BAC Information

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BAC

Clone NameB6Ng01-291K24
Chromosome9 (Build37)
Map Location 63,687,186 - 63,841,157
singlet/doubletdoublet
Overlap geneSmad6
Upstream geneCln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
Downstream gene2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291K24.bB6Ng01-291K24.g
ACCGA088511GA088512
length874753
definitionB6Ng01-291K24.b B6Ng01-291K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,687,186 - 63,688,056)(63,840,407 - 63,841,157)
sequence
gaattcagttcccaagatgacagaaaacccaccaggaacagcaaaatcat
gactacaggattgtttttgcagtctaccaacacaacacaagtggaaggga
ctgttcccacagttgtgcttgcaggggttagtcatcctcaccctgatgcg
cagctctccctccatagctctcacctgccaagtgccccccggcacgctga
ctaaggcaggctgagtcacacggggccgcacgggggctggctggggtagc
atgcggaggcacagagtccttcctaactgtagacagtgaatcaccgcatc
acttagcaccaggaccgctctatccatggtaccccacacactcaattgcc
tgaaccctcttagttctctggactccactgtgcctcgttagctggagtga
gatactcctgttcgtacctgtggatggcatggcctcccttctcccctccc
accccaccccaactggaagaatcctgaacttcaagggcctggcaggccca
aacccataggaactttcttttcaggggtggggatgagattagggtcaggg
aggtgtctaggaaaaccggagattagattccgactcccaggacccagatt
aggaccttggcttttcacttatagtttggaagagcttgtccaagctactt
aatctctctgtgcctcgttttccttgtcccctgaatgggaggagatcatc
tctgcagagcaaggtttcagcactggcatatgggctctggcaaactatgt
aggaccctttgagctttccggggacgatgcagggtaagcaggccaattcg
tttcacagataaggtcaccgaagctcaagggtcaaacccacaggtaatca
tttcattccagatcctgggctcag
gaattcaggctgtcaggcttggaggcagcaagtatctgtgcctgctgagg
tacagatttggtttagaggatggctaaggccttttggggggattttcctc
cttttctcatggatcagaaactggcagagtcttagcctggggttgcagag
tggctgatgggaggagctttggactatgtggggccagaaggaagctctaa
ggccagaggcagccataggtgctggcagccaggaggctcagggcccttcc
aggattgccgacactcagaggtggccagttcatgtttgactgttttcaaa
atctcaaagcccggggcttggaagagcagcttttggctgacctcaccctg
aggtgatgagtgtggggtttaaaggcctttgtaactctttggtttggaat
ggggctctggacagggctggggaaaacactggaacctgttagtactggcc
tccgttgctccacctctggaaggaggcaattgtctctttctttgttacca
cagaagtcccaggaacctgacagacaggatttggagagggagaagaggtc
tggagagggccctagctaggccttcggagagagccagaatgggctctaag
catttactgacagcccattattagtcctgacttgcgttggaacctctgag
tgttggaggtgaagatccggaaacccagaaagggttcactcacctaccag
tcactccgggaaacacttgaagggagctgtgactcaaaaccaaattgtgt
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_63687186_63688056
seq2: B6Ng01-291K24.b_50_923

seq1  GAATTCAGTTCCCAAGATGACAGAAAACCCACCAGGAACAGCAAAATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCCAAGATGACAGAAAACCCACCAGGAACAGCAAAATCAT  50

seq1  GACTACAGGATTGTTTTTGCAGTCTACCAACACAACACAAGTGGAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGGATTGTTTTTGCAGTCTACCAACACAACACAAGTGGAAGGGA  100

seq1  CTGTTCCCACAGTTGTGCTTGCAGGGGTTAGTCATCCTCACCCTGATGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCACAGTTGTGCTTGCAGGGGTTAGTCATCCTCACCCTGATGCG  150

seq1  CAGCTCTCCCTCCATAGCTCTCACCTGCCAAGTGCCCCCCGGCACGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTCCCTCCATAGCTCTCACCTGCCAAGTGCCCCCCGGCACGCTGA  200

seq1  CTAAGGCAGGCTGAGTCACACGGGGCCGCACGGGGGCTGGCTGGGGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCAGGCTGAGTCACACGGGGCCGCACGGGGGCTGGCTGGGGTAGC  250

seq1  ATGCGGAGGCACAGAGTCCTTCCTAACTGTAGACAGTGAATCACCGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGGAGGCACAGAGTCCTTCCTAACTGTAGACAGTGAATCACCGCATC  300

seq1  ACTTAGCACCAGGACCGCTCTATCCATGGTACCCCACACACTCAATTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCACCAGGACCGCTCTATCCATGGTACCCCACACACTCAATTGCC  350

seq1  TGAACCCTCTTAGTTCTCTGGACTCCACTGTGCCTCGTTAGCTGGAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCTCTTAGTTCTCTGGACTCCACTGTGCCTCGTTAGCTGGAGTGA  400

seq1  GATACTCCTGTTCGTACCTGTGGATGGCATGGCCTCCCTTCTCCCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCCTGTTCGTACCTGTGGATGGCATGGCCTCCCTTCTCCCCTCCC  450

seq1  ACCCCACCCCAACTGGAAGAATCCTGAACTTCAAGGGCCTGGCAGGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCCCAACTGGAAGAATCCTGAACTTCAAGGGCCTGGCAGGCCCA  500

