BAC Information

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BAC

Clone NameB6Ng01-286H01
Chromosome9 (Build37)
Map Location 30,539,408 - 30,540,607
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286H01.bB6Ng01-286H01.g
ACCGA084635GA084636
length1,1861,108
definitionB6Ng01-286H01.b B6Ng01-286H01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgaagagcatcacatgactagaggccccatgatgtgtcaccaa
agatactagactataaataaaggataaagcatgagagaaaggtcaagctc
caggaaaagacttcacataaatcctcgtgatccctgttgttccatctagg
aggcgattaagtgtaaaatactgatcttgaatggactccagccaaaattc
acacagcttaaaggctttctggaaggccctgttttttcaaagaagttggt
tagttatagcagcactggtgggtgatcttaaatgaacaggggtgggtaag
cagtttaatgaaccaagtgagctattccagttctagctgaaaattggtat
ccaatctgttgtaaagtagatgttggttctaggacacagacagtatagtc
gtagcaggtagtagtataggtgtgctgaaatgagaggagttttttcttat
atactttatgaggttagaggaaggggaattttcaggtaaaaagcacaaat
gagttcgaagtctgaaaaacagacttttgactaaatcctaagtgtcgagc
aggaatagcaaaatctagaaacaggataaaagaagattatgtagacaaac
acttgagaccttatctgttccaagagagaaaattcaacttgttttaaaac
aaactgataacatgatcacactctgagtagcccattcttgtgagatctaa
cctacttcctggagatgagtatcaatctctatcagaggtgtggcaggcaa
tgtcctagtcattcctcatagcactatctttgtgtctagtaggtttgctt
atttgcaggtttgtttattatgaaaaaatacactagacataaaatgtatc
attttaattattttcaaatgtgcaattccagtaatattaagtatattcac
tttgctataccgcctttgtaagtttcaaagtctacatcactggtagaagt
gggacccccgtggtggtaccatcattcccacccacacccacactcagctc
tctcagagaacttctggcactttctttctgcataacacagagtgttgaac
acagagtaaataaagcccaagctctctgcccagacttcatctacggtcta
gtttgtggtgaactgacatctttcactgcttctgaaacatactccaggca
tggcttaacagccgcctatgcgtgacatctgccttt
gaattcctgtggctgtgatagaacaccatgaccatgagcagcttagagaa
gaaagcacctgtttttggctcaagctcgaggagggatgagcctgtgtggt
ggggctgcaaggcagcagttaggcatggaggccagaccgttggagttctc
tcctcagccatcagcataaggcagacatagtgcatgggctgaaattcaag
tgaggctacacaggtctccctgtggtgtgcttcctccagcaaggccactc
atcctaagctttccaaaccagccccatcaaccaagtctgtgggagacagt
tctcactcaaactaccacagagttccaggcacatttttttatttctattt
aaaccatcttctgttacctcagtggtttataagcagttggatatctctta
cctttgcttcatatagataaggtattttctcttggtggtccccttccccc
ccatttttctattggttattttatttatttacatttcaaatgttatgcct
cttcccaggttcccctccacaacccccctatccctttccctctccccctg
tctctatgagggtgctcccctacctgcctacccattcctgcctcagcacc
ctagcattccccaaccctgtgtcatccatttctccataggaccaagggga
tccccttccagtgatgccctataaggccatcctctgttacatatctagct
ggagtcatgggtccccccaaacccatgtgtactccttggttggtggttta
gtccctgggaactctggggtctggttggttgatattgttgttcttcctgt
tgggttgcaatcccttcagctccttccctaaactcttccattggggtccc
cgggcctcagtccaatggttggctgtgtgcatctacatccgtattggtct
tggtgggttgttttgaagataattttcatctttttttttcaacagtgtct
taattagtgttgttatcatgtttggtgtcttgaacttcctgtatctgcac
atagctggtgacattgacctaagggaaattctcaccatgatcaccttaat
tctcctgtgtcaatttttgtgggtggagaacatctcctggtctccaaatt
ccggcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30539408_30540607
seq2: B6Ng01-286H01.b_45_1230

seq1  GAATTCCTGAAGAGCATCACATGACTAGAGGCCCCATGATGTGTCACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAAGAGCATCACATGACTAGAGGCCCCATGATGTGTCACCAA  50

seq1  AGATACTAGACTATAAATAAAGGATAAAGCATGAGAGAAAGGTCAAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTAGACTATAAATAAAGGATAAAGCATGAGAGAAAGGTCAAGCTC  100

seq1  CAGGAAAAGACTTCACATAAATCCTCGTGATCCCTGTTGTTCCATCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAGACTTCACATAAATCCTCGTGATCCCTGTTGTTCCATCTAGG  150

seq1  AGGCGATTAAGTGTAAAATACTGATCTTGAATGGACTCCAGCCAAAATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGATTAAGTGTAAAATACTGATCTTGAATGGACTCCAGCCAAAATTC  200

