BAC Information

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BAC

Clone NameB6Ng01-291B18
Chromosome9 (Build37)
Map Location 9,167,822 - 9,168,967
singlet/doubletsinglet
Overlap gene9030420J04Rik
Upstream gene1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291B18.bB6Ng01-291B18.g
ACCGA088085GA088086
length1,1681,176
definitionB6Ng01-291B18.b B6Ng01-291B18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactctgagcatctggactgtacagcattggttactctaccaatg
tagtcacaaagagcacatctggtaccaccctccccctccccccagcccag
ttaccactaaatcatcttctctgcaaacaactgattgattgaagtaggaa
tcatgtctttatgatcctgggtagaagccagcagagatattctagggaga
cactctggcctccctgtgttgtcaatcccccaacttttgttacttaatgg
attgatatcaaagtaccggacatagaagattggcagggtgggatgggtgg
gatcatatacattgcacaaaaatataagattgttttttctctttcaaaaa
tgggtgaatcttctctacagattagaggacaatcttatctactgaacacc
agccagaactgcatatgaagaccccatctcaagaaaaaaaggaagaggcc
tttaagttccattttccttgactctgacttgaacaaaaaactatttctat
aacaaaaagtggacataaccaggtgccaagtttcctgtttccaaagaagg
gaccaattggtctatctcacagtttaatttacatatgttctagccttcag
ttcatgtctttctccaaattacaggatggctgcagtcatggagagaagga
aattagataccccccacaccccaggcctggacaaagtgtaataaatccat
ttcccttctacaatttctctttcttaatttcttttaaagtacagagaaaa
taggtggttggttatagacctaagtgtctagtaacagcttcccacagctg
aatcacgctccatagagcaagagaaatccaaggctcggacacctcccaac
cttgggacatagactactcattttattctggtgaaaggcaatctggacat
ttctgagaattgaagataaaataaaatggatgtttttgtgtgaagaataa
aaggtttgaactattagctaagtagttaaacaatgtatcgtatcataggc
ttgtttttccgatggagcccttggtactagagaagcctgccattcctggc
ttttacttaaggatttggttggggggctatgcattcatgaaacttttact
ttctcgaaaactacctcagaactttgggtagacttttaaaggaatccttc
tttctttctgttattgag

gaattcttggagattctcaaatgggaattcctttcattatgcaattggct
tatgagaatgctaacgcagcaggtcactccgctattcggcctcacaaagg
acagacagacttagcgggatatatctggctttgtgcagagattgggctgt
catataatcagggtttggccttggccagtgctttgcaaggaaccactgtg
caagcaatgcttacacagaaacgagggaataatgcatgttttaagtgtgg
aactttgcgtcattttaaaaaccattgtcctaagggtagaggtgcagaga
gtggggaagcaggccatgctccaggagtttgtcctcgatgcaggaagggc
aaccattgggctagggaatgtaaatccaagacaggcattcaaggttttct
cttgctgtgaaacaagaggaaggtccagcctcagcaagcagcttatgggg
ccatgaagctgctgcccagcccaaaaaaaaaaaaaaaaaaaaaatctgtt
tttgaacttgtcagggcaaccccaggaagtgaaggattggacctctgtcc
caccacccacacaggattgactccagaaatgggagttcaaattctaccta
caggagtttttggacttctaccggcagaaacttgtggatttcttttagga
cgaagcagttctattgtaaaaggtctgcagatttatccaggtgttataga
taatgattatgagggagatgtggaacgcctgacttgccagcaagaaagac
gccacagtaggatccttctgcaacacgtttattgggagagcattgactgc
ataggcgaaaaagaccccaagccccagaaatggcgctgcttatataggcc
taggagtgatgtgaccatacctgattggttatgctaccagtacctcatta
atatgcctcgggccaggcagtgacttggcaaaaaactcttatgcacatgc
gcacattgggttgtttactcaatatcatgggcgttggcctatagaaacca
gcgcatcttgtatggcgttgcggcttccacaggagagattaaaatcatgg
gctgcttccctcatgaatataactggtacctgctaatcaaagatgtcaaa
cttgtctagttcctacatctggctacatccagatttgttagactgcagag
agaggtaacaaggtgggcctctcgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9167822_9168967
seq2: B6Ng01-291B18.b_47_1214

seq1  GAATTCACTCTGAGCATCTGGACTGTACAGCATTGGTTACTCTACCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGAGCATCTGGACTGTACAGCATTGGTTACTCTACCAATG  50

seq1  TAGTCACAAAGAGCACATCTGGTACCACCCTCCCCCTCCCCCCAGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAAAGAGCACATCTGGTACCACCCTCCCCCTCCCCCCAGCCCAG  100

seq1  TTACCACTAAATCATCTTCTCTGCAAACAACTGATTGATTGAAGTAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACTAAATCATCTTCTCTGCAAACAACTGATTGATTGAAGTAGGAA  150

