BAC Information

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BAC

Clone NameB6Ng01-287K13
Chromosome9 (Build37)
Map Location 83,404,755 - 83,568,457
singlet/doubletdoublet
Overlap geneSh3bgrl2
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3, LOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200
Downstream geneLOC100039222, Elovl4, Ttk, EG546150, Bckdhb, EG666669
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287K13.bB6Ng01-287K13.g
ACCGA085520GA085521
length1,045474
definitionB6Ng01-287K13.b B6Ng01-287K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,567,851 - 83,568,457)(83,404,755 - 83,405,234)
sequence
gaattcaactgactccatcggtgaggttgacacccttatgatccaatcat
ctggtgccaacaccacctatgggaggggcaaactttcaacaaatacgtct
ttgagggtactttatatccaaaccatagcattctgaccctgtgtgctaaa
gatctgtgtccatttcataatggaaaaatgtgttgcctgtttccatgtgt
ctccaaagtttcaacatcagcaacattgttcgaaaaatctatgtttaacg
tctcctctgaggctggaaacaaacttttatgaggctacgaggctctaaaa
aataaaaacaacatgttatatgcttataacataccagtatgagacagagg
atgtcttcctattccaaagggaagaattcaagatcagactaagcatggag
aacattcaatcttctatcttcactcctggtatccatggtaatgtggtaag
aagtaaacttcaaaggtccaaggaaaaaccatccctacaaccttgcttgc
agccccttacaatggcttacctcttgggctgaccctgcccattgtcttct
gtgttctttgtcagactttccacagtcctggcttctccaacttgctggag
tctccactgcatctttggcaatattaggataaaccaccattttccatatt
gacctttaagacgctgcctgctgggatccgaacccagacacacattactg
atcccactgagctttctttgaaatctcagtggaaacttctccaataccac
acagatgacgccaatgacttctagcagctcagacaacagccttccttgga
tcatggctgtactgacctcgctaagtgtctggattgtgggacatgaggaa
acacttggctagaaagatctttgcaagcagagcaccctggaggtatcttc
tcatagcaaagaatttgaaatgagttaacaacttttatacctagagtcta
catgagtagggtctagtcaggcctgagacgtcttcagatgtcattccttt
ggttttagggcaaagtgttttctccatttttagtggtaataattt

aatataaacgaaatcttcccccaaacgttaaaagtgctaggctccattca
acattagctaggtgcaaattagagtcatatttataaataattcggctctg
ggcaggtgggaaatttttaaattttggaaaatggaaacaacatgcatgat
tgctgaacaatgagagtgctcgtttgcggcttaggaaatgacttggaggt
gcacattggagaacagtctgatactaactcataagccaacccagaaaatt
gctctcacagcttagcaccaggagatgagaagcaatgtaaatattccctt
agagcaggagatagggttctctaaatgttcaccaactacagaatagattt
cactgttaggaacagagcatacatctcacagatcaccccatcaaaattgc
cctcaacaggagaagatattttggaaataaaaactaggtggaagggggag
aaggaggaggaggagtcggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_83567851_83568457
seq2: B6Ng01-287K13.b_47_653 (reverse)

seq1  GTGGAGACTCCAGCAAGTTGGAGAAGCCAGGACTGTGGAAAGTCTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACTCCAGCAAGTTGGAGAAGCCAGGACTGTGGAAAGTCTGACAA  50

seq1  AGAACACAGAAGACAATGGGCAGGGTCAGCCCAAGAGGTAAGCCATTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAGAAGACAATGGGCAGGGTCAGCCCAAGAGGTAAGCCATTGTA  100

seq1  AGGGGCTGCAAGCAAGGTTGTAGGGATGGTTTTTCCTTGGACCTTTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGCAAGCAAGGTTGTAGGGATGGTTTTTCCTTGGACCTTTGAAG  150

seq1  TTTACTTCTTACCACATTACCATGGATACCAGGAGTGAAGATAGAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTTACCACATTACCATGGATACCAGGAGTGAAGATAGAAGATT  200

