BAC Information

Click to search

BAC

Clone NameB6Ng01-286K21
Chromosome9 (Build37)
Map Location 18,213,718 - 18,339,467
singlet/doubletdoublet
Overlap geneB020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
Upstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2
Downstream geneOlfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286K21.bB6Ng01-286K21.g
ACCGA084811GA084812
length2821,154
definitionB6Ng01-286K21.b B6Ng01-286K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,339,186 - 18,339,467)(18,213,718 - 18,214,886)
sequence
atcgacccattcaaacttctgcacttctccccatttgctagattgttcta
tgtatctttgatatttccctcttacacacacagacacacacacacacaca
cacacacatgcacacacatacacttattccaacccaggatctattatctc
ccctagattcctgtctatccaccatatacaaacctactatacaaccacac
acccttcagtacatacatatatatatatatatatatatatatatatataa
tgtgtgtgtgtgtttatgtgtgtgtttgtgtg
gaattcaaaaagagccaggccgatctaaactggagcaaagtagcttttgg
actgttttcaggagaaatgtgcaaacagaaatggatggagatttcttata
atttaaggaagttccgcacactgacagaattagtgcaagaagccaagttt
tcttttacaaaaaaaactcacaaaaataaaatactcacggagcatcctga
ccgacccaaaagacccttgactgcctatctgcgcttttacaaggaacaga
gagccaaatactgtcagatgtaccctaagtacagcaacgcacagctgacc
aaaatcctggctgagaaataccgtcagctgccagcagagataaagcagag
atatatcatggacttcaagaaggagaaagaagactttcagaaaaagatga
ggcaattcaagaaaagacatcctgtttcagggcatcctaagaaatctgtg
gtgccccagagtcacccaaccaaagtccctacgaagtcacaaggagatat
aaaaaatgtaaagtctcttgtaaaaacagaatctcccagaacagtttctt
cagatatgaaatttcagggagaacccaggaaaccccctatgaatgcatat
cacaaatttcaccaagagtcatggtcaagtccggagctgaggcatctgtc
ctttaggaagcgctgggttgaaattagcaggcgttggcatcaagtcccag
agaacgagaaagagcattatagcaatcacgtcaagaggctacagaaacaa
tacagggtgaagctggatctctggctcaagagattgtctcctgaggaata
tgctgcatacaaagaggcaaaggccacctgtggtaagcgaaagaacatga
gcatgtctggaggcagaagctccaagtttgggacgaacagagcagtcctc
ctcagagaaaggcctttcaaataaagcctgagagtagaggagctattaga
tccctgggacagattctcaggactattcaggtcatcatgattgcgccagt
catcaagcagatttcacggatgatagtgaggagacgactctagccacctc
ctcagattctaggtagtacagatggagatgatgaatctcttcgggggatt
ctcagattgactcattagcactccaattccaagtcactgttttagaaaca
tcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_18339186_18339467
seq2: B6Ng01-286K21.b_48_329 (reverse)

seq1  CACACAAACACACACATAAACACACACACACATTATATATATATATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAACACACACATAAACACACACACACATTATATATATATATATAT  50

seq1  ATATATATATATATATGTATGTACTGAAGGGTGTGTGGTTGTATAGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATGTATGTACTGAAGGGTGTGTGGTTGTATAGTAGG  100

seq1  TTTGTATATGGTGGATAGACAGGAATCTAGGGGAGATAATAGATCCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATATGGTGGATAGACAGGAATCTAGGGGAGATAATAGATCCTGGG  150

seq1  TTGGAATAAGTGTATGTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATAAGTGTATGTGTGTGCATGTGTGTGTGTGTGTGTGTGTGTGTC  200

seq1  TGTGTGTGTAAGAGGGAAATATCAAAGATACATAGAACAATCTAGCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTAAGAGGGAAATATCAAAGATACATAGAACAATCTAGCAAAT  250

seq1  GGGGAGAAGTGCAGAAGTTTGAATGGGTCGAT  282
      ||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGTGCAGAAGTTTGAATGGGTCGAT  282

seq1: chr9_18213718_18214886
seq2: B6Ng01-286K21.g_67_1220

seq1  GAATTCAAAAAGAGCCAGGCCGATCTAAACTGGAGCAAAGTAGCTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAGAGCCAGGCCGATCTAAACTGGAGCAAAGTAGCTTTTGG  50

seq1  ACTGTTTTCAGGAGAAATGTGCAAACAGAAATGGATGGAGATTTCTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTCAGGAGAAATGTGCAAACAGAAATGGATGGAGATTTCTTATA  100

seq1  ATTTAAGGAAGTTCCGCACACTGACAGAATTAGTGCAAGAAGCCAAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGAAGTTCCGCACACTGACAGAATTAGTGCAAGAAGCCAAGTTT  150

seq1  TCTTTTACAAAAAAAACTCACAAAAATAAAATACTCACGGAGCATCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACAAAAAAAACTCACAAAAATAAAATACTCACGGAGCATCCTGA  200

