BAC Information

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BAC

Clone NameB6Ng01-291B03
Chromosome9 (Build37)
Map Location 44,522,735 - 44,676,500
singlet/doubletdoublet
Overlap genePhldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1
Upstream genePvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh
Downstream geneAtp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291B03.bB6Ng01-291B03.g
ACCGA088055GA088056
length1,0821,134
definitionB6Ng01-291B03.b B6Ng01-291B03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,675,420 - 44,676,500)(44,522,735 - 44,523,870)
sequence
gaattccctcttactttctctgttcttcttgattttgtttttgtttttga
gaccaggctggccttgtattcacagagatctacctgcttctgcctcccaa
gtactggaatcataggcatgccatacccgttggtctgttcatattctctc
tctctccctccctcctcctcctcctcttcctcctcttcctcctcttcctc
ctcctcctcagtaattttttttgaaattcacagtgcattccaattgcatt
ctctcttcttcttgaaagactccagtatcagagcactttaaaaaatacca
gggactttctttaaaaagtagttaatgccatctaatatgggcttctcaga
acttgatagtaagcttccaaacatgaaatagttatcaatagaccatgagt
tctccaactatattatttgaccattatgtcctaaaagataatgaactgac
agagaccttggaagccttgttgctttcctaaatgggatgttcatgttatt
cttcacactgcctttgcggtgagatggccctgtttgttttagagggaagg
aagttgtggctttctcagtgatacccaacttgctattggtcattcagtag
cccgtagtcctaaaaggaaagatgaaacttgattttgcatcttgagaaca
aaccaggagagaactgaactcttacagtggaagcatgcacttgagagcca
ggcatggcagctctgcctgcagcccctgcacttgggagggcgagccaaga
gaatcgctgcttagtgagtagcaggccagccaggactacatcccaagacc
tttatctcagaaggaaaaaagaaaaaaaaaaaaagagggagggaggaggg
gagcaaaaaacaaacaaacacccctaaacttgaattaggatataacttaa
atgaaggtaactgcttcagggtggtaaggagccaagtcctcttacacgag
aagaaccatcattcaaagtgaacttagtgtttgtttactattccagacta
cagatctggttccctgagagaagaagactactcctcccccccaccccctg
gtgatcctaaacaatttctgcagtgtgcctgt
gaattcaaaaccaagatctagagcctgggagacggctctgctggcaaagc
acctggaacctgagttcaatcctccagtcactctagtgctgggaaggcag
agacccaagaacctgaggccttgctgtccagccagttcagctaaaccagt
atgtctcaggttcaacgagagactgtctcaaaaaacaaaaccaggccagg
cagtagtggctcatgcctttaaacccagcacttttcggagacaggtggat
ttctgagtttgaagccagcctgcctggtctacagaatgagttccaggaca
gccaaggctacacagagaaaccctgtcttaacgctccccccccccaaaaa
aacaaaacaaacaaacgaaaacaccgaagagcaattgaggaagacactac
ccactcatctctggcctacacacacagacacacacctgcacacacgtata
caaaactaaaaaatttagaaagccttagtgatttcaaaggcggtttctct
ccagggtatcaggatggtgagacacaggtcacttagcctgatggttcatc
ctgaatccgcccaggccctgtacatggcccctcctgttctgccggctggc
ctgcccacaccctggcagaggcaccgccttgggcagcggcagcctccctg
gcattggctcaccagcctctccatctcctgctcccggagccgctcttggc
gctgccgacggtggtactccagaagttcgtcctcattgtcgctgatctcc
gtgatgctgtttttcctctcccttggaatgggtacccgcaagtccccact
ggagagcttccgctgagcacggggggctctgacgaggtgaagccccagta
agagagcccagactgtaagctgggctcagcctgccactgaagctaccctt
gcgaggtgccagggactccccgagggtgggcgagggacttccgagtcctg
cgaccccgtgctctagagtcagggagaagtcctcaggtgaagtcccgtgg
gctgcccagcgccgggccggggactctcgggccactccctgcttagcttg
ggatctgggcagtccgggctgcagtggggacaggagcatcagaacagaga
tgggacttcaacggggccagtccgcaatactgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44675420_44676500
seq2: B6Ng01-291B03.b_45_1126 (reverse)

seq1  ACAGGCACACTGCAGAAAATTGTTAAGAATCA-CAGGGGGT-GGGGGGAG  48
      ||||||||||||||| |||||||| || |||| |||||||| ||||||||
seq2  ACAGGCACACTGCAG-AAATTGTTTAGGATCACCAGGGGGTGGGGGGGAG  49

seq1  AGTTAGTCTTC-TCTCTCAGGGAACCAGATCTGTAGTCTGGAATAGTAAA  97
         |||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTCTTCTTCTCTCAGGGAACCAGATCTGTAGTCTGGAATAGTAAA  99

seq1  CAAACACTAAGTTCACTTTGAATGATGGTTCTTCTCGTTGTAAGAGGACT  147
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAACACTAAGTTCACTTTGAATGATGGTTCTTCTCG-TGTAAGAGGACT  148

