seq1  GAATTCACTCTCATCCCAATACTAAATAAACTGCAGAAAGCATCTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCATCCCAATACTAAATAAACTGCAGAAAGCATCTCCTCC  50

seq1  CTTCATCTACTCCACAGGGAGAAATTATTGGCCTTCTTTTCTCATCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTACTCCACAGGGAGAAATTATTGGCCTTCTTTTCTCATCCTTT  100

seq1  CTTCTTTCTGCCCCTTTCCCCCTTTTTACTCTCTTGTCAAGCTATTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTGCCCCTTTCCCCCTTTTTACTCTCTTGTCAAGCTATTTCCT  150

seq1  TTGCTTCCCCTCACCATGATTTCTTTTGCTTTTATTTCATATCTCATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCCTCACCATGATTTCTTTTGCTTTTATTTCATATCTCATAGA  200

seq1  AGTTTCCCATTCAGTATTCAGTTTCTTCCCTTTGTCTCCTCAACTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCATTCAGTATTCAGTTTCTTCCCTTTGTCTCCTCAACTCCTTT  250

seq1  TTAATTACTTATTATATCTGACCTTGACTAATTTTTAAATTCCTAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACTTATTATATCTGACCTTGACTAATTTTTAAATTCCTAGCTCA  300

seq1  TTCTATAAGTATCTTAGCAATTTTTCTATCATTTTCGAGGGTGTAGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAAGTATCTTAGCAATTTTTCTATCATTTTCGAGGGTGTAGTTGT  350

seq1  TGTTCCCTATTGTTTATTATTATTATGTTTAAGTATCTGCTTTGTTTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTATTGTTTATTATTATTATGTTTAAGTATCTGCTTTGTTTTCG  400

seq1  AAGTTGTGGTTGTTAGTGTGATATTCCTTTTATATGGTAGTGGGGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGGTTGTTAGTGTGATATTCCTTTTATATGGTAGTGGGGACTGA  450

seq1  GAGTTCAAGCAAAGTGTGATCATTCTTTCAGGGCTGGGAGGGATGACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAAGCAAAGTGTGATCATTCTTTCAGGGCTGGGAGGGATGACTTA  500

seq1  TCTCTTGCTGTTCTTGTAGAGGACCAGGGTCTAGTTTCCAACACTCACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTGTTCTTGTAGAGGACCAGGGTCTAGTTTCCAACACTCACGT  550

seq1  GATGGCTCACCATCATCTATAACTTCAGTTCCAGGGGATCAGGTGTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTCACCATCATCTATAACTTCAGTTCCAGGGGATCAGGTGTTGTC  600

seq1  TTTACAATGTTTGGGGGTTTGAGGTTTGCAAGTGATGTCCATACATGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATGTTTGGGGGTTTGAGGTTTGCAAGTGATGTCCATACATGCAT  650

seq1  AAAAGGTAGAGCACTCATGTGTATAAAACAACATAAATTAAAGTAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAGAGCACTCATGTGTATAAAACAACATAAATTAAAGTAAAATA  700

seq1  AGAAATTAAATATTAAAACCAGAAGAGAATTACATCCCAATACATGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTAAATATTAAAACCAGAAGAGAATTACATCCCAATACATGCACA  750

seq1  ATAAATATAAGGAAGCAAGGCCATAGGACCGATCCAAATGTTCACAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATAAGGAAGCAAGGCCATAGGACCGATCCAAATGTTCACAACTT  800

seq1  TTTAATAGCTAAATCAGAAGACAACAACAATTTTCACATGCCAGACAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGCTAAATCAGAAGACAACAACAATTTTCACATGCCAGACAAAG  850

seq1  AATCTGGCCGTGTAATTTGAAAAAAACTCAATGAGCTCAGTAGGAGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGCCGTGTAATTTGAAAAAAACTCAATGAGCTCAGTAGGAGAACA  900

seq1  AATGAACAGGTGAATGAAGTAGAGAACTCAGTTTGTGCAATGTATTTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAGGTGAATGAAGTAGAGAACTCAGTTTGTGCAATGTATTTTAG  950

