BAC Information

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BAC

Clone NameB6Ng01-289O07
Chromosome9 (Build37)
Map Location 118,887,029 - 118,887,981
singlet/doubletsinglet
Overlap geneCtdspl
Upstream geneLOC100039681, Azi2, 2010110K16Rik, Eomes, Golga4, Itga9, LOC100039768
Downstream geneVill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289O07.bB6Ng01-289O07.g
ACCGA087171GA087172
length1,096964
definitionB6Ng01-289O07.b B6Ng01-289O07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctcacagtggcctgtgtgacaccctcaacaactatgagcactc
acaagttaggagaaccttacagctcagacttagcttgatttgttaccaga
acatgtggtggcttcagggttaggcataaaccattctctctgggtatgca
tatcacagtggtaatagcttgcaagcttcagagacctctcaggacacagc
agtggcccacgcctgtgtacttaaggtaggagctgtcttgcagagctgtc
ttcagtcatttctaccttgtgctcgctctcctcactgtacaatccttccc
ttgagtttcaagattttgaatcccaggaggggcttttcaccgacaatata
atctgtcccttatgctaccctaagacataaaaaaccccaacaagaacaaa
atgcaagccagcatttccatctgtcttccctcttgtttgacttacccgcc
agatcatagtctgttagagaaggcacacacatcttctccccttggtcact
tctccattgtgggcaagttccctttaggcattgactgcctcagtgtgcag
acaactctcttacctgtgtgctaccttcacagtttacagcatgctttcta
acccactagtcttttggggagatctctccatgtacatactgcatggagca
agacggccattgtaggatttcttccaagcatgttttaccctgagtcatct
ttgctacattttgtaatatacatataattaatataggtgtgtatcagtgt
gtgagtgtgtgcacatgtatacaggtatctgtgggaggcagaagatgtga
gatcccctggagctggagttacaggtgattgtgagccacctaatgtgggt
gctggaaactgaactagagtcctctgtaaaatctgtgtgcacttttaatc
actgaacccgtctctgtagctctctactgttttatctcttcctttattaa
aaattgattttttccccacggcagatattttttaaatgtaataattaatt
tattttaatggttattccctgtagttgtccttctgaacacttctctgaag
agaggcattctagattttggttccgggaatggcttgtgcgagggca
gaattcactctgatctcatcgtgaagttctcctgtggattcagggaggtg
gaagttaacctgtagggctgaaacggaagcttgcatacacagagggcctt
ggtgtgctctcagccatgcggcacgtggtaaatggagccctctgttctta
aggtagaaaacaagcaaagtcctcagtgtgtttctgaagaagtctgaaag
cctgtatgtcttccccatgaccgtgtagcagcaaaccacaagtggttaat
ggaacaaaagtcccttttgtagggtcagaacacaaacacagcacaggctc
tgcctagaaacccgcatgaaaggaaggatgctgggagccaccctccgggc
ttgcttctgaaaggcatcacctgggagcacccgccaagtgtcagtcacag
cgtgcaacaatactcgaaacgtggatgtgtgattaaaaactggcccatag
aaagtggcgcacctccaacagtgcactctctctcccctacccccgctaac
tgaatagccagcatcatgtgtctgtataaccatgtctcacctaagctaca
tttctgtattccttattgtgttattcttcttccttgatttgtgtgtgttt
gcgtagtgtctatgtctgtatgactatgtaactgtgtgtacatgggtgag
tgggtgtgcgtgcagatatgtgcacttgtgtgtggagaccaggggctcac
cactgagtgatttccactgttggttttgtttctacctgatcttttggaag
ttgggggtcttttccctaaaccagtacttcatctgtgtggttagattggc
tggccagcatgctccaaggaaatccacctgtctccacaccttcccttata
cttcccaccccagcattagagttagaagtgcaggtccatgccttcagttg
tatggtgggatgagggattgaagccaggtcctggtgtctggcactttcaa
ccactataccattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_118887029_118887981
seq2: B6Ng01-289O07.g_68_1031

seq1  GAATTCACTCTGATCTCATCGTGAAGTTCTCCTGTGGATTCAGGGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGATCTCATCGTGAAGTTCTCCTGTGGATTCAGGGAGGTG  50

seq1  GAAGTTAACCTGTAGGGCTGAAACGGAAGCTTGCATACACAGAGGGCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAACCTGTAGGGCTGAAACGGAAGCTTGCATACACAGAGGGCCTT  100

