BAC Information

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BAC

Clone NameB6Ng01-289B13
Chromosome9 (Build37)
Map Location 75,152,266 - 75,332,804
singlet/doubletdoublet
Overlap geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070
Upstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, Myo5a, LOC677501
Downstream geneTmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral, Hcrtr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289B13.bB6Ng01-289B13.g
ACCGA086588GA086589
length1,1781,086
definitionB6Ng01-289B13.b B6Ng01-289B13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,331,622 - 75,332,804)(75,152,266 - 75,153,345)
sequence
gaattccaggccagccagggctacatggtgagagctcatttcaaaacaaa
acaaaacaaaagatgcataatacatacatacatacatacatgaaatgaaa
atggaatctaggggtttctgcatagcccatctcattgcttcatgtaggtc
aaagcgattgttctgtcttggatagacttgatgggctagggatgtacgta
agtagtaggaagcagttcagcgcacaaagcccgagattcagtcccagcac
aaacagggatctaacaacttgactgtacgagacaccagtgcacagctaca
tctcagctctcctctttcttctttgtcttcttctggagggtttgtctcct
ggagagacatgaagcacgggttatagaattcaatagaaggcattcctcga
agctttgtccacactagttctgaactggtgggagaaatctgccacagaga
cctgtgttcaggtcacaacacctgggaagacagacccctgggacctggct
gccctgggtggctgtcacggtaggagggacacttcattcagtgcggcatt
tctatcacattacttgaagtacattattttctttaaatgcttctataaat
tcagtgttttaaagtctgattttagaggctgaagagatggctcttttgag
aggcctcaggtctggttcctggtacccacatggtggctcataaccacctg
tccctctatttagggtagggaaggttccatcattgttttctggaccacag
gcgctgtgtgcatgtggtatacatgcaaggaaaacactcataaatagaaa
aaaaatcttaaaagactgaattttcagaatgcttatgtatgtttttaaaa
tatttacatctgtatacacacataaaaatgagttgacaagtgtcttagtc
agggtttctattcctgcacaaacatcatgaccaagaagcaagttggggag
gaaagggtttattcagcttacacttccattgttgctggttcatcaccaaa
ggaagtcagactggacctcaagtaagtcagaaagcagagctgatgcagag
ccatggagggatgttcttactgccttgcttcccctggctgctcagcctgc
tctcttatgaaaccagaacttaccagccagagaatggtccaccccacagg
actttcccctggatacctaattgagaaa
gaattccacgtggccactggaacaaagtctttttgccccatccctgttga
caggaagggctcgttagctcctcctactaaagacgactggattagaaaac
tactccctttagaaactctaagagggtattcagtctaagagcaggtcatg
gtaacccataactagaatcccagcactcaggaggatgagaccagagattt
atctcgagttcagtgtcagccttgactacagagtgagaacccatctcaga
gatagatagatagatagatagatagatagatagatagatagatagataga
tagataaatagataaatataaataaataagagcattttatttatctattt
tatgccatttatcttttttctgaaatttttaaaacttgttattagccaac
atagttattataatctttcatttaatttttaaatacagctatttctttta
aaactacatttatctctggggtcagaactcagtggtagagcagttggccc
tgggtttggccccagcaccacacatgcacacgtgtgcaacttaagttttt
ttttcctctttctaatcagtgttctaatatgctttttaaattttttttca
cgaaaaaaaaaaaaaaaaacaacaacagaagatatggggaagctcttcct
tttgagaaatccacttttcccaggttttgtgagaactagttattccttcc
ctcaaactgtttttccttcccttcagagaactgagtcctctgatgagcac
tcctgacccagagctgagacccatcactctgtgcacccctagcaacctga
ccaccctccagtctgatggtcacaggcagtagctgtgacaccacagaatg
ggtcctctctggggcgaccgggttgattgttcagtaccacctactaaacg
tgtagtcatcctactgacatgatggctttccaaactgttcccaagtgctg
aaatagaactttataatacttaataaaaataattattggagcaaattgga
tgcacatttttttcctaccattgtagattacatgcctttctcaccgcaca
gcctctggtgtcctcctcttgagggtcagaacagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_75331622_75332804
seq2: B6Ng01-289B13.b_48_1225 (reverse)

seq1  TTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCA-T  49
      ||||||||||||  ||| | |||||||| ||   ||||||  |||||| |
seq2  TTTCTCAATTAGGTATCCA-GGGGAAAGTCC---TGTGGGGTGGACCATT  46

seq1  CTCTGGGCTGGT-AGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCA  98
      |||| ||||||| |||  |||||  ||||||||||||||||||| |||||
seq2  CTCT-GGCTGGTAAGTTCTGGTTTCATAAGAGAGCAGGCTGAGC-AGCCA  94