seq1  GAATGTTCTCCATGCTTAGTCTGATCTTGAATTCTTCCCTTTGGAATAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCTCCATGCTTAGTCTGATCTTGAATTCTTCCCTTTGGAATAGG  250

seq1  AAGACATCCTCTGTCTCATACTGGTATGTTATAAGCATATAACATGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCCTCTGTCTCATACTGGTATGTTATAAGCATATAACATGTTGT  300

seq1  TTTTATTTTTTAGAGCCTCGTAGCCTCATAAAAGTTTGTTTCCAGCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTAGAGCCTCGTAGCCTCATAAAAGTTTGTTTCCAGCCTCA  350

seq1  GAGGAGACGTTAAACATAGATTTTTCGAACAATGTTGCTGATGTTGAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACGTTAAACATAGATTTTTCGAACAATGTTGCTGATGTTGAAAC  400

seq1  TTTGGAGACACATGGAAACAGGCAACACATTTTTCCATTATGAAATGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACACATGGAAACAGGCAACACATTTTTCCATTATGAAATGGAC  450

seq1  ACAGATCTTTAGCACACAGGGTCAGAATGCTATGGTTTGGATATAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTTTAGCACACAGGGTCAGAATGCTATGGTTTGGATATAAAGTA  500

seq1  CCCTCAAAGACGTATTTGTTGAAAGTTTGCCCCTCCCATAGGTGGTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAGACGTATTTGTTGAAAGTTTGCCCCTCCCATAGGTGGTGTTG  550

seq1  GCACCAGATGATTGGATCATAAGGGTGTCAACCTCACCGATGGAGTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGATGATTGGATCATAAGGGTGTCAACCTCACCGATGGAGTCAGT  600

seq1  TGAATTC  607
      |||||||
seq2  TGAATTC  607


seq1: chr9_83404755_83405234
seq2: B6Ng01-287K13.g_65_544

seq1  GAATTCAATATAAACGAAATCTTCCCCCAAACGTTAAAAGTGCTAGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATAAACGAAATCTTCCCCCAAACGTTAAAAGTGCTAGGCTC  50

seq1  CATTCAACATTAGCTAGGTGCAAATTAGAGTCATATTTATAAATAATTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACATTAGCTAGGTGCAAATTAGAGTCATATTTATAAATAATTCG  100

seq1  GCTCTGGGCAGGTGGGAAATTTTTAAATTTTGGAAAATGGAAACAACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGCAGGTGGGAAATTTTTAAATTTTGGAAAATGGAAACAACATG  150

seq1  CATGATTGCTGAACAATGAGAGTGCTCGTTTGCGGCTTAGGAAATGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTGCTGAACAATGAGAGTGCTCGTTTGCGGCTTAGGAAATGACTT  200

seq1  GGAGGTGCACATTGGAGAACAGTCTGATACTAACTCATAAGCCAACCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTGCACATTGGAGAACAGTCTGATACTAACTCATAAGCCAACCCAG  250

seq1  AAAATTGCTCTCACAGCTTAGCACCAGGAGATGAGAAGCAATGTAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCTCTCACAGCTTAGCACCAGGAGATGAGAAGCAATGTAAATAT  300

seq1  TCCCTTAGAGCAGGAGATAGGGTTCTCTAAATGTTCACCAACTACAGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAGAGCAGGAGATAGGGTTCTCTAAATGTTCACCAACTACAGAAT  350

seq1  AGATTTCACTGTTAGGAACAGAGCATACATCTCACAGATCACCCCATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCACTGTTAGGAACAGAGCATACATCTCACAGATCACCCCATCAA  400

seq1  AATTGCCCTCAACAGGAGAAGATATTTTGGAAATAAAAACTAGGTGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCCCTCAACAGGAGAAGATATTTTGGAAATAAAAACTAGGTGGAAG  450

seq1  GGGGAGAAGGAGGAGGAGGAGTCGGGGGGG  480
      ||||||||||||||||||||||||||||||
seq2  GGGGAGAAGGAGGAGGAGGAGTCGGGGGGG  480


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