seq1  CCGACCCAAAAGACCCTTGACTGCCTATCTGCGCTTTTACAAGGAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCCAAAAGACCCTTGACTGCCTATCTGCGCTTTTACAAGGAACAGA  250

seq1  GAGCCAAATACTGTCAGATGTACCCTAAGTACAGCAACGCACAGCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAATACTGTCAGATGTACCCTAAGTACAGCAACGCACAGCTGACC  300

seq1  AAAATCCTGGCTGAGAAATACCGTCAGCTGCCAGCAGAGATAAAGCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTGGCTGAGAAATACCGTCAGCTGCCAGCAGAGATAAAGCAGAG  350

seq1  ATATATCATGGACTTCAAGAAGGAGAAAGAAGACTTTCAGAAAAAGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCATGGACTTCAAGAAGGAGAAAGAAGACTTTCAGAAAAAGATGA  400

seq1  GGCAATTCAAGAAAAGACATCCTGTTTCAGGGCATCCTAAGAAATCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTCAAGAAAAGACATCCTGTTTCAGGGCATCCTAAGAAATCTGTG  450

seq1  GTGCCCCAGAGTCACCCAACCAAAGTCCCTACGAAGTCACAAGGAGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCAGAGTCACCCAACCAAAGTCCCTACGAAGTCACAAGGAGATAT  500

seq1  AAAAAATGTAAAGTCTCTTGTAAAAACAGAATCTCCCAGAACAGTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGTAAAGTCTCTTGTAAAAACAGAATCTCCCAGAACAGTTTCTT  550

seq1  CAGATATGAAATTTCAGGGAGAACCCAGGAAACCCCCTATGAATGCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATGAAATTTCAGGGAGAACCCAGGAAACCCCCTATGAATGCATAT  600

seq1  CACAAATTTCACCAAGAGTCATGGTCAAGTCCGGAGCTGAGGCATCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATTTCACCAAGAGTCATGGTCAAGTCCGGAGCTGAGGCATCTGTC  650

seq1  CTTTAGGAAGCGCTGGGTTGAAATTAGCAGGCGTTGGCATCAAGTCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAAGCGCTGGGTTGAAATTAGCAGGCGTTGGCATCAAGTCCCAG  700

seq1  AGAACGAGAAAGAGCATTATAGCAATCAGGTCAAGAGGCTACAGAAACAA  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAACGAGAAAGAGCATTATAGCAATCACGTCAAGAGGCTACAGAAACAA  750

seq1  TACAGGGTGAAGCTGGATCTCTGGCTCAAGAGATTGTCTCCTGAGGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGTGAAGCTGGATCTCTGGCTCAAGAGATTGTCTCCTGAGGAATA  800

seq1  TGCTGCATACAAAGAGGCAAAGGCCACCTGTGGTAAGCGAAAGAACATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATACAAAGAGGCAAAGGCCACCTGTGGTAAGCGAAAGAACATGA  850

seq1  GCATGTCTGGAGGCAGAAGCTCCAAGTTT-GGACGAACAGAGCAGTCCTC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCATGTCTGGAGGCAGAAGCTCCAAGTTTGGGACGAACAGAGCAGTCCTC  900

seq1  CTCAGAGAAAGGCC-TTCAAATAAAGCCTGGAGAGGTAGAGGAGCTATTA  948
      |||||||||||||| |||||||||||||| |||| |||||||||||||||
seq2  CTCAGAGAAAGGCCTTTCAAATAAAGCCT-GAGA-GTAGAGGAGCTATTA  948

seq1  GAT-CCTGGGACAGATTCCTCAGGGACTATTCAGGGTCATCATGATGGCG  997
      ||| ||||||||||||| |||| |||||||||| |||||||||||| |||
seq2  GATCCCTGGGACAGATT-CTCA-GGACTATTCA-GGTCATCATGATTGCG  995

seq1  CCCAGTCATCCAGGCAAGATTTCACGGATGATAGTGAAGAAGACGACTCT  1047
       ||||||||| ||   |||||||||||||||||||| || ||||||||||
seq2  -CCAGTCATCAAG--CAGATTTCACGGATGATAGTG-AGGAGACGACTCT  1041

seq1  AG-CACCTCCTCAGATTCTA-GTAGTACAGATGAAGATGATTAAAATCTT  1095
      || ||||||||||||||||| |||||||||||| ||||||| ||  ||| 
seq2  AGCCACCTCCTCAGATTCTAGGTAGTACAGATGGAGATGATGAATCTCT-  1090

seq1  CCTCGGGGGAGTCCTCAGATTTAGACTCCATTTTAGCCACTTTCATATTC  1145
        |||||||| | ||||||||  |||||    |||| |||  ||  ||||
seq2  --TCGGGGGA-TTCTCAGATT--GACTC---ATTAG-CAC--TCCAATTC  1129

seq1  CAAGTCACTG-TTTAGAACCATCCA  1169
      |||||||||| ||||||| ||||||
seq2  CAAGTCACTGTTTTAGAAACATCCA  1154