seq1  GGGGAAGCAAGCCAGTAAGAACATCCCTCCATGGCTTCTGCATCAGCTCC  148
      ||||||||||| ||||||||||||||||||||||| |||||||||||| |
seq2  GGGGAAGCAAGGCAGTAAGAACATCCCTCCATGGC-TCTGCATCAGCT-C  142

seq1  TGCTTTCTGACCTACTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAA-  197
      ||||||||||| |||||||| |||||| ||||||||||||||||||||| 
seq2  TGCTTTCTGACTTACTTGAGGTCCAGT-CTGACTTCCTTTGGTGATGAAC  191

seq1  CAGCAAC-ATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGC  246
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGC  241

seq1  TTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACACTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACACTT  291

seq1  GTCAACTCATTTTTATGTGTGTATACAGATGTAAATAATTTTAAAACATA  346
      ||||||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  GTCAACTCATTTTTATGTGTGTATACAGATGTAAATATTTTAAAAACATA  341

seq1  CATAAGCATTCTGAAAATTCAGTCTTTTAAGATTTTTTTTCTATTTATGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCATTCTGAAAATTCAGTCTTTTAAGATTTTTTTTCTATTTATGA  391

seq1  GTGTTTTCCTTGCATGTATACCACATGCACACAGCGCCTGTGGTCCAGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCCTTGCATGTATACCACATGCACACAGCGCCTGTGGTCCAGAA  441

seq1  AACAATGATGGAACCTTCCCTACCCTAAATAGAGGGACAGGTGGTTATGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGATGGAACCTTCCCTACCCTAAATAGAGGGACAGGTGGTTATGA  491

seq1  GCCACCATGTGGGTACCAGGAACCAGACCTGAGGCCTCTCAAAAGAGCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCATGTGGGTACCAGGAACCAGACCTGAGGCCTCTCAAAAGAGCCA  541

seq1  TCTCTTCAGCCTCTAAAATCAGACTTTAAAACACTGAATTTATAGAAGCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGCCTCTAAAATCAGACTTTAAAACACTGAATTTATAGAAGCA  591

seq1  TTTAAAGAAAATAATGTACTTCAAGTAATGTGATAGAAATGCCGCACTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAAATAATGTACTTCAAGTAATGTGATAGAAATGCCGCACTGA  641

seq1  ATGAAGTGTCCCTCCTACCGTGACAGCCACCCAGGGCAGCCAGGTCCCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGTCCCTCCTACCGTGACAGCCACCCAGGGCAGCCAGGTCCCAG  691

seq1  GGGTCTGTCTTCCCAGGTGTTGTGACCTGAACACAGGTCTCTGTGGCAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGTCTTCCCAGGTGTTGTGACCTGAACACAGGTCTCTGTGGCAGA  741

seq1  TTTCTCCCACCAGTTCAGAACTAGTGTGGACAAAGCTTCGAGGAATGCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCACCAGTTCAGAACTAGTGTGGACAAAGCTTCGAGGAATGCCT  791

seq1  TCTATTGAATTCTATAACCCGTGCTTCATGTCTCTCCAGGAGACAAACCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGAATTCTATAACCCGTGCTTCATGTCTCTCCAGGAGACAAACCC  841

seq1  TCCAGAAGAAGACAAAGAAGAAAGAGGAGAGCTGAGATGTAGCTGTGCAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGAAGACAAAGAAGAAAGAGGAGAGCTGAGATGTAGCTGTGCAC  891

seq1  TGGTGTCTCGTACAGTCAAGTTGTTAGATCCCTGTTTGTGCTGGGACTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTCGTACAGTCAAGTTGTTAGATCCCTGTTTGTGCTGGGACTGA  941

seq1  ATCTCGGGCTTTGTGCGCTGAACTGCTTCCTACTACTTACGTACATCCCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGGGCTTTGTGCGCTGAACTGCTTCCTACTACTTACGTACATCCCT  991

seq1  AGCCCATCAAGTCTATCCAAGACAGAACAATCGCTTTGACCTACATGAAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATCAAGTCTATCCAAGACAGAACAATCGCTTTGACCTACATGAAG  1041

seq1  CAATGAGATGGGCTATGCAGAAACCCCTAGATTCCATTTTCATTTCATGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGATGGGCTATGCAGAAACCCCTAGATTCCATTTTCATTTCATGT  1091

seq1  ATGTATGTATGTATGTATTATGCATCTTTTGTTTTGTTTTGTTTTGAAAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATGTATGTATTATGCATCTTTTGTTTTGTTTTGTTTTGAAAT  1141

seq1  GAGCTCTCACCATGTAGCCCTGGCTGGCCTGGAATTC  1183
      |||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCACCATGTAGCCCTGGCTGGCCTGGAATTC  1178