seq1  TCATGTCTTTATGATCCTGGGTAGAAGCCAGCAGAGATATTCTAGGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTTTATGATCCTGGGTAGAAGCCAGCAGAGATATTCTAGGGAGA  200

seq1  CACTCTGGCCTCCCTGTGTTGTCAATCCCCCAACTTTTGTTACTTAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGGCCTCCCTGTGTTGTCAATCCCCCAACTTTTGTTACTTAATGG  250

seq1  ATTGATATCAAAGTACCGGACATAGAAGATTGGCAGGGTGGGATGGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATCAAAGTACCGGACATAGAAGATTGGCAGGGTGGGATGGGTGG  300

seq1  GATCATATACATTGCACAAAAATATAAGATTGTTTTTTCTCTTTCAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATATACATTGCACAAAAATATAAGATTGTTTTTTCTCTTTCAAAAA  350

seq1  TGGGTGAATCTTCTCTACAGATTAGAGGACAATCTTATCTACTGAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAATCTTCTCTACAGATTAGAGGACAATCTTATCTACTGAACACC  400

seq1  AGCCAGAACTGCATATGAAGACCCCATCTCAAGAAAAAAAGGAAGAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAACTGCATATGAAGACCCCATCTCAAGAAAAAAAGGAAGAGGCC  450

seq1  TTTAAGTTCCATTTTCCTTGACTCTGACTTGAACAAAAAACTATTTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTCCATTTTCCTTGACTCTGACTTGAACAAAAAACTATTTCTAT  500

seq1  AACAAAAAGTGGACATAACCAGGTGCCAAGTTTCCTGTTTCCAAAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGTGGACATAACCAGGTGCCAAGTTTCCTGTTTCCAAAGAAGG  550

seq1  GACCAATTGGTCTATCTCACAGTTTAATTTACATATGTTCTAGCCTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATTGGTCTATCTCACAGTTTAATTTACATATGTTCTAGCCTTCAG  600

seq1  TTCATGTCTTTCTCCAAATTACAGGATGGCTGCAGTCATGGAGAGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCTTTCTCCAAATTACAGGATGGCTGCAGTCATGGAGAGAAGGA  650

seq1  AATTAGATACCCCCCACACCCCAGGCCTGGACAAAGTGTAATAAATCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATACCCCCCACACCCCAGGCCTGGACAAAGTGTAATAAATCCAT  700

seq1  TTCCCTTCTACAATTTCTCTTTCTTAATTTCTTTTAAAGTACAGAGAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCTACAATTTCTCTTTCTTAATTTCTTTTAAAGTACAGAGAAAA  750

seq1  TAGGTGGTTGGTTATAGACCTAAGTGTCTAGTAACAGCTTCCCACAGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGTTGGTTATAGACCTAAGTGTCTAGTAACAGCTTCCCACAGCTG  800

seq1  AATCAGGCTCCATAGAGCAAGAGAAATCCAAGGCTCGGACACCTCCCAAC  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGCTCCATAGAGCAAGAGAAATCCAAGGCTCGGACACCTCCCAAC  850

seq1  CTTGGGACATAGACTACTCATTTTATTCTGGTGAAAGGCAATCTGGACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGACATAGACTACTCATTTTATTCTGGTGAAAGGCAATCTGGACAT  900

seq1  TTCTGAG-ACTGAAGATAAAATAAAATGGATG-TTTTGTGTGAAGAATAA  948
      ||||||| | |||||||||||||||||||||| |||||||||||||||||
seq2  TTCTGAGAATTGAAGATAAAATAAAATGGATGTTTTTGTGTGAAGAATAA  950

seq1  AAGGTTTGAACTA-TAGCTAAGTAG-TAAACAATGTATCGTATCATAGGC  996
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  AAGGTTTGAACTATTAGCTAAGTAGTTAAACAATGTATCGTATCATAGGC  1000

seq1  TTGTTTT--CG-TTGAG-CCTTGGTACTAGAG-AGCCTGCCAT--CTTGC  1039
      |||||||  || | ||| |||||||||||||| ||||||||||  || ||
seq2  TTGTTTTTCCGATGGAGCCCTTGGTACTAGAGAAGCCTGCCATTCCTGGC  1050

seq1  -TTTACTT-AGGATTTG--TTGGGGGCTATGCAATCATGAAAC-TTTACT  1084
       ||||||| ||||||||  | |||||||||||| ||||||||| ||||||
seq2  TTTTACTTAAGGATTTGGTTGGGGGGCTATGCATTCATGAAACTTTTACT  1100

seq1  TTCT--GAAACTA-CTCAGAACTTTGGTAAGACTTTTAAAG--ATCTTTC  1129
      ||||   |||||| |||||||||||||  ||||||||||||  ||| |||
seq2  TTCTCGAAAACTACCTCAGAACTTTGGGTAGACTTTTAAAGGAATCCTTC  1150

seq1  CTTC-TTCTGTTATTGAG  1146
       ||| |||||||||||||
seq2  TTTCTTTCTGTTATTGAG  1168


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