seq1  GGTGTGCTCTCAGCCATGCGGCACGTGGTAAATGGAGCCCTCTGTTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTCTCAGCCATGCGGCACGTGGTAAATGGAGCCCTCTGTTCTTA  150

seq1  AGGTAGAAAACAAGCAAAGTCCTCAGTGTGTTTCTGAAGAAGTCTGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAAAACAAGCAAAGTCCTCAGTGTGTTTCTGAAGAAGTCTGAAAG  200

seq1  CCTGTATGTCTTCCCCATGACCGTGTAGCAGCAAACCACAAGTGGTTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATGTCTTCCCCATGACCGTGTAGCAGCAAACCACAAGTGGTTAAT  250

seq1  GGAACAAAAGTCCCTTTTGTAGGGTCAGAACACAAACACAGCACAGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAAAGTCCCTTTTGTAGGGTCAGAACACAAACACAGCACAGGCTC  300

seq1  TGCCTAGAAACCCGCATGAAAGGAAGGATGCTGGGAGCCACCCTCCGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGAAACCCGCATGAAAGGAAGGATGCTGGGAGCCACCCTCCGGGC  350

seq1  TTGCTTCTGAAAGGCATCACCTGGGAGCACCCGCCAAGTGTCAGTCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTGAAAGGCATCACCTGGGAGCACCCGCCAAGTGTCAGTCACAG  400

seq1  CGTGCAACAATACTCGAAACGTGGATGTGTGATTAAAAACTGGCCCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCAACAATACTCGAAACGTGGATGTGTGATTAAAAACTGGCCCATAG  450

seq1  AAAGTGGCGCACCTCCAACAGTGCACTCTCTCTCCCCTACCCCCGCTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGCGCACCTCCAACAGTGCACTCTCTCTCCCCTACCCCCGCTAAC  500

seq1  TGAATAGCCAGCATCATGTGTCTGTATAACCATGTCTCACCTAAGCTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCCAGCATCATGTGTCTGTATAACCATGTCTCACCTAAGCTACA  550

seq1  TTTCTGTATTCCTTATTGTGTTATTCTTCTTCCTTGA-TTGTGTGTGTTT  599
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCTGTATTCCTTATTGTGTTATTCTTCTTCCTTGATTTGTGTGTGTTT  600

seq1  GCGTAGTGTCTATGTCTGTATGACTATGTAACTGTGTGTACATGGGTGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTAGTGTCTATGTCTGTATGACTATGTAACTGTGTGTACATGGGTGAG  650

seq1  TGGGTGTGCGTGCAGATATGTGCACTTGTGTGTGGAGACCAGGGGCTCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTGCGTGCAGATATGTGCACTTGTGTGTGGAGACCAGGGGCTCAC  700

seq1  CACTGAGTGATTTCCACTGTTGG-TTTGTTTCTACCTGATC-TTTGGAAG  747
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  CACTGAGTGATTTCCACTGTTGGTTTTGTTTCTACCTGATCTTTTGGAAG  750

seq1  TTGGGGGTC-TTTCCCTAAACCCAGTAC-TCA-CTGTGTGGTTAGATTGG  794
      ||||||||| |||||||||| ||||||| ||| |||||||||||||||||
seq2  TTGGGGGTCTTTTCCCTAAA-CCAGTACTTCATCTGTGTGGTTAGATTGG  799

seq1  CTGGCCAGCATGCTCCAAGG-AATCCACCTGTCTCCACACCTT-CCTTAT  842
      |||||||||||||||||||| |||||||||||||||||||||| ||||||
seq2  CTGGCCAGCATGCTCCAAGGAAATCCACCTGTCTCCACACCTTCCCTTAT  849

seq1  ACTTCCCA-CCCAGCATTAGAGTTAGAAGTGCAGGTCCATGCC-TCAGTT  890
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  ACTTCCCACCCCAGCATTAGAGTTAGAAGTGCAGGTCCATGCCTTCAGTT  899

seq1  GTAT-GTGGGATGAGGGATTGAAGCCAGGTCCTGGTGTCTGGCAC-TTCA  938
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTATGGTGGGATGAGGGATTGAAGCCAGGTCCTGGTGTCTGGCACTTTCA  949

seq1  CCCACTAAACCATTC  953
       |||||| |||||||
seq2  ACCACTATACCATTC  964