seq1  CCTTTGTTGTTGTTCTTGTTTACAGAGAATAGTTGTTTATAACTAGTCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTGTTGTTCTTGTTTACAGAGAATAGTTGTTTATAACTAGTCAG  1000

seq1  AAAATTTACTAAAGAGATGAATA-TCTTGAGAAAAGGAAATCTTAGAAAT  1049
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  AAAATTTACTAAAGAGATGAATATTCTTGAGAAAA-GAAATCTTAGAAAT  1049

seq1  AAAGAG-CTCATTAAATCAAA-TGTAAAATTCAGTGAAAAGCATCA-CTC  1096
      |||||| |||||||||||||| |||||| |||||||||| |||||| |||
seq2  AAAGAGCCTCATTAAATCAAATTGTAAATTTCAGTGAAAGGCATCACCTC  1099

seq1  TTAGCCTCACCAATAGA  1113
      ||||||||| |||||||
seq2  TTAGCCTCA-CAATAGA  1115

seq1: chr9_89388876_89389608
seq2: B6Ng01-285O14.g_68_800 (reverse)

seq1  TTTAATTTTTGATCTCTCTCTGTCTGTTTCTCTCTGTCTGTCTCTCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTTGATCTCTCTCTGTCTGTTTCTCTCTGTCTGTCTCTCTGTC  50

seq1  TCTCTCTCTCTCTCACACACACACACACAGAGAACACACACACACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCACACACACACACACAGAGAACACACACACACACACA  100

seq1  CACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGG  150

seq1  AGAATTTTCTATATAGATCCCTTTAAACTGAAGTTAGCCACCTGATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTCTATATAGATCCCTTTAAACTGAAGTTAGCCACCTGATGTGG  200

seq1  ATGCTGGAAACTGATCTTGGGTTCCCTGGCAGTGATCTCTTAACCACTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAAACTGATCTTGGGTTCCCTGGCAGTGATCTCTTAACCACTGA  250

seq1  GCAATTTCTCTCAGCTATCTCTGGGTCATGAGAGCTTACTAGATATCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCTCTCAGCTATCTCTGGGTCATGAGAGCTTACTAGATATCCTC  300

seq1  CCACCTCCAAGCCATCATCTATGAATGTGGACATGAACAGCACTTCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCAAGCCATCATCTATGAATGTGGACATGAACAGCACTTCCCTT  350

seq1  GTGAGTGTGCTGTGAAGATCAAGAACATAGATCCACAGACACTGCCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGCTGTGAAGATCAAGAACATAGATCCACAGACACTGCCTTAT  400

seq1  TTTTTTCTATATGACTCCAACAGTGGACATTAAGCTTTGTGTAAGGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTATATGACTCCAACAGTGGACATTAAGCTTTGTGTAAGGAGTA  450

seq1  TGGTATCCGGGACATAGATGCTCTGAAAGTATTTCTATGACTTAGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCCGGGACATAGATGCTCTGAAAGTATTTCTATGACTTAGTTAAA  500

seq1  CTAGCCAAAATGATTTTTTTTTTTTTTTTTTGATGTTTCTCGTGTCTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAAATGATTTTTTTTTTTTTTTTTTGATGTTTCTCGTGTCTTTG  550

seq1  CACTGCTTTGGCTTTGAAAGCATGGTCAAATGCTGACCGAAATGGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTTGGCTTTGAAAGCATGGTCAAATGCTGACCGAAATGGGGAGA  600

seq1  AAACGGGTGAGCCATAGCTCCTGACATCTCACCTCTACCCAGCATGCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGGGTGAGCCATAGCTCCTGACATCTCACCTCTACCCAGCATGCAAC  650

seq1  ACCTCTAGGTGTTTATGTTCTTTGTGTGGATTTGCGCCCTTCATCTTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAGGTGTTTATGTTCTTTGTGTGGATTTGCGCCCTTCATCTTCAC  700

seq1  AATGTGGGGCAGAGGAGGTTGGGCATGGAATTC  733
      |||||||||||||||||||||||||||||||||
seq2  AATGTGGGGCAGAGGAGGTTGGGCATGGAATTC  733