BAC Information

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BAC

Clone NameB6Ng01-286I03
Chromosome9 (Build37)
Map Location 16,653,481 - 16,792,608
singlet/doubletdoublet
Overlap genenone
Upstream geneMtnr1b, Fat3
Downstream geneEG434373, LOC100040074, LOC100040090, LOC244710, LOC100040508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286I03.bB6Ng01-286I03.g
ACCGA084687GA084688
length1,1691,162
definitionB6Ng01-286I03.b B6Ng01-286I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,653,481 - 16,654,423)(16,791,436 - 16,792,608)
sequence
gaattcttggtttagtcctataccccatttttgatttggttgtttggttt
ctcggtgacaagtttttttgaattctttatatattttggatattagcact
ctgcaggatgaggggttagtgaagactttttttttttctcaaattgctga
tttgtcttattgactatgtcctttgcttacaggagctttccagtttcacg
aggtcccatttatcaattcatgaattcgtgatcttagagcctgagccatt
gaagttctgtttaggaaatttccttctgcgacaatgagtgctagactctt
tcccactttcttttctattagattcaatgtattaaatgtatgttgagttc
cttgatccacttggacttgagatccgtgcaacgtgaaaaatatgaatcta
tttccatttttccatatacagactgccagttagacaagcaccatttattg
aagatgctttctttttttccattgtttatttttggcttctttatcaaaga
tcgagtgccagtaagtgtgtggttttatttctggatcatcaattctattc
cattgatcaacgggttagtctttgtaccaataccacgcagtttttaacac
tattgttctgtagtatagcttaaggtcagagattcccccagaagttcttt
aattgttaagaattattttcactattatgggttttttgcttttccagatc
aatttgagaattgctctaaatcataatgggtattgaaaggtaaattgtgt
ccccctccataaagccatgtgttgaaactctaaccagaattacctcatgc
tgtgattccatttggaaacagacacagtaaagagctggttgagtcatctc
cgacccataatagttcctgtccaaaagaattacagggatggaaatggaga
ggagcctgagaaaaagaaaggtccagagacagcccaaagtgggatccagc
tcaagggggaggtcccaaggcctgacacttattactgaccgctatggagt
gctcacaaaaaggagaccttatcatgactgcccctcttaaagaacccaca
agcagctggaaaggagtcaggtgccaggtatttttaccaaaccaattgag
agaaaagccagctgaacccttgttatgattagggaaggctgaagagagaa
cagcagtctcatatttgga

gaattccattcgtgagacttaactcactagggggatgagaaattcaaaat
aaaatgattgaatgtgattgttgaaattatgattgtgttcatctttattt
gaaactgcttgagataaaaagtaccagcaaggcaccagttccttgtgttt
ctagatgctctgccttcagtatggttgaattggaatacagaagctgaggg
cctttctctcttctgagccattggccttcttgatttgtgacttttgtgga
aatagtcaagaataacttcagaggtggctttccctcttgtgttgatctac
aaggagtgacaggcaatgccaaatctgagatggacttggggtgctccttt
tggtgaagtaacctaggattcaggattctgggcattgcctatttcattta
ctttctctgagcaaccttacatttgacaggtaaatatgaggtaacctttg
ccaaatgagctattaggggaaatgttttattagtcacgtaaacagaaaga
ttccatatttgtgatttgtgtggattcatcagcccttctactataataaa
tggtctaataatttctaacatgggacaagagatacatacactaggtttaa
tctgccattcccttctacgttaaaccatagaagcctcttagcacctactg
agaccacatagtgatggtatctttggaaaatatgagagcaaccattttca
ttgttattgaagtcagcactaaccatggagggcatggttatatttaactc
acataaaaatattggcagtggtttgaggtgcagggattaggttaataaag
gagatcccctcttggccttgaggacatgaatgatatgcaaaacattcttt
tttagtttgggtttgtttgttgtttttcccatggacagcatctggacatt
atagtttgaaatatatcaacaccaaatatctacaatccattgttaaataa
aaaaaaaaaaaaaacacactctagtgtggagagattgattagcaagtaag
aacacttgctactttctactctttaaaagagcctgagtttcattcccagc
agccacaataactaataacttcagttcagaaagaaccaaggtcttctcca
tgtccttatcatacaaagtgaacgaagcaactctacacctaacttggact
caggtatattcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_16653481_16654423
seq2: B6Ng01-286I03.b_261_1212

seq1  TCATGAATTCGTGATCTTAGAGCCTGAGCCATTGAAGTTCTGTTTAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATTCGTGATCTTAGAGCCTGAGCCATTGAAGTTCTGTTTAGGAA  50

seq1  ATTTCCTTCTGCGACAATGAGTGCTAGACTCTTTCCCACTTTCTTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTCTGCGACAATGAGTGCTAGACTCTTTCCCACTTTCTTTTCTA  100

seq1  TTAGATTCAATGTATTAAATGTATGTTGAGTTCCTTGATCCACTTGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTCAATGTATTAAATGTATGTTGAGTTCCTTGATCCACTTGGACT  150