seq1  TGGCTCCTTACCACCTTGAAGCAGTTACCTTCATTTAAGTTATATCCTAA  197
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGCTCCTTACCACCCTGAAGCAGTTACCTTCATTTAAGTTATATCCTAA  198

seq1  TTCAAGTTTAGGGGTGTTTGTTTGTTTTTTGCTCCCCTCCTCCCTCCCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTAGGGGTGTTTGTTTGTTTTTTGCTCCCCTCCTCCCTCCCTC  248

seq1  TTTTTTTTTTTTTCTTTTTTCCTTCTGAGATAAAGGTCTTGGGATGTAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCTTTTTTCCTTCTGAGATAAAGGTCTTGGGATGTAGT  298

seq1  CCTGGCTGGCCTGCTACTCACTAAGCAGCGATTCTCTTGGCTCGCCCTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGGCCTGCTACTCACTAAGCAGCGATTCTCTTGGCTCGCCCTCC  348

seq1  CAAGTGCAGGGGCTGCAGGCAGAGCTGCCATGCCTGGCTCTCAAGTGCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAGGGGCTGCAGGCAGAGCTGCCATGCCTGGCTCTCAAGTGCAT  398

seq1  GCTTCCACTGTAAGAGTTCAGTTCTCTCCTGGTTTGTTCTCAAGATGCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCACTGTAAGAGTTCAGTTCTCTCCTGGTTTGTTCTCAAGATGCAA  448

seq1  AATCAAGTTTCATCTTTCCTTTTAGGACTACGGGCTACTGAATGACCAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGTTTCATCTTTCCTTTTAGGACTACGGGCTACTGAATGACCAAT  498

seq1  AGCAAGTTGGGTATCACTGAGAAAGCCACAACTTCCTTCCCTCTAAAACA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTGGGTATCACTGAGAAAGCCACAACTTCCTTCCCTCTAAAACA  548

seq1  AACAGGGCCATCTCACCGCAAAGGCAGTGTGAAGAATAACATGAACATCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCCATCTCACCGCAAAGGCAGTGTGAAGAATAACATGAACATCC  598

seq1  CATTTAGGAAAGCAACAAGGCTTCCAAGGTCTCTGTCAGTTCATTATCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGGAAAGCAACAAGGCTTCCAAGGTCTCTGTCAGTTCATTATCTT  648

seq1  TTAGGACATAATGGTCAAATAATATAGTTGGAGAACTCATGGTCTATTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACATAATGGTCAAATAATATAGTTGGAGAACTCATGGTCTATTGA  698

seq1  TAACTATTTCATGTTTGGAAGCTTACTATCAAGTTCTGAGAAGCCCATAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATTTCATGTTTGGAAGCTTACTATCAAGTTCTGAGAAGCCCATAT  748

seq1  TAGATGGCATTAACTACTTTTTAAAGAAAGTCCCTGGTATTTTTTAAAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGCATTAACTACTTTTTAAAGAAAGTCCCTGGTATTTTTTAAAGT  798

seq1  GCTCTGATACTGGAGTCTTTCAAGAAGAAGAGAGAATGCAATTGGAATGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATACTGGAGTCTTTCAAGAAGAAGAGAGAATGCAATTGGAATGC  848

seq1  ACTGTGAATTTCAAAAAAAATTACTGAGGAGGAGGAGGAAGAGGAGGAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAATTTCAAAAAAAATTACTGAGGAGGAGGAGGAAGAGGAGGAAG  898

seq1  AGGAGGAAGAGGAGGAGGAGGAGGGAGGGAGAGAGAGAGAATATGAACAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAGAGGAGGAGGAGGAGGGAGGGAGAGAGAGAGAATATGAACAG  948

seq1  ACCAACGGGTATGGCATGCCTATGATTCCAGTACTTGGGAGGCAGAAGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACGGGTATGGCATGCCTATGATTCCAGTACTTGGGAGGCAGAAGCA  998

seq1  GGTAGATCTCTGTGAATACAAGGCCAGCCTGGTCTCAAAAACAAAAACAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATCTCTGTGAATACAAGGCCAGCCTGGTCTCAAAAACAAAAACAA  1048

seq1  AATCAAGAAGAACAGAGAAAGTAAGAGGGAATTC  1081
      ||||||||||||||||||||||||||||||||||
seq2  AATCAAGAAGAACAGAGAAAGTAAGAGGGAATTC  1082

seq1: chr9_44522735_44523870
seq2: B6Ng01-291B03.g_66_1199

seq1  GAATTCAAAACCAAGATCTAGAGCCTGGGAGACGGCTCTGCTGGCAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCAAGATCTAGAGCCTGGGAGACGGCTCTGCTGGCAAAGC  50

seq1  ACCTGGAACCTGAGTTCAATCCTCCAGTCACTCTAGTGCTGGGAAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGAACCTGAGTTCAATCCTCCAGTCACTCTAGTGCTGGGAAGGCAG  100