seq1: chr9_75152266_75153345
seq2: B6Ng01-289B13.g_74_1159

seq1  GAATTCCACGTGGCCACTGGAACAAAGTCTTTTTGCCCCATCCCTGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGTGGCCACTGGAACAAAGTCTTTTTGCCCCATCCCTGTTGA  50

seq1  CAGGAAGGGCTCGTTAGCTCCTCCTACTAAAGACGACTGGATTAGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGCTCGTTAGCTCCTCCTACTAAAGACGACTGGATTAGAAAAC  100

seq1  TACTCCCTTTAGAAACTCTAAGAGGGTATTCAGTCTAAGAGCAGGTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCCTTTAGAAACTCTAAGAGGGTATTCAGTCTAAGAGCAGGTCATG  150

seq1  GTAACCCATAACTAGAATCCCAGCACTCAGGAGGATGAGACCAGAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCATAACTAGAATCCCAGCACTCAGGAGGATGAGACCAGAGATTT  200

seq1  ATCTCGAGTTCAGTGTCAGCCTTGACTACAGAGTGAGAACCCATCTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGAGTTCAGTGTCAGCCTTGACTACAGAGTGAGAACCCATCTCAGA  250

seq1  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  300

seq1  TAGATAAATAGATAAATATAAATAAATAAGAGCATTTTATTTATCTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAATAGATAAATATAAATAAATAAGAGCATTTTATTTATCTATTT  350

seq1  TATGCCATTTATCTTTTTTCTGAAATTTTTAAAACTTGTTATTAGCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATTTATCTTTTTTCTGAAATTTTTAAAACTTGTTATTAGCCAAC  400

seq1  ATAGTTATTATAATCTTTCATTTAATTTTTAAATACAGCTATTTCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTATTATAATCTTTCATTTAATTTTTAAATACAGCTATTTCTTTTA  450

seq1  AAACTACATTTATCTCTGGGGTCAGAACTCAGTGGTAGAGCAGTTGGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACATTTATCTCTGGGGTCAGAACTCAGTGGTAGAGCAGTTGGCCC  500

seq1  TGGGTTTGGCCCCAGCACCACACATGCACACGTGTGCAACTTAAGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGGCCCCAGCACCACACATGCACACGTGTGCAACTTAAGTTTTT  550

seq1  TTTTCCTCTTTCTAATCAGTGTTCTAATATGCTTTTTAAATTTTTTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCTTTCTAATCAGTGTTCTAATATGCTTTTTAAATTTTTTTTCA  600

seq1  CGAAAAAAAAAAAAAAAAACAACAACAGAAGATATGGGGAAGCTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAAAAAAAAAAAAACAACAACAGAAGATATGGGGAAGCTCTTCCT  650

seq1  TTTGAGAAATCCACTTTTCCCAGGTTTTGTGAGAACTAGTTATTCCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAATCCACTTTTCCCAGGTTTTGTGAGAACTAGTTATTCCTTCC  700

seq1  CTCAAACTG-TTTTCCTTCCCTTCAGAGAACTGAGTCCTCTGATGAGCAC  749
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTGTTTTTCCTTCCCTTCAGAGAACTGAGTCCTCTGATGAGCAC  750

seq1  TCCTGACCCAGAGCTGAGACCCATCACTCTGTGCACCCCTAGCAACCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCCAGAGCTGAGACCCATCACTCTGTGCACCCCTAGCAACCTGA  800

seq1  CCACCCTCCAGTCTGATGGTCACAGGCAGTAGCTGTGACACCACAGAAT-  848
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCACCCTCCAGTCTGATGGTCACAGGCAGTAGCTGTGACACCACAGAATG  850

seq1  GGTCCTCTCTGGGGCGACC-GGTTGATTGTTCAGTACCACCTACTAAACG  897
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGTCCTCTCTGGGGCGACCGGGTTGATTGTTCAGTACCACCTACTAAACG  900

seq1  TGTAGTCATCCTACTGACATGATGGCTTTCCAAACTGTTCCCAAGTGCTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCATCCTACTGACATGATGGCTTTCCAAACTGTTCCCAAGTGCTG  950

seq1  AAAATAGAACTTTATAATACTTAAATAAAATAAATTATT-GAGCAAATTG  996
       ||||||||||||||||||||| |||||||  ||||||| ||||||||||
seq2  -AAATAGAACTTTATAATACTT-AATAAAAATAATTATTGGAGCAAATTG  998

seq1  GATGCACCATTTTTTTCCTACCATTGTAGATTACATGCC-TTCTCACCGC  1045
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGCA-CATTTTTTTCCTACCATTGTAGATTACATGCCTTTCTCACCGC  1047

seq1  ACAG-CTCT-GTGT-CTCTCCTTGAGGGTCAG-ACAGAA  1080
      |||| |||| |||| |||  |||||||||||| ||||||
seq2  ACAGCCTCTGGTGTCCTCCTCTTGAGGGTCAGAACAGAA  1086