seq1  TGAGATCCGTGCAACGTGAAAAATATGAATCTATTTCCATTTTTCCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCCGTGCAACGTGAAAAATATGAATCTATTTCCATTTTTCCATAT  200

seq1  ACAGACTGCCAGTTAGACAAGCACCATTTATTGAAGATGCTTTCTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGCCAGTTAGACAAGCACCATTTATTGAAGATGCTTTCTTTTTT  250

seq1  TCCATTGTTTATTTTTGGCTTCTTTATCAAAGATCGAGTGCCAGTAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTTTATTTTTGGCTTCTTTATCAAAGATCGAGTGCCAGTAAGTG  300

seq1  TGTGGTTTTATTTCTGGATCATCAATTCTATTCCATTGATCAACGGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTTATTTCTGGATCATCAATTCTATTCCATTGATCAACGGGTTA  350

seq1  GTCTTTGTACCAATACCACGCAGTTTTTAACACTATTGTTCTGTAGTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTACCAATACCACGCAGTTTTTAACACTATTGTTCTGTAGTATA  400

seq1  GCTTAAGGTCAGAGATTCCCCCAGAAGTTCTTTAATTGTTAAGAATTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGGTCAGAGATTCCCCCAGAAGTTCTTTAATTGTTAAGAATTATT  450

seq1  TTCACTATTATGGGTTTTTTGCTTTTCCAGATCAATTTGAGAATTGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATTATGGGTTTTTTGCTTTTCCAGATCAATTTGAGAATTGCTCT  500

seq1  AAATCATAATGGGTATTGAAAGGTAAATTGTGTCCCCCTCCATAAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATAATGGGTATTGAAAGGTAAATTGTGTCCCCCTCCATAAAGCCA  550

seq1  TGTGTTGAAACTCTAACCAGAATTACCTCATGCTGTGATTCCATTTGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAAACTCTAACCAGAATTACCTCATGCTGTGATTCCATTTGGAA  600

seq1  ACAGACACAGTAAAGAGCTGGTTGAGTCATCTCCGACCCATAATAGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACAGTAAAGAGCTGGTTGAGTCATCTCCGACCCATAATAGTTCC  650

seq1  TGTCCAAAAGAATTACAGGGATGGAAATGGAGAGGAGCCTGAGAAAAAG-  699
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTCCAAAAGAATTACAGGGATGGAAATGGAGAGGAGCCTGAGAAAAAGA  700

seq1  AAGGTCCAGAGACAGGCCCAAAGTGGGATCCAGCTCAA-GGGGAGGTCCC  748
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  AAGGTCCAGAGACA-GCCCAAAGTGGGATCCAGCTCAAGGGGGAGGTCCC  749

seq1  AAGGCCTGACAC-TATTACTGA-CGCTATGGAGTGCTCACAAAAA-GAGA  795
      |||||||||||| ||||||||| |||||||||||||||||||||| ||||
seq2  AAGGCCTGACACTTATTACTGACCGCTATGGAGTGCTCACAAAAAGGAGA  799

seq1  CC-TATCATGACTG-CCCTCTTAAAGACCCAACAAGCAGCTG--AAAGAG  841
      || ||||||||||| |||||||||||| || |||||||||||  || |||
seq2  CCTTATCATGACTGCCCCTCTTAAAGAACCCACAAGCAGCTGGAAAGGAG  849

seq1  TCAGGTG-CAGGTATTTTTACCCAACCAATGGAGAGAA---GCAGCTG-A  886
      ||||||| |||||||||||||| ||||||| |||||||    |||||| |
seq2  TCAGGTGCCAGGTATTTTTACCAAACCAATTGAGAGAAAAGCCAGCTGAA  899

seq1  CCCCTGTTATTGAATTAGGGAAGGCTGAGGAGA-ACCAGCAGTCTCAATT  935
      ||| ||||||   ||||||||||||||| |||| | |||||||||||   
seq2  CCCTTGTTAT--GATTAGGGAAGGCTGAAGAGAGAACAGCAGTCTCA---  944

seq1  AATTTGGA  943
       |||||||
seq2  TATTTGGA  952


seq1: chr9_16791436_16792608
seq2: B6Ng01-286I03.g_67_1228 (reverse)

seq1  GGAATATACCTGAAGTCACAGTTAGTGGTAGAGTTGCTTTCGTTTCATTT  50
      |||||||||||| ||||  ||||||  |||||||||| |||| |||| ||
seq2  GGAATATACCTG-AGTCCAAGTTAGGTGTAGAGTTGC-TTCG-TTCACTT  47

seq1  TGTATGGATAGAGACAATGAAGGAGGACCTGGGTCTTCTGGAACTGGAGT  100
      ||||| ||||  ||| ||| || ||  | ||| ||||   |||||| |||
seq2  TGTAT-GATAAGGAC-ATGGAGAAGACCTTGGTTCTTTCTGAACTGAAGT  95