seq1  AGACCCAAGAACCTGAGGCCTTGCTGTCCAGCCAGTTCAGCTAAACCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAAGAACCTGAGGCCTTGCTGTCCAGCCAGTTCAGCTAAACCAGT  150

seq1  ATGTCTCAGGTTCAACGAGAGACTGTCTCAAAAAACAAAACCAGGCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCAGGTTCAACGAGAGACTGTCTCAAAAAACAAAACCAGGCCAGG  200

seq1  CAGTAGTGGCTCATGCCTTTAAACCCAGCACTTTTCGGAGACAGGTGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTGGCTCATGCCTTTAAACCCAGCACTTTTCGGAGACAGGTGGAT  250

seq1  TTCTGAGTTTGAAGCCAGCCTGCCTGGTCTACAGAATGAGTTCCAGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTTGAAGCCAGCCTGCCTGGTCTACAGAATGAGTTCCAGGACA  300

seq1  GCCAAGGCTACACAGAGAAACCCTGTCTTAACGCTCCCCCCCCCCAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCTACACAGAGAAACCCTGTCTTAACGCTCCCCCCCCCCAAAAA  350

seq1  AACAAAACAAACAAACGAAAACACCGAAGAGCAATTGAGGAAGACACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAACAAACGAAAACACCGAAGAGCAATTGAGGAAGACACTAC  400

seq1  CCACTCATCTCTGGCCTACACACACAGACACACACCTGCACACACGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCATCTCTGGCCTACACACACAGACACACACCTGCACACACGTATA  450

seq1  CAAAACTAAAAAATTTAGAAAGCCTTAGTGATTTCAAAGGCGGTTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAAAAAATTTAGAAAGCCTTAGTGATTTCAAAGGCGGTTTCTCT  500

seq1  CCAGGGTATCAGGATGGTGAGACACAGGTCACTTAGCCTGATGGTTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTATCAGGATGGTGAGACACAGGTCACTTAGCCTGATGGTTCATC  550

seq1  CTGAATCCGCCCAGGCCCTGTACATGGCCCCTCCTGTTCTGCCGGCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCGCCCAGGCCCTGTACATGGCCCCTCCTGTTCTGCCGGCTGGC  600

seq1  CTGCCCACACCCTGGCAGAGGCACCGCCTTGGGCAGCGGCAGCCTCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACACCCTGGCAGAGGCACCGCCTTGGGCAGCGGCAGCCTCCCTG  650

seq1  GCATTGGCTCACCAGCCTCTCCATCTCCTGCTCCCGGAGCCGCTCTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGCTCACCAGCCTCTCCATCTCCTGCTCCCGGAGCCGCTCTTGGC  700

seq1  GCTGCCGACGGTGGTACTCCAGAAGTTCGTCCTCATTGTCGCTGATCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCGACGGTGGTACTCCAGAAGTTCGTCCTCATTGTCGCTGATCTCC  750

seq1  GTGATGCTGTTTTTCCTCTCCCTTGGAATGGGTACCCGCAAGTCCCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCTGTTTTTCCTCTCCCTTGGAATGGGTACCCGCAAGTCCCCACT  800

seq1  GGAGAGCTTCCGCTGAGCAC-GGGGGCTCTGACGAGGTGAAGCCCCAGTA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAGAGCTTCCGCTGAGCACGGGGGGCTCTGACGAGGTGAAGCCCCAGTA  850

seq1  AGAGAGCCCAGACTGTAAGCTGGGCTCAGCCTGCCACTGAAGCTACCCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCCAGACTGTAAGCTGGGCTCAGCCTGCCACTGAAGCTACCCTT  900

seq1  GCGAGGTGCCAGGGACTCCCCGAGGGTGGGCGAGGGAC-TCCGAGTCCTG  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCGAGGTGCCAGGGACTCCCCGAGGGTGGGCGAGGGACTTCCGAGTCCTG  950

seq1  CGACCCCGTGCTCCTAGAGTCAGGGAGAAGTCCTCAGGTGAAGTCCCGTG  998
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGACCCCGTGCT-CTAGAGTCAGGGAGAAGTCCTCAGGTGAAGTCCCGTG  999

seq1  GGCTGCCCAGCGCCGGGGCCGGGGACTCTC-GGCCACTTCCCTGCTTAGC  1047
      |||||||||||||| ||||||||||||||| |||||| ||||||||||||
seq2  GGCTGCCCAGCGCC-GGGCCGGGGACTCTCGGGCCAC-TCCCTGCTTAGC  1047

seq1  TTGGGATCTGGGGCAGTCCGGGCTGGCAGTGGGGACAGAGCCCTTCGAGA  1097
      ||||||||| |||||||||||||| ||||||||||||| |  | ||   |
seq2  TTGGGATCT-GGGCAGTCCGGGCT-GCAGTGGGGACAG-GAGCATCAGAA  1094

seq1  CAGAGAT-GGAC-TCAACGGGGGCAGTTCCCGC-ATACTGTC  1136
      ||||||| |||| ||||||||| ||||  |||| ||||||||
seq2  CAGAGATGGGACTTCAACGGGGCCAGT--CCGCAATACTGTC  1134