seq1  AACCCATAGGAACTTTCTTTTCAGGGGTGGGGATGAGATTAGGGTCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATAGGAACTTTCTTTTCAGGGGTGGGGATGAGATTAGGGTCAGGG  550

seq1  AGGTGTCTAGGAAAACCGGAGATTAGATTCCGACTCCCAGGACCCAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCTAGGAAAACCGGAGATTAGATTCCGACTCCCAGGACCCAGATT  600

seq1  AGGACCTTGGCTTTTCACTTATAGTTTGGAAGAGCTTGTCCAAGCTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTGGCTTTTCACTTATAGTTTGGAAGAGCTTGTCCAAGCTACTT  650

seq1  AATCTCTCTGTGCCTCGTTTTCCTTGTCCCCTGAATGGGAGGAGATCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCTGTGCCTCGTTTTCCTTGTCCCCTGAATGGGAGGAGATCATC  700

seq1  TCTGCAGAGCAAGG-TTCAGCACTGGCATATGGGCTCTGGCAAACTATGT  749
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGCAAGGTTTCAGCACTGGCATATGGGCTCTGGCAAACTATGT  750

seq1  AGGACCC-TTGAGCTTCCCGGGGACGATGCAGGGTAAGCAGGCCAATTCG  798
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  AGGACCCTTTGAGCTTTCCGGGGACGATGCAGGGTAAGCAGGCCAATTCG  800

seq1  TTTCACAGATAAGGTCACCGAAGCTC-AGGGTCAAACCCACAGGTAATCA  847
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTCACAGATAAGGTCACCGAAGCTCAAGGGTCAAACCCACAGGTAATCA  850

seq1  TTTCATTCCAGATCCTGGGCTCAG  871
      ||||||||||||||||||||||||
seq2  TTTCATTCCAGATCCTGGGCTCAG  874

seq1: chr9_63840407_63841157
seq2: B6Ng01-291K24.g_67_819 (reverse)

seq1  CACACACAA-TTGGTTTTGAGTCACAGCT-CCTTCAAGTGTTTCCCGGAG  48
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  CACACACAATTTGGTTTTGAGTCACAGCTCCCTTCAAGTGTTTCCCGGAG  50

seq1  TGACTGGTAGGTGAGTGAACCCTTTCTGGGTTTCCGGATCTTCACCTCCA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGTAGGTGAGTGAACCCTTTCTGGGTTTCCGGATCTTCACCTCCA  100

seq1  ACACTCAGAGGTTCCAACGCAAGTCAGGACTAATAATGGGCTGTCAGTAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGAGGTTCCAACGCAAGTCAGGACTAATAATGGGCTGTCAGTAA  150

seq1  ATGCTTAGAGCCCATTCTGGCTCTCTCCGAAGGCCTAGCTAGGGCCCTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGAGCCCATTCTGGCTCTCTCCGAAGGCCTAGCTAGGGCCCTCT  200

seq1  CCAGACCTCTTCTCCCTCTCCAAATCCTGTCTGTCAGGTTCCTGGGACTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTCTTCTCCCTCTCCAAATCCTGTCTGTCAGGTTCCTGGGACTT  250

seq1  CTGTGGTAACAAAGAAAGAGACAATTGCCTCCTTCCAGAGGTGGAGCAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTAACAAAGAAAGAGACAATTGCCTCCTTCCAGAGGTGGAGCAAC  300

seq1  GGAGGCCAGTACTAACAGGTTCCAGTGTTTTCCCCAGCCCTGTCCAGAGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCAGTACTAACAGGTTCCAGTGTTTTCCCCAGCCCTGTCCAGAGC  350

seq1  CCCATTCCAAACCAAAGAGTTACAAAGGCCTTTAAACCCCACACTCATCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCCAAACCAAAGAGTTACAAAGGCCTTTAAACCCCACACTCATCA  400

seq1  CCTCAGGGTGAGGTCAGCCAAAAGCTGCTCTTCCAAGCCCCGGGCTTTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGTGAGGTCAGCCAAAAGCTGCTCTTCCAAGCCCCGGGCTTTGA  450

seq1  GATTTTGAAAACAGTCAAACATGAACTGGCCACCTCTGAGTGTCGGCAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAAAACAGTCAAACATGAACTGGCCACCTCTGAGTGTCGGCAAT  500

seq1  CCTGGAAGGGCCCTGAGCCTCCTGGCTGCCAGCACCTATGGCTGCCTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGGGCCCTGAGCCTCCTGGCTGCCAGCACCTATGGCTGCCTCTG  550

seq1  GCCTTAGAGCTTCCTTCTGGCCCCACATAGTCCAAAGCTCCTCCCATCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGAGCTTCCTTCTGGCCCCACATAGTCCAAAGCTCCTCCCATCAG  600

seq1  CCACTCTGCAACCCCAGGCTAAGACTCTGCCAGTTTCTGATCCATGAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTGCAACCCCAGGCTAAGACTCTGCCAGTTTCTGATCCATGAGAA  650

seq1  AAGGAGGAAAATCCCCCCAAAAGGCCTTAGCCATCCTCTAAACCAAATCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGAAAATCCCCCCAAAAGGCCTTAGCCATCCTCTAAACCAAATCT  700

seq1  GTACCTCAGCAGGCACAGATACTTGCTGCCTCCAAGCCTGACAGCCTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCAGCAGGCACAGATACTTGCTGCCTCCAAGCCTGACAGCCTGAA  750

seq1  TTC  751
      |||
seq2  TTC  753