BAC Information

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BAC

Clone NameB6Ng01-290K11
Chromosome9 (Build37)
Map Location 109,359,688 - 109,502,518
singlet/doubletdoublet
Overlap geneFbxw19, LOC635668, Fbxw15
Upstream geneKlhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16
Downstream geneEG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290K11.bB6Ng01-290K11.g
ACCGA087742GA087743
length926940
definitionB6Ng01-290K11.b B6Ng01-290K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,359,688 - 109,360,359)(109,501,846 - 109,502,518)
sequence
gaattcaggctcctgcctaagttactgccccccacagcccccacaagaga
agcatgcctagcagtcacataggcaatgtcccaagcttctgaccttcagg
ctagacttctccccagttacctagcaacagaaaagttagcagctcacttt
aaaaggggctgtttggcccctccttactctctcattcctttggtctctta
cctctcacttctctcactcttctctcctctctctttatcttctcctctcc
cctcccctactctcccctcccctcccatcttctctcttctcttactttct
ttctctctagccttctctctctctctctctctctctctctctctctctct
ctctctctctctctcccttctctctttcttcctgcctttctacaataaag
ctctaaaaccatagacagtctctgctcatcaaggtttcacttaaacttgc
atgcgtgggaacctctcttctttcttccctctctttctttcttccctctc
cccattaactttggggctacagggtgtggccccggggcctgctggttggg
ctgacctttgttcacaaacccccccatccccatcaagtgggtcagaggct
tggatgcccacctggggctgagtggaaaagcgtctggcaccctcccatgt
ctggttttcaagagcataggtggaactctggcaggatgtgggatgcctct
tccccccttcttccccagtccccttttttttagttcccacaaattgcccc
ctgaaagatgtctactgatagggctttctgtgacttgaggaaaatgtgac
tcaggtcttggctgggtgaggacaatcaaaagtgtgctgatttctatgct
agtcacatagaatgagaagatcacccctatgttcaagtttgagggtgcac
acatgtgaacacatgtagtagagtgt
gaattcttgacctcttttttttctctcagatcctttttaaatcaagggca
tatgggctggggagatgactcagctgtgaagaccactggcctggattcaa
ttgttagcacacagagcagctaacaactgtctgtgatccatttcagagga
tatgttacccttcccacagataggcaaaacagcaagagacataaaaatct
taaaaaaaaaaaaaaaaaagaaaaaagaaaaaaaaaagaagcaaagaaaa
aataattgttaaaagccaggaggtagcagagcacacctttaatctcacct
cttgggagacagagtcagccagaactgagtacaagccagcctggtttaca
gaacgagtcccaggacagtcagggctatgtatatgtgttcacagagaaac
cctgccttgaaaatgttaacatgggctgggcgtggtggcacacaccttta
atcccagcactcaggaggcagaggcaggcggatttctgagttcaaggcca
gcctggtctacaaagtgagttccaggacagccagggctatacagagaaac
cctgactcgaaaaaccaaaaaataaaataaaataaaaataaaaataaaga
aaatgttaacatggaaaattaaagttaattgagcttatggtttaaaagga
ttagagtcaatagggtagagcaaaggcatggaggcaggaacagtggagag
tgcacatattgatctgcacatagaaagcaaagagacaccatgggaatgac
aagtctttttaaaactcaaagactatccacagtgacacaacccctccaac
agaaccacacctcctaatccttccaaaatagttccaccaactattggcca
agcttatgggactcattctctttcagattaccacacatgcacacacgtgc
aaatcacacagaatcacgcagaaagaaaccccatagctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109359688_109360359
seq2: B6Ng01-290K11.b_295_973

seq1  TCCCCTCCCCTACTCTCCCCTCCCCTCCCATCTTCTCTCTTCTCTTACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCTACTCTCCCCTCCCCTCCCATCTTCTCTCTTCTCTTACTT  50

seq1  TCTTTCTCTCTAGCCT--TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  98
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCTAGCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  100

seq1  TCTCTCTCTCTCTCTCTCCCTTCTCTCTTTCTTCCTGCCTTTCTACAATA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCCCTTCTCTCTTTCTTCCTGCCTTTCTACAATA  150

seq1  AAGCTCTAAAACCATAGACAGTCTCTGCTCATCAAGGTTTCACTTAAACT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTAAAACCATAGACAGTCTCTGCTCATCAAGGTTTCACTTAAACT  200

seq1  TGCATGCGTGGGAACCTCTCTTCTTTCTTCCCTCTCTTTCTTTCTTCCCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCGTGGGAACCTCTCTTCTTTCTTCCCTCTCTTTCTTTCTTCCCT  250

seq1  CTCCCCATTAACTTTGGGGCTACAGGGTGTGGCCCCGGGGCCTGCTGGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATTAACTTTGGGGCTACAGGGTGTGGCCCCGGGGCCTGCTGGTT  300

seq1  GGGCTGACCTTTGTTCACAAACCCCCCCATCCCCATCAAGTGGGTCAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGACCTTTGTTCACAAACCCCCCCATCCCCATCAAGTGGGTCAGAG  350