seq1  TA-TAGTTATTGTGGCTGCTGGGAATGAAACTCAGGCTCTTTTAAAGAGT  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTATTGTGGCTGCTGGGAATGAAACTCAGGCTCTTTTAAAGAGT  145

seq1  AGAAAGTAGCAAGTGTTCTTACCTGCTAATCAATCTCTCCAACACCTAGA  199
      |||||||||||||||||||||| ||||||||||||||||| ||| |||||
seq2  AGAAAGTAGCAAGTGTTCTTACTTGCTAATCAATCTCTCC-ACA-CTAGA  193

seq1  GTTGTTGTTTTTTTTTTTTTTTTATTTAAACAATGGGATTGTAGAATATT  249
      ||   |||||||||||||||||||||| |||||| ||||||||| |||||
seq2  GT--GTGTTTTTTTTTTTTTTTTATTT-AACAAT-GGATTGTAG-ATATT  238

seq1  TGGTGTTGATATATTTTCAAACTATAATGTCCAGATGCTGTCCATGGGAA  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTGATATA-TTTCAAACTATAATGTCCAGATGCTGTCCATGGGAA  287

seq1  AAACAAACAAACAAA-CCAAACTAAAAAAGAATGTTTTGCATATCATTCA  348
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAC-AACAAACAAACCCAAACTAAAAAAGAATGTTTTGCATATCATTCA  336

seq1  TGTCCTCAAGGCCAAGAGGGGATCTCC-TTATTAACCTAATCCCTGCACC  397
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTCCTCAAGGCCAAGAGGGGATCTCCTTTATTAACCTAATCCCTGCACC  386

seq1  TCAAACCACTGCCAATATTTTTATGTGAGTTAAATATAACCATGCCCTCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCACTGCCAATATTTTTATGTGAGTTAAATATAACCATGCCCTCC  436

seq1  ATGGTTAGTGCTGACTTCAATAACAATGAAAATGGTTGCTCTCATATTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAGTGCTGACTTCAATAACAATGAAAATGGTTGCTCTCATATTTT  486

seq1  CCAAAGATACCATCACTATGTGGTCTCAGTAGGTGCTAAGAGGCTTCTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATACCATCACTATGTGGTCTCAGTAGGTGCTAAGAGGCTTCTAT  536

seq1  GGTTTAACGTAGAAGGGAATGGCAGATTAAACCTAGTGTATGTATCTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAACGTAGAAGGGAATGGCAGATTAAACCTAGTGTATGTATCTCTT  586

seq1  GTCCCATGTTAGAAATTATTAGACCATTTATTATAGTAGAAGGGCTGATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGTTAGAAATTATTAGACCATTTATTATAGTAGAAGGGCTGATG  636

seq1  AATCCACACAAATCACAAATATGGAATCTTTCTGTTTACGTGACTAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACACAAATCACAAATATGGAATCTTTCTGTTTACGTGACTAATAA  686

seq1  AACATTTCCCCTAATAGCTCATTTGGCAAAGGTTACCTCATATTTACCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTCCCCTAATAGCTCATTTGGCAAAGGTTACCTCATATTTACCTG  736

seq1  TCAAATGTAAGGTTGCTCAGAGAAAGTAAATGAAATAGGCAATGCCCAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTAAGGTTGCTCAGAGAAAGTAAATGAAATAGGCAATGCCCAGA  786

seq1  ATCCTGAATCCTAGGTTACTTCACCAAAAGGAGCACCCCAAGTCCATCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAATCCTAGGTTACTTCACCAAAAGGAGCACCCCAAGTCCATCTC  836

seq1  AGATTTGGCATTGCCTGTCACTCCTTGTAGATCAACACAAGAGGGAAAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGGCATTGCCTGTCACTCCTTGTAGATCAACACAAGAGGGAAAGC  886

seq1  CACCTCTGAAGTTATTCTTGACTATTTCCACAAAAGTCACAAATCAAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGAAGTTATTCTTGACTATTTCCACAAAAGTCACAAATCAAGAA  936

seq1  GGCCAATGGCTCAGAAGAGAGAAAGGCCCTCAGCTTCTGTATTCCAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAATGGCTCAGAAGAGAGAAAGGCCCTCAGCTTCTGTATTCCAATTC  986

seq1  AACCATACTGAAGGCAGAGCATCTAGAAACACAAGGAACTGGTGCCTTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACTGAAGGCAGAGCATCTAGAAACACAAGGAACTGGTGCCTTGC  1036

seq1  TGGTACTTTTTATCTCAAGCAGTTTCAAATAAAGATGAACACAATCATAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACTTTTTATCTCAAGCAGTTTCAAATAAAGATGAACACAATCATAA  1086

seq1  TTTCAACAATCACATTCAATCATTTTATTTTGAATTTCTCATCCCCCTAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACAATCACATTCAATCATTTTATTTTGAATTTCTCATCCCCCTAG  1136

seq1  TGAGTTAAGTCTCACGAATGGAATTC  1173
      ||||||||||||||||||||||||||
seq2  TGAGTTAAGTCTCACGAATGGAATTC  1162


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