seq1  ACACAGCTTAAAGGCTTTCTGGAAGGCCCTGTTTTTTCAAAGAAGTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCTTAAAGGCTTTCTGGAAGGCCCTGTTTTTTCAAAGAAGTTGGT  250

seq1  TAGTTATAGCAGCACTGGTGGGTGATCTTAAATGAACAGGGGTGGGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAGCAGCACTGGTGGGTGATCTTAAATGAACAGGGGTGGGTAAG  300

seq1  CAGTTTAATGAACCAAGTGAGCTATTCCAGTTCTAGCTGAAAATTGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAATGAACCAAGTGAGCTATTCCAGTTCTAGCTGAAAATTGGTAT  350

seq1  CCAATCTGTTGTAAAGTAGATGTTGGTTCTAGGACACAGACAGTATAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTGTTGTAAAGTAGATGTTGGTTCTAGGACACAGACAGTATAGTC  400

seq1  GTAGCAGGTAGTAGTATAGGTGTGCTGAAATGAGAGGAGTTTTTTCTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGTAGTAGTATAGGTGTGCTGAAATGAGAGGAGTTTTTTCTTAT  450

seq1  ATACTTTATGAGGTTAGAGGAAGGGGAATTTTCAGGTAAAAAGCACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTATGAGGTTAGAGGAAGGGGAATTTTCAGGTAAAAAGCACAAAT  500

seq1  GAGTTCGAAGTCTGAAAAACAGACTTTTGACTAAATCCTAAGTGTCGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCGAAGTCTGAAAAACAGACTTTTGACTAAATCCTAAGTGTCGAGC  550

seq1  AGGAATAGCAAAATCTAGAAACAGGATAAAAGAAGATTATGTAGACAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGCAAAATCTAGAAACAGGATAAAAGAAGATTATGTAGACAAAC  600

seq1  ACTTGAGACCTTATCTGTTCCAAGAGAGAAAATTCAACTTGTTTTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGACCTTATCTGTTCCAAGAGAGAAAATTCAACTTGTTTTAAAAC  650

seq1  AAACTGATAACATGATCACACTCTGAGTAGCCCATTCTTGTGAGATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATAACATGATCACACTCTGAGTAGCCCATTCTTGTGAGATCTAA  700

seq1  CCTACTTCCTGGAGATGAGTATCAATCTCTATCAGAGGTGTGGCAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCCTGGAGATGAGTATCAATCTCTATCAGAGGTGTGGCAGGCAA  750

seq1  TGTCCTAGTCATTCCTCATAGCACTATCTTTGTGTCTAGTAGGTTTGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTAGTCATTCCTCATAGCACTATCTTTGTGTCTAGTAGGTTTGCTT  800

seq1  ATTTGCAGGTTTGTTTATTATGAAAAAATACACTAGACATAAAATGTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAGGTTTGTTTATTATGAAAAAATACACTAGACATAAAATGTATC  850

seq1  ATTTTAATTATTTTCAAATGTGCAATTCCAGTAATATTAAGTATATTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTATTTTCAAATGTGCAATTCCAGTAATATTAAGTATATTCAC  900

seq1  TTTGCTATACCGCCTTTGTAAGTTTCAAAGTCTACATCACTGGTAGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATACCGCCTTTGTAAGTTTCAAAGTCTACATCACTGGTAGAAGT  950

seq1  GGGA-CCCCGTGGTGGTACCATCATTCCCACCCACACCCACACTCAGGCT  999
      |||| ||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGACCCCCGTGGTGGTACCATCATTCCCACCCACACCCACACTCA-GCT  999

seq1  CTCTCAGAGAACTTCTGGCACTTTTCTTTCTGCATAACACAGAGTGGTTT  1049
      ||||||||||||||||||||| ||||||||||||||||||||||||  ||
seq2  CTCTCAGAGAACTTCTGGCAC-TTTCTTTCTGCATAACACAGAGTG--TT  1046

seq1  GAACACAGAAGTAAATAAAGCCCAGGCTTCTCTGCCCCAGACTTTCATCT  1099
      |||||||| ||||||||||||||| || |||||| ||||||| |||||||
seq2  GAACACAG-AGTAAATAAAGCCCAAGC-TCTCTG-CCCAGAC-TTCATCT  1092

seq1  AGTGTCTAGTTTGTGTGAAACTTGACATCTTTCACCTGCTTCTGACACAT  1149
      |  ||||||||||||   ||| |||||||||||| |||||||||| ||||
seq2  ACGGTCTAGTTTGTGGTGAAC-TGACATCTTTCA-CTGCTTCTGAAACAT  1140

seq1  ACTTCCCAGGCTATGCCTTAAACAGGCCCCGCTTA-GC-TGACATCTGCC  1197
      |||  |||||| ||| ||| |||||   |||| || || |||||||||||
seq2  ACT--CCAGGC-ATGGCTT-AACAG---CCGCCTATGCGTGACATCTGCC  1183

seq1  TTT  1200
      |||
seq2  TTT  1186