seq1  GCTTGGATGCCCACCTGGGGCTGAGTGG-AAAGCGTCTGGCAGCCCTCCC  397
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  GCTTGGATGCCCACCTGGGGCTGAGTGGAAAAGCGTCTGGCA-CCCTCCC  399

seq1  ATGTCTGGTTTTCAAGAGCATAGGTGGAACTCTGGCAGGATGT-GGATGC  446
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGTCTGGTTTTCAAGAGCATAGGTGGAACTCTGGCAGGATGTGGGATGC  449

seq1  CTCTT-CCCCCTTCTTCCCCAGTCCCC--TTTTTTAGTTCCCACAAATTG  493
      ||||| |||||||||||||||||||||  |||||||||||||||||||||
seq2  CTCTTCCCCCCTTCTTCCCCAGTCCCCTTTTTTTTAGTTCCCACAAATTG  499

seq1  -CCCCTGAAAGATGTCTACTGATAGGGC-TTCTGTGAC-TGAGGAAAAAT  540
       ||||||||||||||||||||||||||| ||||||||| ||||| |||||
seq2  CCCCCTGAAAGATGTCTACTGATAGGGCTTTCTGTGACTTGAGG-AAAAT  548

seq1  GTGACTCAGGTCTTGGCT-GGTGAGGACAGATCAGAAGTGGGCTGAATTT  589
      |||||||||||||||||| |||||||||| |||| ||||| |||| ||||
seq2  GTGACTCAGGTCTTGGCTGGGTGAGGACA-ATCAAAAGTGTGCTG-ATTT  596

seq1  CTATGCTAGTCTACATAG-ATGTGAAGATCA-CCCTATGTTCAAGTATGA  637
      ||||||||||| |||||| ||| |||||||| |||||||||||||| |||
seq2  CTATGCTAGTC-ACATAGAATGAGAAGATCACCCCTATGTTCAAGTTTGA  645

seq1  GGGTGCACACATGTGTACACATGTAGTAAGAGTGT  672
      ||||||||||||||| ||||||||||| |||||||
seq2  GGGTGCACACATGTGAACACATGTAGT-AGAGTGT  679

seq1: chr9_109501846_109502518
seq2: B6Ng01-290K11.g_68_740 (reverse)

seq1  TTGCTCTACCCTATTGACTCTAATCCTTTTAAACCATAAGCTCAATTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTACCCTATTGACTCTAATCCTTTTAAACCATAAGCTCAATTAAC  50

seq1  TTTAATTTTCCATGTTAACATTTTCTTTATTTTTATTTTTATTTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTCCATGTTAACATTTTCTTTATTTTTATTTTTATTTTATTTT  100

seq1  ATTTTTTGGTTTTTCGAGTCAGGGTTTCTCTGTATAGCCCTGGCTGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTGGTTTTTCGAGTCAGGGTTTCTCTGTATAGCCCTGGCTGTCCT  150

seq1  GGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGC  200

seq1  CTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACCACGCCCAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCACCACGCCCAGCC  250

seq1  CATGTTAACATTTTCAAGGCAGGGTTTCTCTGTGAACACATATACATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTAACATTTTCAAGGCAGGGTTTCTCTGTGAACACATATACATAGC  300

seq1  CCTGACTGTCCTGGGACTCGTTCTGTAAACCAGGCTGGCTTGTACTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTGTCCTGGGACTCGTTCTGTAAACCAGGCTGGCTTGTACTCAGT  350

seq1  TCTGGCTGACTCTGTCTCCCAAGAGGTGAGATTAAAGGTGTGCTCTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGACTCTGTCTCCCAAGAGGTGAGATTAAAGGTGTGCTCTGCTA  400

seq1  CCTCCTGGCTTTTAACAATTATTTTTTCTTTGCTTCTTTTTTTTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGGCTTTTAACAATTATTTTTTCTTTGCTTCTTTTTTTTTTCTTT  450

seq1  TTTCTTTTTTTTTTTTTTTTTTAAGATTTTTATGTCTCTTGCTGTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTTTTTTTTTTTTTAAGATTTTTATGTCTCTTGCTGTTTTGC  500

seq1  CTATCTGTGGGAAGGGTAACATATCCTCTGAAATGGATCACAGACAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGGGAAGGGTAACATATCCTCTGAAATGGATCACAGACAGTTG  550

seq1  TTAGCTGCTCTGTGTGCTAACAATTGAATCCAGGCCAGTGGTCTTCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCTCTGTGTGCTAACAATTGAATCCAGGCCAGTGGTCTTCACAG  600

seq1  CTGAGTCATCTCCCCAGCCCATATGCCCTTGATTTAAAAAGGATCTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCATCTCCCCAGCCCATATGCCCTTGATTTAAAAAGGATCTGAGA  650

seq1  GAAAAAAAAGAGGTCAAGAATTC  673
      |||||||||||||||||||||||
seq2  GAAAAAAAAGAGGTCAAGAATTC  673